1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Patel, D.J.
Lin, C.H.
Geacintov, N.E.
Broyde, S.
Huang, X.
Kolbanovskii, A.
Hingerty, B.E.
Amin, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C18 H16 O3
280.318
(1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL
1R-TRANS-ANTI-BENZO[C]PHENANTHRENE
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
306
1059
1080
10.1006/jmbi.2001.4425
11237618
Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity.
2001
10.2210/pdb1hx4/pdb
pdb_00001hx4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3254.138
5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3'
1
syn
polymer
3454.258
5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3'
1
syn
polymer
280.318
(1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL
1
syn
non-polymer
no
no
(DC)(DC)(DA)(DT)(DC)(DG)(DC)(DT)(DA)(DC)(DC)
CCATCGCTACC
A
polydeoxyribonucleotide
no
no
(DG)(DG)(DT)(DA)(DG)(DC)(DG)(DA)(DT)(DG)(DG)
GGTAGCGATGG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-9.922
1
19
A
1
B
22
0.771
A_DC1:DG22_B
1
-12.295
0.792
0.395
-0.331
-5.023
1
19
A
2
B
21
-3.216
A_DC2:DG21_B
2
-5.111
0.423
0.266
-0.268
5.496
1
20
A
3
B
20
-5.506
A_DA3:DT20_B
3
-13.796
0.129
0.055
-0.070
12.637
1
20
A
4
B
19
-7.300
A_DT4:DA19_B
4
-6.438
-0.172
-0.041
-0.061
5.017
1
19
A
5
B
18
-4.713
A_DC5:DG18_B
5
-12.948
0.604
-0.088
-0.289
27.294
1
19
A
6
B
17
-5.739
A_DG6:DC17_B
6
31.059
-0.852
0.200
-0.364
-19.486
1
19
A
7
B
16
-2.202
A_DC7:DG16_B
7
-3.812
0.495
0.652
-0.216
-2.011
1
20
A
8
B
15
2.425
A_DT8:DA15_B
8
7.088
-0.197
0.421
-0.119
7.123
1
20
A
9
B
14
-6.565
A_DA9:DT14_B
9
-20.665
-0.014
0.290
-0.174
-5.354
1
19
A
10
B
13
1.520
A_DC10:DG13_B
10
-12.091
0.750
0.177
-0.207
-13.005
1
19
A
11
B
12
-3.562
A_DC11:DG12_B
11
3.586
0.622
0.172
-0.330
2.915
35.065
A
A
1
2
-0.026
B
B
22
21
2.892
-0.016
0.428
-0.208
AA_DC1DC2:DG21DG22_BB
1
2.526
-4.196
34.977
-0.343
-0.374
1.604
29.233
A
A
2
3
29.409
B
B
21
20
2.631
14.188
-0.208
-1.368
AA_DC2DA3:DT20DG21_BB
2
3.983
-8.256
25.316
-4.855
1.014
2.721
31.887
A
A
3
4
11.552
B
B
20
19
2.902
6.306
-0.255
-0.604
AA_DA3DT4:DA19DT20_BB
3
1.077
-1.974
31.255
-2.097
0.634
3.293
43.091
A
A
4
5
0.800
B
B
19
18
3.237
0.586
0.689
0.052
AA_DT4DC5:DG18DA19_BB
4
4.881
-6.659
42.822
0.013
-0.457
2.922
27.841
A
A
5
6
-34.989
B
B
18
17
2.929
-15.351
0.650
-1.864
AA_DC5DG6:DC17DG18_BB
5
-11.161
25.440
20.463
-0.059
-4.127
2.635
28.583
A
A
7
8
10.593
B
B
16
15
2.704
5.194
0.143
-0.154
AA_DC7DT8:DA15DG16_BB
6
2.703
-5.512
27.989
-1.284
0.216
2.792
38.158
A
A
8
9
-12.993
B
B
15
14
2.885
-8.427
-0.754
-0.030
AA_DT8DA9:DT14DA15_BB
7
1.630
-2.514
37.216
0.890
1.335
3.296
39.276
A
A
9
10
-0.376
B
B
14
13
3.293
-0.252
0.328
-0.778
AA_DA9DC10:DG13DT14_BB
8
-0.221
0.328
39.274
-1.128
-0.514
3.142
38.542
A
A
10
11
4.606
B
B
13
12
3.191
3.035
0.372
-0.734
AA_DC10DC11:DG12DG13_BB
9
2.392
-3.629
38.355
-1.476
-0.276
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-03-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1S-trans-anti-(BPH)-N2-dG adduct, carcinogen-DNA adduct
RCSB
Y
RCSB
2001-01-11
REL
REL
BPJ
(1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL
Synthesized from ABI-DNA Synthesizer
sample
Synthesized from ABI-DNA Synthesizer
sample
D2O NMR experiments were performed at 13 degree C, H2O NMR experiments were performed at 4 degree C
structures with the lowest energy
9
9
2D NOESY
P-COSY
1H-31P HSQC
0.10
6.5
1
atm
277
K
Nonexchangeable interproton distance restraints were obtained from the buildup of NOE cross peak volumes in NOESY data sets (55, 100, 150 and 200 ms mixing times) on the 1S-(-)-trans-anti-(BPh)G*C and the 1R-(+)-trans-anti-(BPh)G*C 11-mer DNA duplex adducts in D2O buffer at 23 and 18 sC, respectively, and bounds were set between 15% and 25% of the calculated distances using the fixed cytidine H5-H6 reference distance of 2.45 . Non-stereospecific assignments were treated with r-6 averaging. Interproton distance restraints involving exchangeable protons of the same complex were obtained from NOESY spectra (90 and 150 ms mixing times) in H2O buffer at 4 sC with bounds set between 20% and 25% of the calculated distance using the thymine imino to adenine H2 reference distance of 2.91 across an A*T base pair.
