0.019194
0.000000
0.000000
0.000000
0.016722
0.000000
0.000000
0.000000
0.016077
0.00000
0.00000
0.00000
ILE 15B - GLY 16B OMEGA = 216.69 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
SER 203 - GLY 204 OMEGA = 0.34 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
ILE 15A - GLY 16A OMEGA = 210.89 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
GLY 16A - GLY 17A OMEGA = 348.40 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
Bhat, T.N.
Baldwin, E.T.
Erickson, J.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
52.100
59.800
62.200
C44 H58 N8 O6
794.981
N-{1-BENZYL-(2S,3S)-2,3-DIHYDROXY-4-[3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRYLAMINO]-5-PHENYL-PENTYL}-3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRAMIDE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
N
N
4
N
C
N
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
N
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
N
N
13
S
C
N
14
N
C
N
15
N
O
N
16
N
C
N
17
N
C
N
18
N
C
N
19
N
N
N
20
S
C
N
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
N
28
S
C
N
29
N
O
N
30
N
O
N
31
S
C
N
32
N
N
N
33
S
C
N
34
N
C
Y
35
N
C
Y
36
N
C
Y
37
N
C
Y
38
N
C
Y
39
N
C
Y
40
N
C
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
C
N
49
N
O
N
50
N
N
N
51
N
C
N
52
N
C
Y
53
N
C
Y
54
N
C
Y
55
N
N
Y
56
N
C
Y
57
N
C
Y
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
N
N
138
N
C
N
139
N
N
N
140
N
N
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
R
C
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
S
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
N
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
O
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
Y
258
N
C
Y
259
N
N
Y
260
N
C
Y
261
N
C
Y
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
S
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
N
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
S
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
R
C
N
425
N
O
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
N
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
Y
12
N
sing
Y
13
N
doub
Y
14
N
doub
N
15
N
sing
Y
16
N
sing
Y
17
N
sing
N
18
N
sing
Y
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
Y
46
N
doub
Y
47
N
sing
Y
48
N
sing
N
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
N
53
N
sing
Y
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
Y
73
N
doub
Y
74
N
sing
Y
75
N
sing
N
76
N
sing
Y
77
N
doub
N
78
N
sing
Y
79
N
sing
N
80
N
sing
Y
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
sing
Y
111
N
doub
Y
112
N
doub
N
113
N
sing
Y
114
N
sing
Y
115
N
sing
N
116
N
sing
Y
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
Y
259
N
sing
Y
260
N
doub
Y
261
N
doub
N
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
Y
441
N
sing
Y
442
N
sing
N
443
N
sing
Y
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
1
552
556
10.1038/nsb0894-552
7664084
Crystal structure of a tethered dimer of HIV-1 proteinase complexed with an inhibitor.
