0.013514
0.007802
0.000000
0.000000
0.015604
0.000000
0.000000
0.000000
0.005222
0.00000
0.00000
0.00000
Pascal, J.M.
Day, P.J.
Monzingo, A.F.
Ernst, S.R.
Robertus, J.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
74.000
74.000
191.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-glucopyranose
alpha-D-glucose; D-glucose; glucose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
R
C
N
113
R
C
N
114
S
C
N
115
R
C
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
S
C
N
137
R
C
N
138
S
C
N
139
S
C
N
140
R
C
N
141
N
C
N
142
N
O
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
N
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
Y
214
N
C
Y
215
N
N
Y
216
N
C
Y
217
N
C
Y
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
S
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
N
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
S
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
R
C
N
323
R
C
N
324
R
C
N
325
S
C
N
326
R
C
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
N
N
331
N
O
N
332
N
O
N
333
N
O
N
334
N
O
N
335
N
O
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
R
C
N
411
N
O
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
N
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
N
461
N
O
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
N
479
N
C
N
480
N
C
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
Y
212
N
sing
Y
213
N
doub
Y
214
N
doub
N
215
N
sing
Y
216
N
sing
N
217
N
sing
Y
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
Y
447
N
doub
Y
448
N
sing
Y
449
N
sing
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
doub
N
454
N
sing
Y
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
US
Proteins
PSFGEY
0867
0887-3585
43
319
326
10.1002/prot.1043
11288182
2.8-A crystal structure of a nontoxic type-II ribosome-inactivating protein, ebulin l.
2001
10.2210/pdb1hwo/pdb
pdb_00001hwo
GLC C 1 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
150.0
1
IMAGE PLATE
1999-02-15
RIGAKU RAXIS IV
Double focusing mirrors, (Ni + Pt) + Ni filters
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RU200
N-GLYCOSIDASE
28478.982
EBULIN
3.2.2.22
1
nat
polymer
GALACTOSIDE SPECIFIC LECTIN
29377.898
EBULIN
3.2.2.22
1
nat
polymer
342.297
beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
1
man
branched
586.542
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
37
nat
water
EBULIN A CHAIN
EBULIN B CHAIN
alpha-lactose
no
no
IDYPSVSFNLAGAKSTTYRDFLKNLRDRVATGTYEVNGLPVLRRESEVQVKNRFVLVRLTNYNGDTVTSAVDVTNLYLVA
FSANGNSYFFKDATELQKSNLFLGTTQHTLSFTGNYDNLETAAGTRRESIELGPNPLDGAITSLWYDGGVARSLLVLIQM
VPEAARFRYIEQEVRRSLQQLTSFTPNALMLSMENNWSSMSLEVQLSGDNVSPFSGTVQLQNYDHTPRLVDNFEELYKIT
GIAILLFRCVATKT
IDYPSVSFNLAGAKSTTYRDFLKNLRDRVATGTYEVNGLPVLRRESEVQVKNRFVLVRLTNYNGDTVTSAVDVTNLYLVA
FSANGNSYFFKDATELQKSNLFLGTTQHTLSFTGNYDNLETAAGTRRESIELGPNPLDGAITSLWYDGGVARSLLVLIQM
VPEAARFRYIEQEVRRSLQQLTSFTPNALMLSMENNWSSMSLEVQLSGDNVSPFSGTVQLQNYDHTPRLVDNFEELYKIT
GIAILLFRCVATKT
A
polypeptide(L)
no
no
DGETCAIPAPFTRRIVGRDGLCVDVRNGYDTDGTPIQLWPCGTQRNQQWTFYNDKTIRSMGKCMTANGLNSGSYIMITDC