torsion angle dynamics, simulated annealing, relaxation matrix refinements, energe minimization
1
fewest violations
1R-trans-anti-BPh (carcinogen) covalently bound to 11mer DNA duplex
aqueous solution
Varian Associates Inc.
processing
VNMR
6.1
MSI
data analysis
Felix
felix2000
Brunger, A. T.
refinement
X-PLOR
3.1
600
Varian
INOVA
500
Varian
INOVA
400
Varian
INOVA
BPH
1
3
BPJ
BPJ
25
A
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
7
DC
7
A
T
8
n
8
DT
8
A
A
9
n
9
DA
9
A
C
10
n
10
DC
10
A
C
11
n
11
DC
11
A
G
12
n
1
DG
12
B
G
13
n
2
DG
13
B
T
14
n
3
DT
14
B
A
15
n
4
DA
15
B
G
16
n
5
DG
16
B
C
17
n
6
DC
17
B
G
18
n
7
DG
18
B
A
19
n
8
DA
19
B
T
20
n
9
DT
20
B
G
21
n
10
DG
21
B
G
22
n
11
DG
22
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
3
A
A
N2
C13
DG
BPJ
6
25
2.18
5
A
A
N2
C13
DG
BPJ
6
25
2.15
6
A
A
N2
C13
DG
BPJ
6
25
2.19
8
A
A
N2
C13
DG
BPJ
6
25
2.18
9
A
A
N2
C13
DG
BPJ
6
25
2.19
1
3.96
0.60
118.90
122.86
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
1
-5.67
0.80
105.90
100.23
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
1
-5.80
0.60
122.90
117.10
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
1
-6.04
0.80
105.90
99.86
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
1
3.83
0.60
118.90
122.73
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
1
-7.34
1.00
110.10
102.76
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
1
4.64
0.30
108.30
112.94
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
4.38
0.60
106.00
110.38
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
1
9.88
1.40
114.30
124.18
A
A
A
N1
C1'
C2'
DC
DC
DC
7
7
7
N
1
4.03
0.30
108.30
112.33
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
5.88
0.60
119.00
124.88
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
1
-7.29
0.60
122.90
115.61
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
1
8.31
1.20
119.70
128.01
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
1
3.78
0.60
118.90
122.68
A
A
A
N1
C2
O2
DC
DC
DC
10
10
10
N
1
3.91
0.60
118.90
122.81
A
A
A
N1
C2
O2
DC
DC
DC
11
11
11
N
1
-5.36
0.80
105.90
100.54
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
1
3.41
0.30
108.30
111.71
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
-5.29
0.70
102.20
96.91
B
B
B
C4'
C3'
C2'
DG
DG
DG
13
13
13
N
1
8.11
1.20
119.70
127.81
B
B
B
C3'
O3'
P
DG
DG
DT
13
13
14
Y
1
-5.71
0.80
105.90
100.19
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
1
2.62
0.30
108.30
110.92
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
4.49
0.60
119.00
123.49
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
1
-6.78
0.60
122.90
116.12
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
1
8.91
1.20
119.70
128.61
B
B
B
C3'
O3'
P
DT
DT
DA
14
14
15
Y
1
-7.14
1.00
110.10
102.96
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
1
1.93
0.30
108.30
110.23
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
3.12
0.30
108.30
111.42
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
3.93
0.60
118.90
122.83
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
1
7.67
1.20
119.70
127.37
B
B
B
C3'
O3'
P
DC
DC
DG
17
17
18
Y
1
-6.54
0.80
105.90
99.36
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
1
-5.37
0.80
105.90
100.53
B
B
B
O4'
C1'
C2'
DT
DT
DT
20
20
20
N
1
4.01
0.60
119.00
123.01
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
1
-6.63
0.60
122.90
116.27
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
1
-5.47
0.80
105.90
100.43
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
2
3.76
0.60
118.90
122.66
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
2
7.53
1.20
119.70
127.23
A
A
A
C3'
O3'
P
DC
DC
DA
2
2
3
Y
2
-5.67
0.80
105.90
100.23
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
2
3.64
0.30
108.30
111.94
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
2
6.81
1.10
109.80
116.61
A
A
A
C5'
C4'
O4'
DT
DT
DT
4
4
4
N
2
-6.64
0.80
105.90
99.26
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
2
-6.24
0.60
122.90
116.66
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
2
-8.53
1.00
110.10
101.57
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
2
-4.83
0.80
105.90
101.07
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
2
6.52
0.30
108.30
114.82
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
2
4.38
0.60
106.00
110.38
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
2
9.74
1.40
114.30
124.04
A
A
A
N1
C1'
C2'
DC
DC
DC
7
7
7
N
2
4.30
0.30
108.30
112.60
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
2
6.15
0.60
119.00
125.15