1994
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
116
847
Influence of Stereochemistry on Activity and Binding Modes for C2 Symmetry-Based Diol Inhibitors of HIV-1 Protease
1994
US
Annu.Rev.Biochem.
ARBOAW
0413
0066-4154
62
543
Structure-Based Inhibitors of HIV-1 Protease
1993
10.2210/pdb1hvc/pdb
pdb_00001hvc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
21961.850
HIV-1 PROTEASE
1
man
polymer
794.981
N-{1-BENZYL-(2S,3S)-2,3-DIHYDROXY-4-[3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRYLAMINO]-5-PHENYL-PENTYL}-3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRAMIDE
1
syn
non-polymer
18.015
water
68
nat
water
no
no
PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNFGGSSGPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV
RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNFGGSSGPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV
RQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
sample
SYNTHETIC GENE
11676
Human immunodeficiency virus 1
562
Escherichia coli
2.20
44.21
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1994-10-15
1
1
2008-03-10
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1994-06-22
REL
A79
N-{1-BENZYL-(2S,3S)-2,3-DIHYDROXY-4-[3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRYLAMINO]-5-PHENYL-PENTYL}-3-METHYL-2-(3-METHYL-3-PYRIDIN-2-YLMETHYL-UREIDO)-BUTYRAMIDE
HOH
water
A79
800
2
A79
A79
800
A
HOH
403
3
HOH
HOH
403
A
HOH
406
3
HOH
HOH
406
A
HOH
408
3
HOH
HOH
408
A
HOH
412
3
HOH
HOH
412
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
430
3
HOH
HOH
430
A
HOH
432
3
HOH
HOH
432
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
449
3
HOH
HOH
449
A
HOH
451
3
HOH
HOH
451
A
HOH
454
3
HOH
HOH
454
A
HOH
462
3
HOH
HOH
462
A
HOH
465
3
HOH
HOH
465
A
HOH
477
3
HOH
HOH
477
A
HOH
478
3
HOH
HOH
478
A
HOH
485
3
HOH
HOH
485
A
HOH
486
3
HOH
HOH
486
A
HOH
487
3
HOH
HOH
487
A
HOH
489
3
HOH
HOH
489
A
HOH
491
3
HOH
HOH
491
A
HOH
499
3
HOH
HOH
499
A
HOH
501
3
HOH
HOH
501
A
HOH
506
3
HOH
HOH
506
A
HOH
509
3
HOH
HOH
509
A
HOH
512
3
HOH
HOH
512
A
HOH
517
3
HOH
HOH
517
A
HOH
519
3
HOH
HOH
519
A
HOH
521
3
HOH
HOH
521
A
HOH
523
3
HOH
HOH
523
A
HOH
524
3
HOH
HOH
524
A
HOH
534
3
HOH
HOH
534
A
HOH
535
3
HOH
HOH
535
A
HOH
540
3
HOH
HOH
540
A
HOH
545
3
HOH
HOH
545
A
HOH
546
3
HOH
HOH
546
A
HOH
549
3
HOH
HOH
549
A
HOH
553
3
HOH
HOH
553
A
HOH
559
3
HOH
HOH
559
A
HOH
561
3
HOH
HOH
561
A
HOH
569
3
HOH
HOH
569
A
HOH
570
3
HOH
HOH
570
A
HOH
575
3
HOH
HOH
575
A
HOH
576
3
HOH
HOH
576
A
HOH
578
3
HOH
HOH
578
A
HOH
585
3
HOH
HOH
585
A
HOH
586
3
HOH
HOH
586
A
HOH
587
3
HOH
HOH
587
A
HOH
590
3
HOH
HOH
590
A
HOH
591
3
HOH
HOH
591
A
HOH
592
3
HOH
HOH
592
A
HOH
593
3
HOH
HOH
593
A
HOH
601
3
HOH
HOH
601
A
HOH
602
3
HOH
HOH
602
A
HOH
605
3
HOH
HOH
605
A
HOH
609
3
HOH
HOH
609
A
HOH
610
3
HOH
HOH
610
A
HOH
611
3
HOH
HOH
611
A
HOH
612
3
HOH
HOH
612
A
PRO
1
n
1
B
PRO
1
A
GLN
2
n
2
B
GLN
2
A
ILE
3
n
3
B
ILE
3
A
THR
4
n
4
B
THR
4
A
LEU
5
n
5
B
LEU