STAAEDATKWEVLIDGSIINPSSGLVMTAPSGASRTTLLLENNIHAASQGWTVSNDVQPIATLIVGYNEMCLQANGENNN
VWMEDCDVTSVQQQWALFDDRTIRVNNSRGLCVTSNGYVSKDLIVIRKCQGLATQRWFFNSDGSVVNLKSTRVMDVKESD
VSLQEVIIFPATGNPNQQWRTQVPQI
DGETCAIPAPFTRRIVGRDGLCVDVRNGYDTDGTPIQLWPCGTQRNQQWTFYNDKTIRSMGKCMTANGLNSGSYIMITDC
STAAEDATKWEVLIDGSIINPSSGLVMTAPSGASRTTLLLENNIHAASQGWTVSNDVQPIATLIVGYNEMCLQANGENNN
VWMEDCDVTSVQQQWALFDDRTIRVNNSRGLCVTSNGYVSKDLIVIRKCQGLATQRWFFNSDGSVVNLKSTRVMDVKESD
VSLQEVIIFPATGNPNQQWRTQVPQI
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sambucus
sample
28503
Sambucus ebulus
LEAF
Sambucus
sample
28503
Sambucus ebulus
LEAF
1
2.62
52.97
VAPOR DIFFUSION, HANGING DROP
7.5
1.1 M Na,K Tartrate, 100mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
atom_site
chem_comp
database_PDB_caveat
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2001-01-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
2
0
2020-07-29
2
1
2023-08-09
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_seq_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
C
GLC
281
n
C
GLC
1
C
GAL
280
n
C
GAL
2
B
NAG
267
n
D
NAG
1
B
NAG
268
n
D
NAG
2
B
MAN
269
n
D
BMA
3
DManpb
b-D-mannopyranose
b-D-Manp
Man
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
1HWN is Ebulin complexed with galactose, trigonal crystal form
1HWM is Ebulin, orthorhombic crystal form, distorted 2gamma galactoside binding domain
RCSB
Y
RCSB
2001-01-09
REL
REL
oligosaccharide
oligosaccharide
DGalpb1-4DGlcpa1-ROH
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,2,1/[a2122h-1a_1-5][a2112h-1b_1-5]/1-2/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[][b-D-Glcp]{[(4+1)][b-D-Galp]{}}
3
PDB-CARE
LINUCS
DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
4
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1
4
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}
4
PDB-CARE
LINUCS
C1
O4
GAL
GLC
2
1
3
O1
HO4
sing
C1
O4
NAG
NAG
2
1
4
O1
HO4
sing
C1
O4
BMA
NAG
3
2
4
O1
HO4
sing
n
n
n
n
n
HOH
water
1HWM
Ebulin model (PDB 1HWM), orthorhombic crystal form
PDB
experimental model
Nutrient
oligosaccharide
alpha-lactose
Oligosaccharide
WAT
302
5
HOH
HOH
302
A
WAT
303
5
HOH
HOH
303
A
WAT
305
5
HOH
HOH
305
A
WAT
306
5
HOH
HOH
306
A
WAT
307
5
HOH
HOH
307
A
WAT
312
5
HOH
HOH
312
A
WAT
317
5
HOH
HOH
317
A
WAT
320
5
HOH
HOH
320
A
WAT
321
5
HOH
HOH
321
A
WAT
326
5
HOH
HOH
326
A
WAT
328
5
HOH
HOH
328
A
WAT
329
5
HOH
HOH
329
A
WAT
332
5
HOH
HOH
332
A
WAT
337
5
HOH
HOH
337
A
WAT
301
5
HOH
HOH
301
B
WAT
304
5
HOH
HOH
304
B
WAT
308
5
HOH
HOH
308
B
WAT
309
5
HOH
HOH
309
B
WAT
310
5
HOH
HOH
310
B
WAT
311
5
HOH
HOH
311
B
WAT
313
5
HOH
HOH
313
B
WAT
314
5
HOH
HOH
314
B
WAT
315
5
HOH
HOH
315
B
WAT
316
5
HOH
HOH
316
B
WAT
318
5
HOH
HOH
318
B
WAT
319
5
HOH
HOH
319
B
WAT
322
5
HOH
HOH
322
B
WAT
323
5
HOH
HOH
323
B
WAT
324
5
HOH
HOH
324
B
WAT
325
5
HOH
HOH
325
B
WAT
327
5
HOH
HOH
327
B
WAT
330
5
HOH
HOH
330
B
WAT
331
5
HOH
HOH
331
B
WAT
333
5
HOH
HOH
333
B
WAT
334
5
HOH
HOH
334
B
WAT
335
5
HOH
HOH
335
B
WAT
336
5
HOH
HOH
336
B
ILE
1
n
1
ILE
1
A
ASP
2
n
2
ASP
2
A
TYR
3
n
3
TYR
3
A
PRO
4
n
4
PRO
4
A