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
2
-7.55
0.60
122.90
115.35
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
2
8.08
1.20
119.70
127.78
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
2
3.90
0.60
118.90
122.80
A
A
A
N1
C2
O2
DC
DC
DC
11
11
11
N
2
-5.69
0.80
105.90
100.21
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
2
8.64
0.30
108.30
116.94
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
9.03
1.20
119.70
128.73
B
B
B
C3'
O3'
P
DG
DG
DG
12
12
13
Y
2
-4.40
0.70
102.20
97.80
B
B
B
C4'
C3'
C2'
DT
DT
DT
14
14
14
N
2
-5.57
0.80
105.90
100.33
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
2
3.20
0.30
108.30
111.50
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
2
5.16
0.60
119.00
124.16
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
2
-7.56
0.60
122.90
115.34
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
2
9.20
1.20
119.70
128.90
B
B
B
C3'
O3'
P
DT
DT
DA
14
14
15
Y
2
-7.08
1.00
110.10
103.02
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
2
3.05
0.30
108.30
111.35
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
2
4.05
0.60
118.90
122.95
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
2
7.64
1.20
119.70
127.34
B
B
B
C3'
O3'
P
DC
DC
DG
17
17
18
Y
2
-6.30
0.80
105.90
99.60
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
2
3.85
0.60
119.00
122.85
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
2
-6.19
0.60
122.90
116.71
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
2
-6.42
1.00
110.10
103.68
B
B
B
C1'
O4'
C4'
DG
DG
DG
21
21
21
N
2
7.29
1.20
119.70
126.99
B
B
B
C3'
O3'
P
DG
DG
DG
21
21
22
Y
3
3.97
0.60
118.90
122.87
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
3
-4.88
0.80
105.90
101.02
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
3
-5.65
0.60
122.90
117.25
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
3
3.88
0.60
118.90
122.78
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
3
-8.12
1.00
110.10
101.98
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
3
5.27
0.60
106.00
111.27
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
3
7.86
1.20
102.50
110.36
A
A
A
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
3
5.76
0.30
108.30
114.06
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
3
4.26
0.60
118.90
123.16
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
3
-4.82
0.80
105.90
101.08
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
3
5.23
0.60
119.00
124.23
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
3
-6.99
0.60
122.90
115.91
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
3
8.89
1.20
119.70
128.59
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
3
3.97
0.60
118.90
122.87
A
A
A
N1
C2
O2
DC
DC
DC
10
10
10
N
3
-4.99
0.80
105.90
100.91
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
3
6.01
0.30
108.30
114.31
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
3
-6.14
0.80
105.90
99.76
B
B
B
O4'
C1'
C2'
DG
DG
DG
13
13
13
N
3
7.30
1.10
109.80
117.10
B
B
B
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
3
-4.61
0.70
102.20
97.59
B
B
B
C4'
C3'
C2'
DT
DT
DT
14
14
14
N
3
-8.88
0.80
105.90
97.02
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
3
3.98
0.30
108.30
112.28
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
3
4.71
0.60
119.00
123.71
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
3
-7.39
0.60
122.90
115.51
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
3
9.10
1.20
119.70
128.80
B
B
B
C3'
O3'
P
DT
DT
DA
14
14
15
Y
3
-4.51
0.70
108.00
103.49
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
3
-6.13
1.00
110.10
103.97
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
3
2.32
0.30
108.30
110.62
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
3
3.63
0.30
108.30
111.93
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
3
3.77
0.60
118.90
122.67
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
3
6.88
1.10
109.80
116.68
B
B
B
C5'
C4'
O4'
DG
DG
DG
18
18
18
N
3
-7.21
0.80
105.90
98.69
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
3
-5.54
0.80
105.90
100.36
B
B
B
O4'
C1'
C2'
DT
DT
DT
20
20
20
N
3
4.01
0.60
119.00
123.01
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
3
-6.42
0.60
122.90
116.48
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
3
-5.08
0.80
105.90
100.82
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
3
7.31
1.20
119.70
127.01
B
B
B
C3'
O3'
P
DG
DG
DG
21
21
22
Y
4
3.96
0.60
118.90
122.86
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
4
-5.20
0.80
105.90
100.70
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