5
A
TRP
6
n
6
B
TRP
6
A
GLN
7
n
7
B
GLN
7
A
ARG
8
n
8
B
ARG
8
A
PRO
9
n
9
B
PRO
9
A
LEU
10
n
10
B
LEU
10
A
VAL
11
n
11
B
VAL
11
A
THR
12
n
12
B
THR
12
A
ILE
13
n
13
B
ILE
13
A
ARG
14
n
14
B
ARG
14
A
ILE
15
n
15
B
ILE
15
A
GLY
16
n
16
B
GLY
16
A
GLY
17
n
17
B
GLY
17
A
GLN
18
n
18
B
GLN
18
A
LEU
19
n
19
B
LEU
19
A
LYS
20
n
20
B
LYS
20
A
GLU
21
n
21
B
GLU
21
A
ALA
22
n
22
B
ALA
22
A
LEU
23
n
23
B
LEU
23
A
LEU
24
n
24
B
LEU
24
A
ASP
25
n
25
B
ASP
25
A
THR
26
n
26
B
THR
26
A
GLY
27
n
27
B
GLY
27
A
ALA
28
n
28
B
ALA
28
A
ASP
29
n
29
B
ASP
29
A
ASP
30
n
30
B
ASP
30
A
THR
31
n
31
B
THR
31
A
VAL
32
n
32
B
VAL
32
A
LEU
33
n
33
B
LEU
33
A
GLU
34
n
34
B
GLU
34
A
GLU
35
n
35
B
GLU
35
A
MET
36
n
36
B
MET
36
A
ASN
37
n
37
B
ASN
37
A
LEU
38
n
38
B
LEU
38
A
PRO
39
n
39
B
PRO
39
A
GLY
40
n
40
B
GLY
40
A
LYS
41
n
41
B
LYS
41
A
TRP
42
n
42
B
TRP
42
A
LYS
43
n
43
B
LYS
43
A
PRO
44
n
44
B
PRO
44
A
LYS
45
n
45
B
LYS
45
A
MET
46
n
46
B
MET
46
A
ILE
47
n
47
B
ILE
47
A
GLY
48
n
48
B
GLY
48
A
GLY
49
n
49
B
GLY
49
A
ILE
50
n
50
B
ILE
50
A
GLY
51
n
51
B
GLY
51
A
GLY
52
n
52
B
GLY
52
A
PHE
53
n
53
B
PHE
53
A
ILE
54
n
54
B
ILE
54
A
LYS
55
n
55
B
LYS
55
A
VAL
56
n
56
B
VAL
56
A
ARG
57
n
57
B
ARG
57
A
GLN
58
n
58
B
GLN
58
A
TYR
59
n
59
B
TYR
59
A
ASP
60
n
60
B
ASP
60
A
GLN
61
n
61
B
GLN
61
A
ILE
62
n
62
B
ILE
62
A
LEU
63
n
63
B
LEU
63
A
ILE
64
n
64
B
ILE
64
A
GLU
65
n
65
B
GLU
65
A
ILE
66
n
66
B
ILE
66
A
CYS
67
n
67
B
CYS
67
A
GLY
68
n
68
B
GLY
68
A
HIS
69
n
69
B
HIS
69
A
LYS
70
n
70
B
LYS
70
A
ALA
71
n
71
B
ALA
71
A
ILE
72
n
72
B
ILE
72
A
GLY
73
n
73
B
GLY
73
A
THR
74
n
74
B
THR
74
A
VAL
75
n
75
B
VAL
75
A
LEU
76
n
76
B
LEU
76
A
VAL
77
n
77
B
VAL
77
A
GLY
78
n
78
B
GLY
78
A
PRO
79
n
79
B
PRO
79
A
THR
80
n
80
B
THR
80
A
PRO
81
n
81
B
PRO
81
A
VAL
82
n
82
B
VAL
82
A
ASN
83
n
83
B
ASN
83
A
ILE
84
n
84
B
ILE
84
A
ILE
85
n
85
B
ILE
85
A
GLY
86
n
86
B
GLY
86
A
ARG
87
n
87
B
ARG
87
A
ASN
88
n
88
B
ASN
88
A
LEU
89
n
89
B
LEU
89
A
LEU
90
n
90
B
LEU
90
A
THR
91
n
91
B
THR
91
A
GLN
92
n
92
B
GLN
92
A
ILE
93
n
93
B
ILE
93
A
GLY
94
n
94
B
GLY
94
A
CYS
95
n
95
B
CYS
95
A
THR
96
n
96
B
THR
96
A
LEU
97
n
97
B
LEU
97
A
ASN
98
n
98
B
ASN
98
A
PHE
99
n
99
B
PHE
99
A
GLY
200
n
100
GLY
200
A
GLY
201
n
101
GLY
201
A
SER
202
n
102
SER
202
A
SER
203
n
103
SER
203
A
GLY
204
n
104
GLY
204
A
PRO
1
n
105
A
PRO
1
A
GLN
2
n
106
A
GLN
2
A
ILE
3
n
107
A
ILE
3
A
THR
4
n
108
A
THR
4
A
LEU
5
n
109
A
LEU
5
A
TRP
6
n
110
A
TRP
6
A
GLN
7
n
111
A
GLN
7
A
ARG
8
n
112
A
ARG
8
A
PRO
9
n
113
A
PRO
9
A
LEU
10
n
114
A
LEU
10
A
VAL
11
n
115
A
VAL
11
A
THR
12
n
116
A
THR
12
A
ILE
13
n
117
A
ILE
13
A
LYS
14
n
118
A
LYS
14
A
ILE
15
n
119
A
ILE
15
A
GLY
16
n
120
A
GLY
16
A
GLY
17
n
121
A
GLY
17
A
GLN
18
n
122
A
GLN
18
A
LEU
19
n
123
A
LEU
19
A
LYS
20
n
124
A
LYS
20
A
GLU
21
n
125
A
GLU
21
A
ALA
22
n
126
A
ALA
22
A
LEU
23
n
127
A
LEU
23
A
LEU
24
n
128
A
LEU
24
A
ASP
25
n
129
A
ASP
25
A
THR
26
n
130
A
THR
26
A
GLY
27
n
131
A
GLY
27
A
ALA
28
n
132
A
ALA
28
A
ASP
29
n
133
A
ASP
29
A
ASP