SER
5
n
5
SER
5
A
VAL
6
n
6
VAL
6
A
SER
7
n
7
SER
7
A
PHE
8
n
8
PHE
8
A
ASN
9
n
9
ASN
9
A
LEU
10
n
10
LEU
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
ALA
13
n
13
ALA
13
A
LYS
14
n
14
LYS
14
A
SER
15
n
15
SER
15
A
THR
16
n
16
THR
16
A
THR
17
n
17
THR
17
A
TYR
18
n
18
TYR
18
A
ARG
19
n
19
ARG
19
A
ASP
20
n
20
ASP
20
A
PHE
21
n
21
PHE
21
A
LEU
22
n
22
LEU
22
A
LYS
23
n
23
LYS
23
A
ASN
24
n
24
ASN
24
A
LEU
25
n
25
LEU
25
A
ARG
26
n
26
ARG
26
A
ASP
27
n
27
ASP
27
A
ARG
28
n
28
ARG
28
A
VAL
29
n
29
VAL
29
A
ALA
30
n
30
ALA
30
A
THR
31
n
31
THR
31
A
GLY
32
n
32
GLY
32
A
THR
33
n
33
THR
33
A
TYR
34
n
34
TYR
34
A
GLU
35
n
35
GLU
35
A
VAL
36
n
36
VAL
36
A
ASN
37
n
37
ASN
37
A
GLY
38
n
38
GLY
38
A
LEU
39
n
39
LEU
39
A
PRO
40
n
40
PRO
40
A
VAL
41
n
41
VAL
41
A
LEU
42
n
42
LEU
42
A
ARG
43
n
43
ARG
43
A
ARG
44
n
44
ARG
44
A
GLU
45
n
45
GLU
45
A
SER
46
n
46
SER
46
A
GLU
47
n
47
GLU
47
A
VAL
48
n
48
VAL
48
A
GLN
49
n
49
GLN
49
A
VAL
50
n
50
VAL
50
A
LYS
51
n
51
LYS
51
A
ASN
52
n
52
ASN
52
A
ARG
53
n
53
ARG
53
A
PHE
54
n
54
PHE
54
A
VAL
55
n
55
VAL
55
A
LEU
56
n
56
LEU
56
A
VAL
57
n
57
VAL
57
A
ARG
58
n
58
ARG
58
A
LEU
59
n
59
LEU
59
A
THR
60
n
60
THR
60
A
ASN
61
n
61
ASN
61
A
TYR
62
n
62
TYR
62
A
ASN
63
n
63
ASN
63
A
GLY
64
n
64
GLY
64
A
ASP
65
n
65
ASP
65
A
THR
66
n
66
THR
66
A
VAL
67
n
67
VAL
67
A
THR
68
n
68
THR
68
A
SER
69
n
69
SER
69
A
ALA
70
n
70
ALA
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
VAL
73
n
73
VAL
73
A
THR
74
n
74
THR
74
A
ASN
75
n
75
ASN
75
A
LEU
76
n
76
LEU
76
A
TYR
77
n
77
TYR
77
A
LEU
78
n
78
LEU
78
A
VAL
79
n
79
VAL
79
A
ALA
80
n
80
ALA
80
A
PHE
81
n
81
PHE
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
ASN
84
n
84
ASN
84
A
GLY
85
n
85
GLY
85
A
ASN
86
n
86
ASN
86
A
SER
87
n
87
SER
87
A
TYR
88
n
88
TYR
88
A
PHE
89
n
89
PHE
89
A
PHE
90
n
90
PHE
90
A
LYS
91
n
91
LYS
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
THR
94
n
94
THR
94
A
GLU
95
n
95
GLU
95
A
LEU
96
n
96
LEU
96
A
GLN
97
n
97
GLN
97
A
LYS
98
n
98
LYS
98
A
SER
99
n
99
SER
99
A
ASN
100
n
100
ASN
100
A
LEU
101
n
101
LEU
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
THR
105
n
105
THR
105
A
THR
106
n
106
THR
106
A
GLN
107
n
107
GLN
107
A
HIS
108
n
108
HIS
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
SER
111
n
111
SER
111
A
PHE
112
n
112
PHE
112
A
THR
113
n
113
THR
113
A
GLY
114
n
114
GLY
114
A
ASN
115
n
115
ASN
115
A
TYR
116
n
116
TYR
116
A
ASP
117
n
117
ASP
117
A
ASN
118
n
118
ASN
118
A
LEU
119
n
119
LEU
119
A
GLU
120
n
120
GLU
120
A
THR
121
n
121
THR
121
A
ALA
122
n
122
ALA
122
A
ALA
123
n
123
ALA
123
A
GLY
124
n
124
GLY
124
A
THR
125
n
125
THR
125
A
ARG
126
n
126
ARG
126
A
ARG
127
n
127
ARG
127
A
GLU
128
n
128
GLU
128
A
SER
129
n
129
SER
129
A
ILE
130
n
130
ILE
130
A
GLU
131
n
131
GLU
131
A
LEU
132
n
132
LEU
132
A
GLY
133
n
133
GLY
133
A
PRO
134
n
134
PRO
134
A
ASN
135
n
135
ASN
135
A
PRO
136
n
136
PRO
136
A
LEU
137
n
137
LEU
137
A
ASP
138
n
138
ASP
138
A
GLY
139
n
139
GLY
139
A
ALA
140
n
140
ALA
140
A
ILE
141
n
141
ILE
141
A
THR
142
n
142
THR
142
A
SER
143
n
143
SER
143
A
LEU
144