4
-5.64
0.60
122.90
117.26
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
4
3.96
0.60
118.90
122.86
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
4
-7.54
1.00
110.10
102.56
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
4
4.54
0.30
108.30
112.84
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
4
5.71
0.60
106.00
111.71
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
4
8.26
1.20
102.50
110.76
A
A
A
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
4
10.69
1.40
114.30
124.99
A
A
A
N1
C1'
C2'
DC
DC
DC
7
7
7
N
4
5.26
0.30
108.30
113.56
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
4
4.08
0.60
118.90
122.98
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
4
-4.83
0.80
105.90
101.07
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
4
5.67
0.60
119.00
124.67
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
4
-7.49
0.60
122.90
115.41
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
4
8.39
1.20
119.70
128.09
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
4
3.82
0.60
118.90
122.72
A
A
A
N1
C2
O2
DC
DC
DC
10
10
10
N
4
-4.92
0.80
105.90
100.98
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
4
5.68
0.30
108.30
113.98
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
4
-6.19
0.80
105.90
99.71
B
B
B
O4'
C1'
C2'
DG
DG
DG
13
13
13
N
4
1.93
0.30
108.30
110.23
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
4
7.34
1.10
109.80
117.14
B
B
B
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
4
-4.74
0.70
102.20
97.46
B
B
B
C4'
C3'
C2'
DT
DT
DT
14
14
14
N
4
-8.64
0.80
105.90
97.26
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
4
3.73
0.30
108.30
112.03
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
4
4.86
0.60
119.00
123.86
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
4
-7.53
0.60
122.90
115.37
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
4
9.17
1.20
119.70
128.87
B
B
B
C3'
O3'
P
DT
DT
DA
14
14
15
Y
4
-6.67
1.00
110.10
103.43
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
4
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
4
3.79
0.60
118.90
122.69
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
4
8.18
1.20
119.70
127.88
B
B
B
C3'
O3'
P
DC
DC
DG
17
17
18
Y
4
-5.86
0.80
105.90
100.04
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
4
-5.48
0.80
105.90
100.42
B
B
B
O4'
C1'
C2'
DT
DT
DT
20
20
20
N
4
3.85
0.60
119.00
122.85
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
4
-6.57
0.60
122.90
116.33
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
4
1.82
0.30
108.30
110.12
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
4
8.55
1.20
119.70
128.25
B
B
B
C3'
O3'
P
DG
DG
DG
21
21
22
Y
5
3.87
0.60
118.90
122.77
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
5
-5.38
0.80
105.90
100.52
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
5
1.98
0.30
108.30
110.28
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
5
-5.61
0.60
122.90
117.29
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
5
8.23
1.10
109.80
118.03
A
A
A
C5'
C4'
O4'
DC
DC
DC
5
5
5
N
5
-6.86
0.80
105.90
99.04
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
5
4.36
0.60
118.90
123.26
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
5
-8.11
1.00
110.10
101.99
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
5
2.47
0.40
105.40
107.87
A
A
A
N9
C4
C5
DG
DG
DG
6
6
6
N
5
4.91
0.60
106.00
110.91
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
5
7.30
1.20
102.50
109.80
A
A
A
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
5
8.94
1.40
114.30
123.24
A
A
A
N1
C1'
C2'
DC
DC
DC
7
7
7
N
5
4.85
0.30
108.30
113.15
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
5
4.30
0.60
118.90
123.20
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
5
-4.83
0.80
105.90
101.07
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
5
5.66
0.60
119.00
124.66
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
5
-7.40
0.60
122.90
115.50
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
5
8.48
1.20
119.70
128.18
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
5
3.73
0.60
118.90
122.63
A
A
A
N1
C2
O2
DC
DC
DC
10
10
10
N
5
3.73
0.60
118.90
122.63
A
A
A
N1
C2
O2
DC
DC
DC
11
11
11
N
5
-5.02
0.70
102.20
97.18
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
5
2.21
0.30
108.30
110.51
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
5
-4.90
0.70
102.20
97.30
B
B
B
C4'
C3'
C2'
DG
DG
DG
13
13
13
N
5
7.05
1.10
109.80
116.85
B
B
B
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
5
-6.34
1.00
110.10
