1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Craik, D.J.
Trabi, M.
Schirra, H.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
40
4211
4221
10.1021/bi002028t
11284676
Three-dimensional structure of RTD-1, a cyclic antimicrobial defensin from Rhesus macaque leukocytes.
2001
10.2210/pdb1hvz/pdb
pdb_00001hvz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2110.668
THETA DEFENSIN 1
1
syn
polymer
RTD-1
no
no
GFCRCLCRRGVCRCICTR
GFCRCLCRRGVCRCICTR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-05-30
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
SEQUENCE
RESIDUES NUMBERED ACCORDING TO TANG ET AL., SCIENCE 286 (1999), PP. 498-502
RCSB
Y
RCSB
2001-01-09
REL
REL
The peptide was chemically synthesized. This sequence occurs naturally in rhesus macaques (mucaca mulatta)
sample
This structure was determined using standard 2D homonuclear techniques.
structures with the least restraint violations,structures with the lowest energy
100
20
2D NOESY
DQF-COSY
DQF-COSY
20mM sodium phosphate
4.5
ambient
310
K
20mM sodium phosphate
4.5
ambient
300
K
20mM sodium phosphate
4.5
ambient
280
K
The structures are based on a total of 94 restraints, 87 are NOE-derived distance constraints, 7 dihedral angle restraints
torsion angle dynamics, simulated annealing, explicit inclusion of water molecules
1mM RTD-1, 20mM sodium phosphate pH 4.5, 80% H2O, 10% D2O, 10% acetonitrile-d3
80% H2O, 10% D2O, 10% acetonitrile-d3
1mM RTD-1, 20mM sodium phosphate pH 4.5, 90% H2O, 10% D2O
90% H2O/10% D2O
1mM RTD-1, 20mM sodium phosphate pH 4.5, 99% D2O
99% D2O
Bruker
collection
XwinNMR
2.6
Bruker
processing
XwinNMR
2.6
Cieslar, Kalus & Holak
data analysis
CCNMR
Brunger
structure solution
X-PLOR
3.851
Brunger
structure solution
CNS
1.0
Brunger
refinement
CNS
1.0
750
Bruker
DMX
500
Bruker
ARX
GLY
1
n
1
GLY
1
A
PHE
2
n
2
PHE
2
A
CYS
3
n
3
CYS
3
A
ARG
4
n
4
ARG
4
A
CYS
5
n
5
CYS
5
A
LEU
6
n
6
LEU
6
A
CYS
7
n
7
CYS
7
A
ARG
8
n
8
ARG
8
A
ARG
9
n
9
ARG
9
A
GLY
10
n
10
GLY
10
A
VAL
11
n
11
VAL
11
A
CYS
12
n
12
CYS
12
A
ARG
13
n
13
ARG
13
A
CYS
14
n
14
CYS
14
A
ILE
15
n
15
ILE
15
A
CYS
16
n
16
CYS
16
A
THR
17
n
17
THR
17
A
ARG
18
n
18
ARG
18
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
8
A
N
ARG
8
A
O
VAL
11
A
O
VAL
11
6
A
A
HA
HA
CYS
CYS
5
14
1.19
1
A
ARG
9
-62.53
79.33
2
A
LEU
6
-106.65
69.01
2
A
ARG
9
-60.82
79.60
2
A
CYS
14
-110.16
58.55
3
A
ARG
9
-61.77
78.36
4
A
CYS
5
-118.43
66.83
4
A
CYS
7
69.83
146.59
4
A
ARG
9
-63.76
80.62
4
A
CYS
12
-96.82
55.37
4
A
CYS
14
65.52
174.42
5
A
PHE
2
-178.26
135.51
5
A
ARG
9
-61.78
79.09
6
A
ARG
4
-122.44
-64.57
6
A
ARG
9
-67.61
80.93
6
A
ARG
13
-103.79
79.33
7
A
ARG
9
-65.13
78.77
7
A
CYS
16
58.05
74.48
8
A
PHE
2
-178.24
146.01
8
A
ARG
9
-60.01
79.98
9
A
ARG
4
-161.10
-24.89
9
A
ARG
9
-63.42
78.51
9
A
ARG
13
-161.11
26.70
9
A
CYS
14
58.61
81.49
10
A
LEU
6
-113.27
55.33
10
A
ARG
9
-61.36
78.21
11
A
ARG
9
-63.62
77.69
11
A
CYS
12
-109.98
52.32
11
A
ARG
13
-158.97
61.97
11
A
CYS
14
56.55
82.83
12
A
ARG
9
-65.87
77.95
13
A
PHE
2
-177.43
146.61
13
A
CYS
7
-51.71
107.80
13
A
ARG
9
-66.04
81.10
13
A
ARG
13
179.67
-16.21
13
A
CYS
16
72.13
146.68
14
A
ARG
9
-63.18
79.76
14
A
CYS
14
-64.82
94.41
14
A
CYS
16
76.92
143.96
15
A
ARG
9
-67.41
80.07
16
A
PHE
2
-171.08
142.65
16
A
CYS
5
-107.56
44.79
16
A
CYS
7
68.93
152.78
16
A
ARG
9
-62.44
78.94
17
A
ARG
9
-66.23
79.72
17
A
CYS
16
63.93
100.81
18
A
ARG
9
-64.32
79.40
19
A
PHE
2
-172.95
139.64
19
A
CYS
7
71.65
149.18
19
A
ARG
9
-65.26
82.34
19
A
CYS
14
68.02
131.11
20
A
PHE
2
-172.37
148.48
20
A
ARG
9
-67.33
79.30
RTD-1, A CYCLIC ANTIMICROBIAL DEFENSIN FROM RHESUS MACAQUE LEUKOCYTES
1
N
N
disulf
2.031
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
16
A
SG
CYS
16
1_555
disulf
2.031
A
CYS
5
A
SG
CYS
5
1_555
A
CYS
14
A
SG
CYS
14
1_555
disulf
2.031
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
12
A
SG
CYS
12
1_555
covale
1.325
both
A
GLY
1
A
N
GLY
1
1_555
A
ARG
18
A
C
ARG
18
1_555
ANTIMICROBIAL PROTEIN
cyclic, beta-sheet, disulfide-rich, ANTIMICROBIAL PROTEIN
C59089
GB
1
7
7512249
7
18
1HVZ
1
12
7512249
A
1
1
12
1
6
1HVZ
13
18
7512249
A
1
13
18
2
anti-parallel
A
CYS
5
A
CYS
5
A
ARG
8
A
ARG
8
A
VAL
11
A
VAL
11
A
CYS
14
A
CYS
14
1
P 1