n
144
LEU
144
A
TRP
145
n
145
TRP
145
A
TYR
146
n
146
TYR
146
A
ASP
147
n
147
ASP
147
A
GLY
148
n
148
GLY
148
A
GLY
149
n
149
GLY
149
A
VAL
150
n
150
VAL
150
A
ALA
151
n
151
ALA
151
A
ARG
152
n
152
ARG
152
A
SER
153
n
153
SER
153
A
LEU
154
n
154
LEU
154
A
LEU
155
n
155
LEU
155
A
VAL
156
n
156
VAL
156
A
LEU
157
n
157
LEU
157
A
ILE
158
n
158
ILE
158
A
GLN
159
n
159
GLN
159
A
MET
160
n
160
MET
160
A
VAL
161
n
161
VAL
161
A
PRO
162
n
162
PRO
162
A
GLU
163
n
163
GLU
163
A
ALA
164
n
164
ALA
164
A
ALA
165
n
165
ALA
165
A
ARG
166
n
166
ARG
166
A
PHE
167
n
167
PHE
167
A
ARG
168
n
168
ARG
168
A
TYR
169
n
169
TYR
169
A
ILE
170
n
170
ILE
170
A
GLU
171
n
171
GLU
171
A
GLN
172
n
172
GLN
172
A
GLU
173
n
173
GLU
173
A
VAL
174
n
174
VAL
174
A
ARG
175
n
175
ARG
175
A
ARG
176
n
176
ARG
176
A
SER
177
n
177
SER
177
A
LEU
178
n
178
LEU
178
A
GLN
179
n
179
GLN
179
A
GLN
180
n
180
GLN
180
A
LEU
181
n
181
LEU
181
A
THR
182
n
182
THR
182
A
SER
183
n
183
SER
183
A
PHE
184
n
184
PHE
184
A
THR
185
n
185
THR
185
A
PRO
186
n
186
PRO
186
A
ASN
187
n
187
ASN
187
A
ALA
188
n
188
ALA
188
A
LEU
189
n
189
LEU
189
A
MET
190
n
190
MET
190
A
LEU
191
n
191
LEU
191
A
SER
192
n
192
SER
192
A
MET
193
n
193
MET
193
A
GLU
194
n
194
GLU
194
A
ASN
195
n
195
ASN
195
A
ASN
196
n
196
ASN
196
A
TRP
197
n
197
TRP
197
A
SER
198
n
198
SER
198
A
SER
199
n
199
SER
199
A
MET
200
n
200
MET
200
A
SER
201
n
201
SER
201
A
LEU
202
n
202
LEU
202
A
GLU
203
n
203
GLU
203
A
VAL
204
n
204
VAL
204
A
GLN
205
n
205
GLN
205
A
LEU
206
n
206
LEU
206
A
SER
207
n
207
SER
207
A
GLY
208
n
208
GLY
208
A
ASP
209
n
209
ASP
209
A
ASN
210
n
210
ASN
210
A
VAL
211
n
211
VAL
211
A
SER
212
n
212
SER
212
A
PRO
213
n
213
PRO
213
A
PHE
214
n
214
PHE
214
A
SER
215
n
215
SER
215
A
GLY
216
n
216
GLY
216
A
THR
217
n
217
THR
217
A
VAL
218
n
218
VAL
218
A
GLN
219
n
219
GLN
219
A
LEU
220
n
220
LEU
220
A
GLN
221
n
221
GLN
221
A
ASN
222
n
222
ASN
222
A
TYR
223
n
223
TYR
223
A
ASP
224
n
224
ASP
224
A
HIS
225
n
225
HIS
225
A
THR
226
n
226
THR
226
A
PRO
227
n
227
PRO
227
A
ARG
228
n
228
ARG
228
A
LEU
229
n
229
LEU
229
A
VAL
230
n
230
VAL
230
A
ASP
231
n
231
ASP
231
A
ASN
232
n
232
ASN
232
A
PHE
233
n
233
PHE
233
A
GLU
234
n
234
GLU
234
A
GLU
235
n
235
GLU
235
A
LEU
236
n
236
LEU
236
A
TYR
237
n
237
TYR
237
A
LYS
238
n
238
LYS
238
A
ILE
239
n
239
ILE
239
A
THR
240
n
240
THR
240
A
GLY
241
n
241
GLY
241
A
ILE
242
n
242
ILE
242
A
ALA
243
n
243
ALA
243
A
ILE
244
n
244
ILE
244
A
LEU
245
n
245
LEU
245
A
LEU
246
n
246
LEU
246
A
PHE
247
n
247
PHE
247
A
ARG
248
n
248
ARG
248
A
CYS
249
n
249
CYS
249
A
VAL
250
n
250
VAL
250
A
ALA
251
n
251
ALA
251
A
THR
252
n
252
THR
252
A
n
253
253
A
n
254
254
A
n
1
1
B
GLY
2
n
2
GLY
2
B
GLU
3
n
3
GLU
3
B
THR
4
n
4
THR
4
B
CYS
5
n
5
CYS
5
B
ALA
6
n
6
ALA
6
B
ILE
7
n
7
ILE
7
B
PRO
8
n
8
PRO
8
B
ALA
9
n
9
ALA
9
B
PRO
10
n
10
PRO
10
B
PHE
11
n
11
PHE
11
B
THR
12
n
12
THR
12
B
ARG
13
n
13
ARG
13
B
ARG
14
n
14
ARG
14
B
ILE
15
n
15
ILE
15
B
VAL
16
n
16
VAL
16
B
GLY
17
n
17
GLY
17
B
ARG
18
n
18
ARG
18
B
ASP
19
n
19
ASP
19
B
GLY
20
n
20
GLY
20
B
LEU
21
n
21
LEU
21
B
CYS
22
n