103.76
B
B
B
C1'
O4'
C4'
DT
DT
DT
14
14
14
N
5
-6.23
0.80
105.90
99.67
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
5
2.58
0.30
108.30
110.88
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
5
4.33
0.60
119.00
123.33
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
5
-7.07
0.60
122.90
115.83
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
5
-6.13
1.00
110.10
103.97
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
5
4.71
0.30
108.30
113.01
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
5
-6.38
1.00
110.10
103.72
B
B
B
C1'
O4'
C4'
DC
DC
DC
17
17
17
N
5
3.30
0.30
108.30
111.60
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
5
4.10
0.60
118.90
123.00
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
5
-6.62
0.80
105.90
99.28
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
5
-5.34
0.80
105.90
100.56
B
B
B
O4'
C1'
C2'
DT
DT
DT
20
20
20
N
5
4.10
0.60
119.00
123.10
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
5
-6.46
0.60
122.90
116.44
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
5
-6.18
1.00
110.10
103.92
B
B
B
C1'
O4'
C4'
DG
DG
DG
21
21
21
N
5
-4.87
0.80
105.90
101.03
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
5
7.27
1.20
119.70
126.97
B
B
B
C3'
O3'
P
DG
DG
DG
21
21
22
Y
6
-5.85
0.80
105.90
100.05
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
6
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
6
-6.10
0.60
122.90
116.80
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
6
4.01
0.60
118.90
122.91
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
6
-7.58
1.00
110.10
102.52
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
6
-5.53
0.70
102.20
96.67
A
A
A
C4'
C3'
C2'
DC
DC
DC
7
7
7
N
6
3.93
0.60
118.90
122.83
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
6
6.60
0.60
119.00
125.60
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
6
-8.21
0.60
122.90
114.69
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
6
8.22
1.20
119.70
127.92
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
6
3.68
0.60
118.90
122.58
A
A
A
N1
C2
O2
DC
DC
DC
10
10
10
N
6
-4.84
0.80
105.90
101.06
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
6
5.46
0.30
108.30
113.76
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
6
-5.85
0.80
105.90
100.05
B
B
B
O4'
C1'
C2'
DG
DG
DG
13
13
13
N
6
7.62
1.10
109.80
117.42
B
B
B
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
6
-5.01
0.70
102.20
97.19
B
B
B
C4'
C3'
C2'
DT
DT
DT
14
14
14
N
6
-9.19
0.80
105.90
96.71
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
6
3.32
0.30
108.30
111.62
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
6
5.16
0.60
119.00
124.16
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
6
-7.83
0.60
122.90
115.07
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
6
-6.44
0.80
105.90
99.46
B
B
B
O4'
C1'
C2'
DA
DA
DA
15
15
15
N
6
-6.53
1.00
110.10
103.57
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
6
2.00
0.30
108.30
110.30
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
6
4.12
0.30
108.30
112.42
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
6
3.73
0.60
118.90
122.63
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
6
7.89
1.20
119.70
127.59
B
B
B
C3'
O3'
P
DC
DC
DG
17
17
18
Y
6
-5.52
0.80
105.90
100.38
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
6
4.25
0.60
119.00
123.25
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
6
-6.42
0.60
122.90
116.48
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
7
3.83
0.60
118.90
122.73
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
7
-5.73
0.80
105.90
100.17
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
7
2.35
0.30
108.30
110.65
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
7
-5.94
0.60
122.90
116.96
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
7
-5.99
0.80
105.90
99.91
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
7
3.82
0.60
118.90
122.72
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
7
-7.55
1.00
110.10
102.55
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
7
5.87
0.30
108.30
114.17
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
7
4.63
0.60
106.00
110.63
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
7
10.82
1.40
114.30
125.12
A
A
A
N1
C1'
C2'
DC
DC
DC
7
7
7
N
7
3.57
0.30
108.30
111.87
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
7
-4.97
0.80
105.90
100.93
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
7
6.26
0.60
119.00
125.26
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
7
-7.58
0.60