30
n
134
A
ASP
30
A
THR
31
n
135
A
THR
31
A
VAL
32
n
136
A
VAL
32
A
LEU
33
n
137
A
LEU
33
A
GLU
34
n
138
A
GLU
34
A
GLU
35
n
139
A
GLU
35
A
MET
36
n
140
A
MET
36
A
SER
37
n
141
A
SER
37
A
LEU
38
n
142
A
LEU
38
A
PRO
39
n
143
A
PRO
39
A
GLY
40
n
144
A
GLY
40
A
ARG
41
n
145
A
ARG
41
A
TRP
42
n
146
A
TRP
42
A
LYS
43
n
147
A
LYS
43
A
PRO
44
n
148
A
PRO
44
A
LYS
45
n
149
A
LYS
45
A
MET
46
n
150
A
MET
46
A
ILE
47
n
151
A
ILE
47
A
GLY
48
n
152
A
GLY
48
A
GLY
49
n
153
A
GLY
49
A
ILE
50
n
154
A
ILE
50
A
GLY
51
n
155
A
GLY
51
A
GLY
52
n
156
A
GLY
52
A
PHE
53
n
157
A
PHE
53
A
ILE
54
n
158
A
ILE
54
A
LYS
55
n
159
A
LYS
55
A
VAL
56
n
160
A
VAL
56
A
ARG
57
n
161
A
ARG
57
A
GLN
58
n
162
A
GLN
58
A
TYR
59
n
163
A
TYR
59
A
ASP
60
n
164
A
ASP
60
A
GLN
61
n
165
A
GLN
61
A
ILE
62
n
166
A
ILE
62
A
LEU
63
n
167
A
LEU
63
A
ILE
64
n
168
A
ILE
64
A
GLU
65
n
169
A
GLU
65
A
ILE
66
n
170
A
ILE
66
A
CYS
67
n
171
A
CYS
67
A
GLY
68
n
172
A
GLY
68
A
HIS
69
n
173
A
HIS
69
A
LYS
70
n
174
A
LYS
70
A
ALA
71
n
175
A
ALA
71
A
ILE
72
n
176
A
ILE
72
A
GLY
73
n
177
A
GLY
73
A
THR
74
n
178
A
THR
74
A
VAL
75
n
179
A
VAL
75
A
LEU
76
n
180
A
LEU
76
A
VAL
77
n
181
A
VAL
77
A
GLY
78
n
182
A
GLY
78
A
PRO
79
n
183
A
PRO
79
A
THR
80
n
184
A
THR
80
A
PRO
81
n
185
A
PRO
81
A
VAL
82
n
186
A
VAL
82
A
ASN
83
n
187
A
ASN
83
A
ILE
84
n
188
A
ILE
84
A
ILE
85
n
189
A
ILE
85
A
GLY
86
n
190
A
GLY
86
A
ARG
87
n
191
A
ARG
87
A
ASN
88
n
192
A
ASN
88
A
LEU
89
n
193
A
LEU
89
A
LEU
90
n
194
A
LEU
90
A
THR
91
n
195
A
THR
91
A
GLN
92
n
196
A
GLN
92
A
ILE
93
n
197
A
ILE
93
A
GLY
94
n
198
A
GLY
94
A
CYS
95
n
199
A
CYS
95
A
THR
96
n
200
A
THR
96
A
LEU
97
n
201
A
LEU
97
A
ASN
98
n
202
A
ASN
98
A
PHE
99
n
203
A
PHE
99
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
A
N
ILE
3
A
N
ILE
3
A
A
O
LEU
97
A
O
LEU
201
A
A
O
ASN
98
A
O
ASN
202
B
A
N
THR
96
A
N
THR
96
B
A
N
LEU
97
A
N
LEU
97
A
A
O
ILE
3
A
O
ILE
107
B
A
N
LYS
43
A
N
LYS
43
B
A
O
GLN
58
A
O
GLN
58
B
A
N
ILE
62
A
N
ILE
62
B
A
O
GLY
73
A
O
GLY
73
B
A
O
LEU
76
A
O
LEU
76
B
A
N
LEU
33
A
N
LEU
33
B
A
N
VAL
32
A
N
VAL
32
B
A
O
ILE
84
A
O
ILE
84
B
A
O
ILE
85
A
O
ILE
85
B
A
N
LEU
23
A
N
LEU
23
B
A
O
LYS
20
A
O
LYS
20
B
A
N
ILE
13
A
N
ILE
13
B
A
N
ARG
14
A
N
ARG
14
B
A
O
GLU
65
A
O
GLU
65
A
A
N
LYS
45
A
N
LYS
149
A
A
O
VAL
56
A
O
VAL
160
A
A
N
ILE
66
A
N
ILE
170
A
A
O
HIS
69
A
O
HIS
173
A
A
O
LEU
76
A
O
LEU
180
A
A
N
LEU
33
A
N
LEU
137
A
A
N
VAL
32
A
N
VAL
136
A
A
O
ILE
84
A
O
ILE
188
A
A
O
ILE
85
A
O
ILE
189
A
A
N
LEU
23
A
N
LEU
127
A
A
O
GLN
18
A
O
GLN
122
A
A
N
ILE
15
A
N
ILE
119
A
A
N
LYS
14
A
N
LYS
118
A
A
O
GLU
65
A
O
GLU
169
B
B
1
A
A
ILE
GLY
15
16
-143.31
A
A
1
A
A
ILE
GLY
15
16
-149.11
B
B
B
1
7.68
1.10
114.20
121.88
A
A
A
CA
CB
SG
CYS
CYS
CYS
95
95
95
N
A
A
A
1
3.97
0.50
120.30
124.27
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
87
87
87
N
B
B
1
A
A
CG
CD2
HIS
HIS
69
69
0.057
0.009
1.354
1.411
N
B
1
A
ILE
15
-153.61
89.85
1
A
SER
202
155.04
154.65
1
A
SER
203
-20.97
95.71
A
1
A
GLU
34
-43.81
151.82
1.8
10.