22
CYS
22
B
VAL
23
n
23
VAL
23
B
ASP
24
n
24
ASP
24
B
VAL
25
n
25
VAL
25
B
ARG
26
n
26
ARG
26
B
ASN
27
n
27
ASN
27
B
GLY
28
n
28
GLY
28
B
TYR
29
n
29
TYR
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
ASP
32
n
32
ASP
32
B
GLY
33
n
33
GLY
33
B
THR
34
n
34
THR
34
B
PRO
35
n
35
PRO
35
B
ILE
36
n
36
ILE
36
B
GLN
37
n
37
GLN
37
B
LEU
38
n
38
LEU
38
B
TRP
39
n
39
TRP
39
B
PRO
40
n
40
PRO
40
B
CYS
41
n
41
CYS
41
B
GLY
42
n
42
GLY
42
B
THR
43
n
43
THR
43
B
GLN
44
n
44
GLN
44
B
ARG
45
n
45
ARG
45
B
ASN
46
n
46
ASN
46
B
GLN
47
n
47
GLN
47
B
GLN
48
n
48
GLN
48
B
TRP
49
n
49
TRP
49
B
THR
50
n
50
THR
50
B
PHE
51
n
51
PHE
51
B
TYR
52
n
52
TYR
52
B
ASN
53
n
53
ASN
53
B
ASP
54
n
54
ASP
54
B
LYS
55
n
55
LYS
55
B
THR
56
n
56
THR
56
B
ILE
57
n
57
ILE
57
B
ARG
58
n
58
ARG
58
B
SER
59
n
59
SER
59
B
MET
60
n
60
MET
60
B
GLY
61
n
61
GLY
61
B
LYS
62
n
62
LYS
62
B
CYS
63
n
63
CYS
63
B
MET
64
n
64
MET
64
B
THR
65
n
65
THR
65
B
ALA
66
n
66
ALA
66
B
ASN
67
n
67
ASN
67
B
GLY
68
n
68
GLY
68
B
LEU
69
n
69
LEU
69
B
ASN
70
n
70
ASN
70
B
SER
71
n
71
SER
71
B
GLY
72
n
72
GLY
72
B
SER
73
n
73
SER
73
B
TYR
74
n
74
TYR
74
B
ILE
75
n
75
ILE
75
B
MET
76
n
76
MET
76
B
ILE
77
n
77
ILE
77
B
THR
78
n
78
THR
78
B
ASP
79
n
79
ASP
79
B
CYS
80
n
80
CYS
80
B
SER
81
n
81
SER
81
B
THR
82
n
82
THR
82
B
ALA
83
n
83
ALA
83
B
ALA
84
n
84
ALA
84
B
GLU
85
n
85
GLU
85
B
ASP
86
n
86
ASP
86
B
ALA
87
n
87
ALA
87
B
THR
88
n
88
THR
88
B
LYS
89
n
89
LYS
89
B
TRP
90
n
90
TRP
90
B
GLU
91
n
91
GLU
91
B
VAL
92
n
92
VAL
92
B
LEU
93
n
93
LEU
93
B
ILE
94
n
94
ILE
94
B
ASP
95
n
95
ASP
95
B
GLY
96
n
96
GLY
96
B
SER
97
n
97
SER
97
B
ILE
98
n
98
ILE
98
B
ILE
99
n
99
ILE
99
B
ASN
100
n
100
ASN
100
B
PRO
101
n
101
PRO
101
B
SER
102
n
102
SER
102
B
SER
103
n
103
SER
103
B
GLY
104
n
104
GLY
104
B
LEU
105
n
105
LEU
105
B
VAL
106
n
106
VAL
106
B
MET
107
n
107
MET
107
B
THR
108
n
108
THR
108
B
ALA
109
n
109
ALA
109
B
PRO
110
n
110
PRO
110
B
SER
111
n
111
SER
111
B
GLY
112
n
112
GLY
112
B
ALA
113
n
113
ALA
113
B
SER
114
n
114
SER
114
B
ARG
115
n
115
ARG
115
B
THR
116
n
116
THR
116
B
THR
117
n
117
THR
117
B
LEU
118
n
118
LEU
118
B
LEU
119
n
119
LEU
119
B
LEU
120
n
120
LEU
120
B
GLU
121
n
121
GLU
121
B
ASN
122
n
122
ASN
122
B
ASN
123
n
123
ASN
123
B
ILE
124
n
124
ILE
124
B
HIS
125
n
125
HIS
125
B
ALA
126
n
126
ALA
126
B
ALA
127
n
127
ALA
127
B
SER
128
n
128
SER
128
B
GLN
129
n
129
GLN
129
B
GLY
130
n
130
GLY
130
B
TRP
131
n
131
TRP
131
B
THR
132
n
132
THR
132
B
VAL
133
n
133
VAL
133
B
SER
134
n
134
SER
134
B
ASN
135
n
135
ASN
135
B
ASP
136
n
136
ASP
136
B
VAL
137
n
137
VAL
137
B
GLN
138
n
138
GLN
138
B
PRO
139
n
139
PRO
139
B
ILE
140
n
140
ILE
140
B
ALA
141
n
141
ALA
141
B
THR
142
n
142
THR
142
B
LEU
143
n
143
LEU
143
B
ILE
144
n
144
ILE
144
B
VAL
145
n
145
VAL
145
B
GLY
146
n
146
GLY
146
B
TYR
147
n
147
TYR
147
B
ASN
148
n
148
ASN
148
B
GLU
149
n
149
GLU
149
B
MET
150
n
150
MET
150
B
CYS
151
n
151
CYS
151
B
LEU
152
n
152
LEU
152
B
GLN
153
n
153
GLN
153
B
ALA
154
n
154
ALA
154
B
ASN
155
n
155
ASN
155
B
GLY
156
n
156
GLY
156
B
GLU
157
n
157
GLU
157
B
ASN
158
n
158
ASN