122.90
115.32
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
7
7.99
1.20
119.70
127.69
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
7
3.88
0.60
118.90
122.78
A
A
A
N1
C2
O2
DC
DC
DC
11
11
11
N
7
-5.36
0.80
105.90
100.54
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
7
5.74
0.30
108.30
114.04
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
7
8.08
1.20
119.70
127.78
B
B
B
C3'
O3'
P
DG
DG
DT
13
13
14
Y
7
3.62
0.60
106.00
109.62
B
B
B
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
7
-6.08
1.00
110.10
104.02
B
B
B
C1'
O4'
C4'
DT
DT
DT
14
14
14
N
7
4.65
0.60
119.00
123.65
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
7
-7.05
0.60
122.90
115.85
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
7
-7.25
1.00
110.10
102.85
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
7
3.48
0.30
108.30
111.78
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
7
3.96
0.60
118.90
122.86
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
7
7.39
1.20
119.70
127.09
B
B
B
C3'
O3'
P
DC
DC
DG
17
17
18
Y
7
-6.44
0.80
105.90
99.46
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
7
-5.39
0.80
105.90
100.51
B
B
B
O4'
C1'
C2'
DT
DT
DT
20
20
20
N
7
4.15
0.60
119.00
123.15
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
7
-6.79
0.60
122.90
116.11
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
7
-5.42
0.80
105.90
100.48
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
8
3.83
0.60
118.90
122.73
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
8
-5.07
0.80
105.90
100.83
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
8
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
8
-6.04
0.60
122.90
116.86
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
8
-6.39
0.80
105.90
99.51
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
8
3.84
0.60
118.90
122.74
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
8
-7.37
1.00
110.10
102.73
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
8
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
8
-4.85
0.70
102.20
97.35
A
A
A
C4'
C3'
C2'
DC
DC
DC
7
7
7
N
8
4.08
0.60
118.90
122.98
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
8
-6.84
1.00
110.10
103.26
A
A
A
C1'
O4'
C4'
DT
DT
DT
8
8
8
N
8
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
8
-5.10
0.60
122.90
117.80
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
8
8.60
1.20
119.70
128.30
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
8
3.63
0.60
118.90
122.53
A
A
A
N1
C2
O2
DC
DC
DC
11
11
11
N
8
-4.31
0.70
102.20
97.89
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
8
-5.75
0.80
105.90
100.15
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
8
6.70
0.30
108.30
115.00
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
8
8.66
1.20
119.70
128.36
B
B
B
C3'
O3'
P
DG
DG
DG
12
12
13
Y
8
6.69
1.10
109.80
116.49
B
B
B
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
8
-6.43
1.00
110.10
103.67
B
B
B
C1'
O4'
C4'
DT
DT
DT
14
14
14
N
8
-6.25
0.80
105.90
99.65
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
8
2.58
0.30
108.30
110.88
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
8
4.49
0.60
119.00
123.49
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
8
-7.36
0.60
122.90
115.54
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
8
-6.63
1.00
110.10
103.47
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
8
2.47
0.30
108.30
110.77
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
8
4.00
0.30
108.30
112.30
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
8
3.74
0.60
118.90
122.64
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
8
7.82
1.20
119.70
127.52
B
B
B
C3'
O3'
P
DC
DC
DG
17
17
18
Y
8
-6.52
0.80
105.90
99.38
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
8
-5.12
0.80
105.90
100.78
B
B
B
O4'
C1'
C2'
DT
DT
DT
20
20
20
N
8
3.70
0.60
119.00
122.70
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
8
-6.33
0.60
122.90
116.57
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
8
-5.31
0.80
105.90
100.59
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
9
4.04
0.60
118.90
122.94
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
9
-5.58
0.80
105.90
100.32
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
9
-5.89
0.60
122.90
117.01
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
9
-6.51
0.80
105.90
99.39
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
9
4.11
0.60
118.90
123.01
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
9
-6.88
1.00
110.10
103.22
A
A
A
C1'
O4'
C4'
DG
DG
DG
6
6
6
N