16421
88.0
1
1.8
10.
204
3491
116
0
3171
0.018
3.0
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR
1
N
N
2
N
N
3
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
B
B
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
2
3
B
B
A
GLY
86
A
GLY
190
HELX_P
A
THR
91
A
THR
195
1
3
6
A
A
HYDROLASE(ACID PROTEASE)
HYDROLASE(ACID PROTEASE)
A
SER
203
A
SER
103
1
A
GLY
204
A
GLY
104
0.34
A
GLY
16
A
GLY
120
A
A
1
A
GLY
17
A
GLY
121
-11.60
O92139_9HIV1
UNP
1
1
O92139
1
99
1HVC
1
99
O92139
B
B
A
1
1
99
1
99
1HVC
1
99
O92139
A
A
A
1
105
203
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
B
A
THR
96
A
THR
200
A
ASN
98
A
ASN
202
A
A
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
B
A
GLN
2
A
GLN
106
A
ILE
3
A
ILE
107
A
A
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
B
B
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
B
A
HIS
69
A
HIS
69
A
GLY
78
A
GLY
78
B
B
A
THR
31
A
THR
31
A
GLU
34
A
GLU
34
B
B
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
B
B
A
LEU
19
A
LEU
19
A
LEU
24
A
LEU
24
B
B
A
LEU
10
A
LEU
10
A
ARG
14
A
ARG
14
B
B
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
B
A
LYS
43
A
LYS
147
A
GLY
49
A
GLY
153
A
A
A
GLY
52
A
GLY
156
A
ILE
66
A
ILE
170
A
A
A
HIS
69
A
HIS
173
A
GLY
78
A
GLY
182
A
A
A
VAL
32
A
VAL
136
A
GLU
34
A
GLU
138
A
A
A
ILE
84
A
ILE
188
A
ILE
85
A
ILE
189
A
A
A
GLN
18
A
GLN
122
A
LEU
24
A
LEU
128
A
A
A
LEU
10
A
LEU
114
A
ILE
15
A
ILE
119
A
A
A
GLY
52
A
GLY
156
A
ILE
66
A
ILE
170
A
A
BINDING SITE FOR RESIDUE A79 A 800
A
A79
800
Software
19
A
ARG
8
A
ARG
112
A
19
1_555
A
ARG
8
A
ARG
8
B
19
1_555
A
ASP
25
A
ASP
129
A
19
1_555
A
ASP
25
A
ASP
25
B
19
1_555
A
GLY
27
A
GLY
131
A
19
1_555
A
GLY
27
A
GLY
27
B
19
1_555
A
ALA
28
A
ALA
132
A
19
1_555
A
ALA
28
A
ALA
28
B
19
1_555
A
ASP
29
A
ASP
133
A
19
1_555
A
ASP
29
A
ASP
29
B
19
1_555
A
GLY
48
A
GLY
152
A
19
1_555
A
GLY
48
A
GLY
48
B
19
1_555
A
GLY
49
A
GLY
153
A
19
1_555
A
ILE
50
A
ILE
50
B
19
1_555
A
VAL
82
A
VAL
186
A
19
1_555
A
VAL
82
A
VAL
82
B
19
1_555
A
ILE
84
A
ILE
188
A
19
1_555
A
ILE
84
A
ILE
84
B
19
1_555
A
HOH
415
C
HOH
19
1_555
19
P 21 21 21