158
B
ASN
159
n
159
ASN
159
B
ASN
160
n
160
ASN
160
B
VAL
161
n
161
VAL
161
B
TRP
162
n
162
TRP
162
B
MET
163
n
163
MET
163
B
GLU
164
n
164
GLU
164
B
ASP
165
n
165
ASP
165
B
CYS
166
n
166
CYS
166
B
ASP
167
n
167
ASP
167
B
VAL
168
n
168
VAL
168
B
THR
169
n
169
THR
169
B
SER
170
n
170
SER
170
B
VAL
171
n
171
VAL
171
B
GLN
172
n
172
GLN
172
B
GLN
173
n
173
GLN
173
B
GLN
174
n
174
GLN
174
B
TRP
175
n
175
TRP
175
B
ALA
176
n
176
ALA
176
B
LEU
177
n
177
LEU
177
B
PHE
178
n
178
PHE
178
B
ASP
179
n
179
ASP
179
B
ASP
180
n
180
ASP
180
B
ARG
181
n
181
ARG
181
B
THR
182
n
182
THR
182
B
ILE
183
n
183
ILE
183
B
ARG
184
n
184
ARG
184
B
VAL
185
n
185
VAL
185
B
ASN
186
n
186
ASN
186
B
ASN
187
n
187
ASN
187
B
SER
188
n
188
SER
188
B
ARG
189
n
189
ARG
189
B
GLY
190
n
190
GLY
190
B
LEU
191
n
191
LEU
191
B
CYS
192
n
192
CYS
192
B
VAL
193
n
193
VAL
193
B
THR
194
n
194
THR
194
B
SER
195
n
195
SER
195
B
ASN
196
n
196
ASN
196
B
GLY
197
n
197
GLY
197
B
TYR
198
n
198
TYR
198
B
VAL
199
n
199
VAL
199
B
SER
200
n
200
SER
200
B
LYS
201
n
201
LYS
201
B
ASP
202
n
202
ASP
202
B
LEU
203
n
203
LEU
203
B
ILE
204
n
204
ILE
204
B
VAL
205
n
205
VAL
205
B
ILE
206
n
206
ILE
206
B
ARG
207
n
207
ARG
207
B
LYS
208
n
208
LYS
208
B
CYS
209
n
209
CYS
209
B
GLN
210
n
210
GLN
210
B
GLY
211
n
211
GLY
211
B
LEU
212
n
212
LEU
212
B
ALA
213
n
213
ALA
213
B
THR
214
n
214
THR
214
B
GLN
215
n
215
GLN
215
B
ARG
216
n
216
ARG
216
B
TRP
217
n
217
TRP
217
B
PHE
218
n
218
PHE
218
B
PHE
219
n
219
PHE
219
B
ASN
220
n
220
ASN
220
B
SER
221
n
221
SER
221
B
ASP
222
n
222
ASP
222
B
GLY
223
n
223
GLY
223
B
SER
224
n
224
SER
224
B
VAL
225
n
225
VAL
225
B
VAL
226
n
226
VAL
226
B
ASN
227
n
227
ASN
227
B
LEU
228
n
228
LEU
228
B
LYS
229
n
229
LYS
229
B
SER
230
n
230
SER
230
B
THR
231
n
231
THR
231
B
ARG
232
n
232
ARG
232
B
VAL
233
n
233
VAL
233
B
MET
234
n
234
MET
234
B
ASP
235
n
235
ASP
235
B
VAL
236
n
236
VAL
236
B
LYS
237
n
237
LYS
237
B
GLU
238
n
238
GLU
238
B
SER
239
n
239
SER
239
B
ASP
240
n
240
ASP
240
B
VAL
241
n
241
VAL
241
B
SER
242
n
242
SER
242
B
LEU
243
n
243
LEU
243
B
GLN
244
n
244
GLN
244
B
GLU
245
n
245
GLU
245
B
VAL
246
n
246
VAL
246
B
ILE
247
n
247
ILE
247
B
ILE
248
n
248
ILE
248
B
PHE
249
n
249
PHE
249
B
PRO
250
n
250
PRO
250
B
ALA
251
n
251
ALA
251
B
THR
252
n
252
THR
252
B
GLY
253
n
253
GLY
253
B
ASN
254
n
254
ASN
254
B
PRO
255
n
255
PRO
255
B
ASN
256
n
256
ASN
256
B
GLN
257
n
257
GLN
257
B
GLN
258
n
258
GLN
258
B
TRP
259
n
259
TRP
259
B
ARG
260
n
260
ARG
260
B
THR
261
n
261
THR
261
B
GLN
262
n
262
GLN
262
B
VAL
263
n
263
VAL
263
B
PRO
264
n
264
PRO
264
B
n
265
265
B
n
266
266
B
author_and_software_defined_assembly
PISA
2
dimeric
4120
-2
20680
B
ASN
186
GLYCOSYLATION SITE
B
ASN
186
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
6
A
N
VAL
6
A
O
LEU
56
A
O
LEU
56
A
N
LEU
59
A
N
LEU
59
A
O
VAL
67
A
O
VAL
67
A
O
ALA
70
A
O
ALA
70
A
N
VAL
79
A
N
VAL
79
A
O
PHE
81
A
O
PHE
81
A
N
TYR
88
A
N
TYR
88
A
N
SER
87
A
N
SER
87
A
O
THR
106
A
O
THR
106
A
N
VAL
36
A
N
VAL
36
A
O
LEU
39
A
O
LEU
39
A
O
LEU
220
A
O
LEU
220
A
N
ARG
228
A
N
ARG
228
B
N
ARG