9
-6.01
0.70
102.20
96.19
A
A
A
C4'
C3'
C2'
DC
DC
DC
7
7
7
N
9
4.02
0.60
118.90
122.92
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
9
6.53
0.60
119.00
125.53
A
A
A
C4
C5
C7
DT
DT
DT
8
8
8
N
9
-8.00
0.60
122.90
114.90
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
9
8.27
1.20
119.70
127.97
A
A
A
C3'
O3'
P
DT
DT
DA
8
8
9
Y
9
3.67
0.60
118.90
122.57
A
A
A
N1
C2
O2
DC
DC
DC
10
10
10
N
9
3.64
0.60
118.90
122.54
A
A
A
N1
C2
O2
DC
DC
DC
11
11
11
N
9
-4.25
0.70
102.20
97.95
B
B
B
C4'
C3'
C2'
DG
DG
DG
12
12
12
N
9
-5.92
0.80
105.90
99.98
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
9
6.74
0.30
108.30
115.04
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
9
8.94
1.20
119.70
128.64
B
B
B
C3'
O3'
P
DG
DG
DG
12
12
13
Y
9
7.68
1.10
109.80
117.48
B
B
B
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
9
-4.39
0.70
102.20
97.81
B
B
B
C4'
C3'
C2'
DT
DT
DT
14
14
14
N
9
-8.84
0.80
105.90
97.06
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
9
4.14
0.30
108.30
112.44
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
9
5.10
0.60
119.00
124.10
B
B
B
C4
C5
C7
DT
DT
DT
14
14
14
N
9
-7.66
0.60
122.90
115.24
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
9
8.94
1.20
119.70
128.64
B
B
B
C3'
O3'
P
DT
DT
DA
14
14
15
Y
9
-4.93
0.70
108.00
103.07
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
9
-6.09
1.00
110.10
104.01
B
B
B
C1'
O4'
C4'
DG
DG
DG
16
16
16
N
9
2.34
0.30
108.30
110.64
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
9
3.96
0.30
108.30
112.26
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
9
3.69
0.60
118.90
122.59
B
B
B
N1
C2
O2
DC
DC
DC
17
17
17
N
9
7.95
1.20
119.70
127.65
B
B
B
C3'
O3'
P
DC
DC
DG
17
17
18
Y
9
-6.20
0.80
105.90
99.70
B
B
B
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
9
-5.85
0.80
105.90
100.05
B
B
B
O4'
C1'
C2'
DT
DT
DT
20
20
20
N
9
3.97
0.60
119.00
122.97
B
B
B
C4
C5
C7
DT
DT
DT
20
20
20
N
9
-6.66
0.60
122.90
116.24
B
B
B
C6
C5
C7
DT
DT
DT
20
20
20
N
9
-5.28
0.80
105.90
100.62
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
1
A
A
N1
C6
DC
DC
2
2
-0.038
0.006
1.367
1.329
N
1
A
A
N7
C8
DG
DG
6
6
0.045
0.006
1.305
1.350
N
1
A
A
C3'
C2'
DA
DA
9
9
-0.059
0.008
1.516
1.457
N
1
B
B
N7
C8
DG
DG
12
12
0.041
0.006
1.305
1.346
N
1
B
B
N7
C8
DG
DG
13
13
0.050
0.006
1.305
1.355
N
1
B
B
N7
C8
DA
DA
15
15
0.043
0.007
1.311
1.354
N
1
B
B
N7
C8
DG
DG
16
16
0.045
0.006
1.305
1.350
N
1
B
B
N7
C8
DG
DG
18
18
0.040
0.006
1.305
1.345
N
1
B
B
N7
C8
DG
DG
21
21
0.045
0.006
1.305
1.350
N
1
B
B
N7
C8
DG
DG
22
22
0.045
0.006
1.305
1.350
N
2
A
A
N1
C6
DC
DC
2
2
-0.037
0.006
1.367
1.330
N
2
A
A
N7
C8
DG
DG
6
6
0.046
0.006
1.305
1.351
N
2
A
A
C6
N1
DT
DT
8
8
-0.043
0.007
1.378
1.335
N
2
A
A
C3'
C2'
DA
DA
9
9
-0.057
0.008
1.516
1.459
N
2
B
B
N7
C8
DG
DG
12
12
0.046
0.006
1.305
1.351
N
2
B
B
C3'
C2'
DG
DG
13
13
-0.049
0.008
1.516
1.467
N
2
B
B
N7
C8
DG
DG
13
13
0.046
0.006
1.305
1.351
N
2
B
B
C6
N1
DT
DT
14
14
-0.043
0.007
1.378
1.335
N
2
B
B
N7
C8
DG
DG
16
16
0.043
0.006
1.305
1.348
N
2
B
B
N7
C8
DG
DG
18
18
0.043
0.006
1.305
1.348
N
2
B
B
N7
C8
DG
DG
21
21
0.048
0.006
1.305
1.353
N
2
B
B
N7
C8
DG
DG
22
22
0.046
0.006
1.305
1.351
N
3
A
A
N1
C6
DC
DC
2
2
-0.038
0.006
1.367
1.329
N
3
A
A
N7
C8
DG
DG
6
6
0.047
0.006
1.305
1.352
N
3
A
A
C6
N1
DT
DT
8
8
-0.042
0.007
1.378
1.336
N
3
A
A
C3'
C2'
DA
DA
9
9
-0.059
0.008
1.516
1.457
N
3
B
B
N7
C8
DG
DG
12
12
0.047
0.006
1.305
1.352
N
3
B
B
N7
C8
DG
DG
13
13
0.049
0.006
1.305
1.354
N
3
B
B
C6
N1
DT
DT
14
14
-0.043
0.007
1.378
1.335
N
3
B
B
N7
C8
DG
DG
16
16
0.042
0.006
1.305
1.347
N
3
B
B
N7
C8
DG
DG
18
18
0.042
0.006
1.305
1.347
N
3
B
B
N7
C8
DG
DG
21
21
0.048
0.006
1.305
1.353
N
3
B
B
N7
C8
DG
DG
22
22
0.042
0.006
1.305
1.347
N
4
A
A
N1
C6
DC
DC
2
2
-0.039
0.006
1.367
1.328
N
4
A
A
N7
C8
DG
DG
6
6
0.048
0.006
1.305
1.353
N
4
A
A
C3'
C2'
DA
DA
9
9
-0.057
0.008
1.516
1.459
N
4
B
B
N7
C8
DG
DG
12
12
0.048
0.006
1.305
1.353
N
4
B
B
N7
C8
DG
DG
13
13
0.051
0.006
1.305
1.356
N
4
B
B
C6
N1
DT
DT
14
14
-0.043
0.007
1.378
1.335
N
4
B
B
N7
C8
DG
DG
16
16
0.042
0.006
1.305
1.347
N
4
B
B
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
4
B
B
N7
C8
DG
DG
21
21
0.046
0.006
1.305
1.351
N
4
B
B
N7
C8
DG
DG
22
22
0.045
0.006
1.305
1.350
N
5
A
A
N1
C6
DC
DC
2
2
-0.038
0.006
1.367
1.329
N
5
A
A
N7
C8
DG
DG
6
6
0.047
0.006
1.305
1.352
N
5
A
A
C3'
C2'
DA
DA
9
9
-0.059
0.008
1.516
1.457
N
5
B
B
N7
C8
DG
DG
12
12
0.044
0.006
1.305
1.349
N
5
B
B
C3'
C2'
DG
DG
13
13
-0.064
0.008
1.516
1.452
N
5
B
B
N7
C8
DG
DG
13
13
0.049
0.006
1.305
1.354
N
5
B
B
N7
C8
DG
