1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Craik, D.J. Trabi, M. Schirra, H.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 40 4211 4221 10.1021/bi002028t 11284676 Three-dimensional structure of RTD-1, a cyclic antimicrobial defensin from Rhesus macaque leukocytes. 2001 10.2210/pdb1hvz/pdb pdb_00001hvz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2110.668 THETA DEFENSIN 1 1 syn polymer RTD-1 no no GFCRCLCRRGVCRCICTR GFCRCLCRRGVCRCICTR A polypeptide(L) n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-05-30 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag SEQUENCE RESIDUES NUMBERED ACCORDING TO TANG ET AL., SCIENCE 286 (1999), PP. 498-502 RCSB Y RCSB 2001-01-09 REL REL The peptide was chemically synthesized. This sequence occurs naturally in rhesus macaques (mucaca mulatta) sample This structure was determined using standard 2D homonuclear techniques. structures with the least restraint violations,structures with the lowest energy 100 20 2D NOESY DQF-COSY DQF-COSY 20mM sodium phosphate 4.5 ambient 310 K 20mM sodium phosphate 4.5 ambient 300 K 20mM sodium phosphate 4.5 ambient 280 K The structures are based on a total of 94 restraints, 87 are NOE-derived distance constraints, 7 dihedral angle restraints torsion angle dynamics, simulated annealing, explicit inclusion of water molecules 1mM RTD-1, 20mM sodium phosphate pH 4.5, 80% H2O, 10% D2O, 10% acetonitrile-d3 80% H2O, 10% D2O, 10% acetonitrile-d3 1mM RTD-1, 20mM sodium phosphate pH 4.5, 90% H2O, 10% D2O 90% H2O/10% D2O 1mM RTD-1, 20mM sodium phosphate pH 4.5, 99% D2O 99% D2O Bruker collection XwinNMR 2.6 Bruker processing XwinNMR 2.6 Cieslar, Kalus & Holak data analysis CCNMR Brunger structure solution X-PLOR 3.851 Brunger structure solution CNS 1.0 Brunger refinement CNS 1.0 750 Bruker DMX 500 Bruker ARX GLY 1 n 1 GLY 1 A PHE 2 n 2 PHE 2 A CYS 3 n 3 CYS 3 A ARG 4 n 4 ARG 4 A CYS 5 n 5 CYS 5 A LEU 6 n 6 LEU 6 A CYS 7 n 7 CYS 7 A ARG 8 n 8 ARG 8 A ARG 9 n 9 ARG 9 A GLY 10 n 10 GLY 10 A VAL 11 n 11 VAL 11 A CYS 12 n 12 CYS 12 A ARG 13 n 13 ARG 13 A CYS 14 n 14 CYS 14 A ILE 15 n 15 ILE 15 A CYS 16 n 16 CYS 16 A THR 17 n 17 THR 17 A ARG 18 n 18 ARG 18 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 8 A N ARG 8 A O VAL 11 A O VAL 11 6 A A HA HA CYS CYS 5 14 1.19 1 A ARG 9 -62.53 79.33 2 A LEU 6 -106.65 69.01 2 A ARG 9 -60.82 79.60 2 A CYS 14 -110.16 58.55 3 A ARG 9 -61.77 78.36 4 A CYS 5 -118.43 66.83 4 A CYS 7 69.83 146.59 4 A ARG 9 -63.76 80.62 4 A CYS 12 -96.82 55.37 4 A CYS 14 65.52 174.42 5 A PHE 2 -178.26 135.51 5 A ARG 9 -61.78 79.09 6 A ARG 4 -122.44 -64.57 6 A ARG 9 -67.61 80.93 6 A ARG 13 -103.79 79.33 7 A ARG 9 -65.13 78.77 7 A CYS 16 58.05 74.48 8 A PHE 2 -178.24 146.01 8 A ARG 9 -60.01 79.98 9 A ARG 4 -161.10 -24.89 9 A ARG 9 -63.42 78.51 9 A ARG 13 -161.11 26.70 9 A CYS 14 58.61 81.49 10 A LEU 6 -113.27 55.33 10 A ARG 9 -61.36 78.21 11 A ARG 9 -63.62 77.69 11 A CYS 12 -109.98 52.32 11 A ARG 13 -158.97 61.97 11 A CYS 14 56.55 82.83 12 A ARG 9 -65.87 77.95 13 A PHE 2 -177.43 146.61 13 A CYS 7 -51.71 107.80 13 A ARG 9 -66.04 81.10 13 A ARG 13 179.67 -16.21 13 A CYS 16 72.13 146.68 14 A ARG 9 -63.18 79.76 14 A CYS 14 -64.82 94.41 14 A CYS 16 76.92 143.96 15 A ARG 9 -67.41 80.07 16 A PHE 2 -171.08 142.65 16 A CYS 5 -107.56 44.79 16 A CYS 7 68.93 152.78 16 A ARG 9 -62.44 78.94 17 A ARG 9 -66.23 79.72 17 A CYS 16 63.93 100.81 18 A ARG 9 -64.32 79.40 19 A PHE 2 -172.95 139.64 19 A CYS 7 71.65 149.18 19 A ARG 9 -65.26 82.34 19 A CYS 14 68.02 131.11 20 A PHE 2 -172.37 148.48 20 A ARG 9 -67.33 79.30 RTD-1, A CYCLIC ANTIMICROBIAL DEFENSIN FROM RHESUS MACAQUE LEUKOCYTES 1 N N disulf 2.031 A CYS 3 A SG CYS 3 1_555 A CYS 16 A SG CYS 16 1_555 disulf 2.031 A CYS 5 A SG CYS 5 1_555 A CYS 14 A SG CYS 14 1_555 disulf 2.031 A CYS 7 A SG CYS 7 1_555 A CYS 12 A SG CYS 12 1_555 covale 1.325 both A GLY 1 A N GLY 1 1_555 A ARG 18 A C ARG 18 1_555 ANTIMICROBIAL PROTEIN cyclic, beta-sheet, disulfide-rich, ANTIMICROBIAL PROTEIN C59089 GB 1 7 7512249 7 18 1HVZ 1 12 7512249 A 1 1 12 1 6 1HVZ 13 18 7512249 A 1 13 18 2 anti-parallel A CYS 5 A CYS 5 A ARG 8 A ARG 8 A VAL 11 A VAL 11 A CYS 14 A CYS 14 1 P 1