13
B
N
ARG
13
B
O
TRP
49
B
O
TRP
49
B
N
THR
50
B
N
THR
50
B
O
ARG
58
B
O
ARG
58
B
O
SER
59
B
O
SER
59
B
N
LYS
62
B
N
LYS
62
B
O
THR
65
B
O
THR
65
B
N
MET
76
B
N
MET
76
B
O
VAL
16
B
O
VAL
16
B
N
THR
132
B
N
THR
132
B
O
ASP
24
B
O
ASP
24
B
N
GLN
37
B
N
GLN
37
B
N
LEU
38
B
N
LEU
38
B
O
THR
116
B
O
THR
116
B
N
LEU
93
B
N
LEU
93
B
O
SER
97
B
O
SER
97
B
O
THR
108
B
O
THR
108
B
N
LEU
119
B
N
LEU
119
B
O
ARG
184
B
O
ARG
184
B
N
ALA
176
B
N
ALA
176
B
N
LEU
177
B
N
LEU
177
B
O
ILE
140
B
O
ILE
140
B
O
VAL
145
B
O
VAL
145
B
N
ARG
260
B
N
ARG
260
B
O
CYS
151
B
O
CYS
151
B
N
GLU
164
B
N
GLU
164
B
O
THR
194
B
O
THR
194
B
N
VAL
205
B
N
VAL
205
B
N
PHE
218
B
N
PHE
218
B
O
VAL
226
B
O
VAL
226
B
N
ASP
235
B
N
ASP
235
B
O
ILE
247
B
O
ILE
247
1
A
LYS
253
A
LYS
253
1
Y
1
A
THR
254
A
THR
254
1
Y
1
B
ASP
1
B
ASP
1
1
Y
1
B
GLN
265
B
GLN
265
1
Y
1
B
ILE
266
B
ILE
266
1
Y
1
C
C1
GLC
1
WRONG HAND
1
A
B
CG2
OH
THR
TYR
105
147
2.12
1_555
6_655
1
A
PHE
8
-161.06
97.09
1
A
ARG
28
-95.18
-69.04
1
A
ARG
43
-58.20
-176.63
1
A
ASN
63
-76.23
20.41
1
A
ASP
65
-56.17
108.04
1
A
ASN
75
-176.85
5.46
1
A
ALA
83
-167.98
116.08
1
A
ASN
84
39.73
78.15
1
A
ASP
92
-73.98
-82.66
1
A
ALA
93
52.79
106.55
1
A
ASN
100
-169.14
-1.19
1
A
LEU
110
-71.16
-140.40
1
A
SER
111
-150.18
31.59
1
A
GLU
128
-61.70
6.18
1
A
GLU
131
-37.18
134.90
1
A
TYR
146
-91.09
-68.51
1
A
ASP
147
-51.69
-9.50
1
A
VAL
161
-120.36
-74.46
1
A
HIS
225
75.23
-8.48
1
A
ALA
243
-150.23
6.39
1
A
ARG
248
-151.30
-39.48
1
B
GLU
3
-158.39
85.26
1
B
CYS
5
-70.91
-138.22
1
B
ARG
18
173.37
123.64
1
B
ASN
27
57.00
16.40
1
B
ASP
30
-67.41
6.37
1
B
LYS
55
93.04
40.77
1
B
CYS
63
-35.18
134.29
1
B
ASN
70
173.03
128.45
1
B
SER
71
-37.03
99.69
1
B
ASP
79
-35.81
135.94
1
B
ALA
87
-74.32
26.61
1
B
PRO
101
-32.63
-85.86
1
B
MET
107
-55.40
107.85
1
B
LEU
119
-173.36
136.66
1
B
HIS
125
63.53
76.04
1
B
GLN
129
-93.50
32.63
1
B
SER
134
-171.76
148.29
1
B
VAL
137
-69.05
5.66
1
B
ASN
148
38.24
50.91
1
B
GLU
149
46.10
24.50
1
B
ASN
155
-84.38
-124.10
1
B
ASN
158
68.28
-2.93
1
B
ASN
160
-71.81
-152.72
1
B
VAL
161
-170.49
112.23
1
B
VAL
168
-68.71
19.61
1
B
ARG
189
-75.32
28.29
1
B
VAL
205
-152.82
-154.47
1
B
ARG
207
-57.92
176.54
1
B
GLN
210
-151.59
-6.54
1
B
THR
231
-52.50
-8.50
1
B
SER
239
67.52
-21.38
1
B
ASP
240
-67.62
96.21
1
B
GLU
245
-173.29
126.09
1
B
ASN
256
-69.03
0.76
1
B
VAL
263
-49.20
172.22
0.339
0.237
2.9
30.0
518
12522
10424
5% of total reflections were randomly flagged
1
2.0
MOLECULAR REPLACEMENT
Ebulin model (PDB 1HWM), orthorhombic crystal form
Engh & Huber
2.9
30.0
37
4117
62
0
4018
0.003
0.658
27.685
2.9
30.0
1HWO
12522
12522
0.0
0.0
0.087
1
11.5
2.1
97.7
0.346
2.9
3.0
1
91.1
data scaling
SCALEPACK
phasing
EPMR
refinement
X-PLOR
3.851
EBULIN COMPLEXED WITH LACTOSE, TRIGONAL CRYSTAL FORM
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
LYS
14
A
LYS
14
HELX_P
A
ALA
30
A
ALA
30
1
1
17
A
GLN
49
A
GLN
49
HELX_P
A
ASN
52
A
ASN
52
5
2
4
A
THR
94
A
THR
94
HELX_P
A
SER
99
A
SER
99
1
3
6
A
ASN
115
A
ASN
115
HELX_P
A
GLY
124
A
GLY
124
1
4
10
A
ARG
126
A
ARG
126
HELX_P
A
ILE
130
A
ILE