DG
16
16
0.041
0.006
1.305
1.346
N
5
B
B
N7
C8
DG
DG
18
18
0.042
0.006
1.305
1.347
N
5
B
B
N7
C8
DG
DG
21
21
0.045
0.006
1.305
1.350
N
5
B
B
N7
C8
DG
DG
22
22
0.045
0.006
1.305
1.350
N
6
A
A
N7
C8
DG
DG
6
6
0.048
0.006
1.305
1.353
N
6
A
A
C5
C7
DT
DT
8
8
0.037
0.006
1.496
1.533
N
6
A
A
C3'
C2'
DA
DA
9
9
-0.056
0.008
1.516
1.460
N
6
B
B
N7
C8
DG
DG
12
12
0.046
0.006
1.305
1.351
N
6
B
B
N7
C8
DG
DG
13
13
0.049
0.006
1.305
1.354
N
6
B
B
C6
N1
DT
DT
14
14
-0.045
0.007
1.378
1.333
N
6
B
B
N7
C8
DA
DA
15
15
0.042
0.007
1.311
1.353
N
6
B
B
N7
C8
DG
DG
18
18
0.043
0.006
1.305
1.348
N
6
B
B
N7
C8
DG
DG
21
21
0.045
0.006
1.305
1.350
N
6
B
B
N7
C8
DG
DG
22
22
0.046
0.006
1.305
1.351
N
7
A
A
N1
C6
DC
DC
2
2
-0.038
0.006
1.367
1.329
N
7
A
A
N7
C8
DG
DG
6
6
0.046
0.006
1.305
1.351
N
7
A
A
C3'
C2'
DA
DA
9
9
-0.059
0.008
1.516
1.457
N
7
B
B
N7
C8
DG
DG
12
12
0.042
0.006
1.305
1.347
N
7
B
B
C3'
C2'
DG
DG
13
13
-0.050
0.008
1.516
1.466
N
7
B
B
N7
C8
DG
DG
13
13
0.049
0.006
1.305
1.354
N
7
B
B
N7
C8
DA
DA
15
15
0.044
0.007
1.311
1.355
N
7
B
B
N7
C8
DG
DG
16
16
0.043
0.006
1.305
1.348
N
7
B
B
N7
C8
DG
DG
18
18
0.040
0.006
1.305
1.345
N
7
B
B
N7
C8
DG
DG
21
21
0.045
0.006
1.305
1.350
N
7
B
B
N7
C8
DG
DG
22
22
0.044
0.006
1.305
1.349
N
8
A
A
N1
C6
DC
DC
2
2
-0.039
0.006
1.367
1.328
N
8
A
A
N7
C8
DG
DG
6
6
0.046
0.006
1.305
1.351
N
8
A
A
C3'
C2'
DA
DA
9
9
-0.057
0.008
1.516
1.459
N
8
B
B
N7
C8
DG
DG
12
12
0.045
0.006
1.305
1.350
N
8
B
B
C3'
C2'
DG
DG
13
13
-0.056
0.008
1.516
1.460
N
8
B
B
N7
C8
DG
DG
13
13
0.046
0.006
1.305
1.351
N
8
B
B
N7
C8
DA
DA
15
15
0.043
0.007
1.311
1.354
N
8
B
B
N7
C8
DG
DG
16
16
0.041
0.006
1.305
1.346
N
8
B
B
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
8
B
B
N7
C8
DG
DG
21
21
0.047
0.006
1.305
1.352
N
8
B
B
N7
C8
DG
DG
22
22
0.042
0.006
1.305
1.347
N
9
A
A
N1
C6
DC
DC
2
2
-0.037
0.006
1.367
1.330
N
9
A
A
N7
C8
DG
DG
6
6
0.048
0.006
1.305
1.353
N
9
A
A
C3'
C2'
DA
DA
9
9
-0.058
0.008
1.516
1.458
N
9
B
B
N7
C8
DG
DG
12
12
0.045
0.006
1.305
1.350
N
9
B
B
C3'
C2'
DG
DG
13
13
-0.059
0.008
1.516
1.457
N
9
B
B
N7
C8
DG
DG
13
13
0.046
0.006
1.305
1.351
N
9
B
B
N7
C8
DG
DG
16
16
0.040
0.006
1.305
1.345
N
9
B
B
N7
C8
DG
DG
18
18
0.039
0.006
1.305
1.344
N
9
B
B
N7
C8
DG
DG
21
21
0.045
0.006
1.305
1.350
N
9
B
B
N7
C8
DG
DG
22
22
0.044
0.006
1.305
1.349
N
MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY
1
N
N
2
N
N
3
N
N
covale
1.343
none
A
DG
6
A
N2
DG
6
1_555
A
BPJ
25
C
C1
BPJ
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
22
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
22
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
22
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
21
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
21
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
21
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
20
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
20
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
19
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
19
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
18
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
18
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
18
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
17
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
17
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
17
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
16
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
16
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
16
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
15
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
15
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N1
DA
9
1_555
B
DT
14
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N6
DA
9
1_555
B
DT
14
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
13
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
13
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
13
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
12
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
12
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
12
B
N2
DG
1
1_555
DNA
1R-trans-anti-BPh-N2-G adduct, carcinogen-dna adduct, benzo[c]phenanthrene dna adduct, DNA
1HX4
PDB
1
1HX4
1HX4
PDB
2
1HX4
1
11
1HX4
1
11
1HX4
A
1
1
11
12
22
1HX4
12
22
1HX4
B
2
1
11
BINDING SITE FOR RESIDUE BPJ A 25
A
BPJ
25
Software
6
A
DG
6
A
DG
6
6
1_555
A
DC
7
A
DC
7
6
1_555
B
DG
16
B
DG
5
6
1_555
B
DC
17
B
DC
6
6
1_555
B
DG
18
B
DG
7
6
1_555
B
DA
19
B
DA
8
6
1_555
1
P 1