130
5
5
5
A
GLY
133
A
GLY
133
HELX_P
A
TYR
146
A
TYR
146
1
6
14
A
VAL
150
A
VAL
150
HELX_P
A
VAL
161
A
VAL
161
1
7
12
A
VAL
161
A
VAL
161
HELX_P
A
PHE
167
A
PHE
167
1
8
7
A
PHE
167
A
PHE
167
HELX_P
A
GLN
180
A
GLN
180
1
9
14
A
ASN
187
A
ASN
187
HELX_P
A
ASN
196
A
ASN
196
1
10
10
A
ASN
196
A
ASN
196
HELX_P
A
GLY
208
A
GLY
208
1
11
13
A
PHE
233
A
PHE
233
HELX_P
A
GLY
241
A
GLY
241
1
12
9
B
ASN
27
B
ASN
27
HELX_P
B
TYR
29
B
TYR
29
5
13
3
B
ALA
126
B
ALA
126
HELX_P
B
GLY
130
B
GLY
130
5
14
5
B
GLY
146
B
GLY
146
HELX_P
B
MET
150
B
MET
150
5
15
5
B
SER
170
B
SER
170
HELX_P
B
GLN
173
B
GLN
173
5
16
4
B
LEU
212
B
LEU
212
HELX_P
B
GLN
215
B
GLN
215
5
17
4
B
GLU
238
B
GLU
238
HELX_P
B
GLN
244
B
GLN
244
5
18
7
B
ASN
254
B
ASN
254
HELX_P
B
GLN
258
B
GLN
258
5
19
5
disulf
2.031
A
CYS
249
A
SG
CYS
249
1_555
B
CYS
5
B
SG
CYS
5
1_555
disulf
2.030
B
CYS
22
B
SG
CYS
22
1_555
B
CYS
41
B
SG
CYS
41
1_555
disulf
2.028
B
CYS
63
B
SG
CYS
63
1_555
B
CYS
80
B
SG
CYS
80
1_555
disulf
2.031
B
CYS
151
B
SG
CYS
151
1_555
B
CYS
166
B
SG
CYS
166
1_555
disulf
2.030
B
CYS
192
B
SG
CYS
192
1_555
B
CYS
209
B
SG
CYS
209
1_555
covale
1.451
one
N-Glycosylation
B
ASN
186
B
ND2
ASN
186
1_555
D
NAG
1
D
C1
NAG
1_555
covale
1.395
both
C
GLC
1
C
O4
GLC
1_555
C
GAL
2
C
C1
GAL
1_555
covale
1.393
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
covale
1.396
both
D
NAG
2
D
O4
NAG
1_555
D
BMA
3
D
C1
BMA
1_555
HYDROLASE
Ribosome-inactivating protein, ricin-like, galactoside lectin, HYDROLASE
Q9AVR2_9DIPS
UNP
1
Q9AVR2
Q9AVR2_9DIPS
UNP
2
Q9AVR2
26
279
1HWO
1
254
Q9AVR2
A
1
1
254
299
564
1HWO
1
266
Q9AVR2
B
2
1
266
6
2
2
5
2
3
2
2
4
2
2
2
2
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
5
A
SER
5
A
ASN
9
A
ASN
9
A
PHE
54
A
PHE
54
A
THR
60
A
THR
60
A
THR
66
A
THR
66
A
ASP
72
A
ASP
72
A
LEU
78
A
LEU
78
A
SER
82
A
SER
82
A
ASN
86
A
ASN
86
A
PHE
89
A
PHE
89
A
THR
106
A
THR
106
A
GLN
107
A
GLN
107
A
GLU
35
A
GLU
35
A
VAL
36
A
VAL
36
A
LEU
39
A
LEU
39
A
PRO
40
A
PRO
40
A
PRO
213
A
PRO
213
A
GLN
221
A
GLN
221
A
PRO
227
A
PRO
227
A
ASN
232
A
ASN
232
B
PHE
11
B
PHE
11
B
ARG
13
B
ARG
13
B
TRP
49
B
TRP
49
B
PHE
51
B
PHE
51
B
ILE
57
B
ILE
57
B
SER
59
B
SER
59
B
LYS
62
B
LYS
62
B
ALA
66
B
ALA
66
B
ILE
75
B
ILE
75
B
ILE
77
B
ILE
77
B
ILE
15
B
ILE
15
B
VAL
16
B
VAL
16
B
THR
132
B
THR
132
B
VAL
133
B
VAL
133
B
LEU
21
B
LEU
21
B
VAL
25
B
VAL
25
B
ILE
36
B
ILE
36
B
PRO
40
B
PRO
40
B
THR
116
B
THR
116
B
THR
117
B
THR
117
B
GLU
91
B
GLU
91
B
LEU
93
B
LEU
93
B
SER
97
B
SER
97
B
ILE
99
B
ILE
99
B
VAL
106
B
VAL
106
B
THR
108
B
THR
108
B
LEU
119
B
LEU
119
B
GLU
121
B
GLU
121
B
THR
182
B
THR
182
B
VAL
185
B
VAL
185
B
TRP
175
B
TRP
175
B
PHE
178
B
PHE
178
B
ILE
140
B
ILE
140
B
VAL
145
B
VAL
145
B
ARG
260
B
ARG
260
B
GLN
262
B
GLN
262
B
CYS
151
B
CYS
151
B
LEU
152
B
LEU
152
B
MET
163
B
MET
163
B
GLU
164
B
GLU
164
B
THR
194
B
THR
194
B
SER
195
B
SER
195
B
ILE
204
B
ILE
204
B
VAL
205
B
VAL
205
B
TRP
217
B
TRP
217
B
PHE
219
B
PHE
219
B
VAL
225
B
VAL
225
B
ASN
227
B
ASN
227
B
VAL
233
B
VAL
233
B
VAL
236
B
VAL
236
B
VAL
246
B
VAL
246
B
PHE
249
B
PHE
249
154
P 32 2 1