0.015795 0.009119 0.000000 0.000000 0.018239 0.000000 0.000000 0.000000 0.011983 0.00000 0.00000 0.00000 Graves, B.J. Hatada, M.H. Crowther, R.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 63.310 63.310 83.450 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C38 H50 N6 O5 670.841 (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide Fortovase; SAQUINAVIR; RO 31-8959 peptide-like C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N C N 291 N O Y 292 N N Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N C N 308 N O N 309 N N N 310 R C N 311 N O N 312 S C N 313 N N N 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N N N 322 N C N 323 S C N 324 N C N 325 N O N 326 N C N 327 S C N 328 N C N 329 N C N 330 N C N 331 N C N 332 S C N 333 N C N 334 N N N 335 N C N 336 N C N 337 N C N 338 N C N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C N 394 N O N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 R C N 408 N O N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N N Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 N C Y 452 N C Y 453 N C Y 454 N C Y 455 N C Y 456 N C Y 457 N C N 458 N O N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 N C N 476 N C N 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing Y 279 N doub Y 280 N sing Y 281 N sing Y 282 N doub N 283 N sing Y 284 N sing N 285 N sing Y 286 N doub Y 287 N sing Y 288 N sing N 289 N sing Y 290 N doub N 291 N sing Y 292 N sing N 293 N sing Y 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing Y 320 N doub Y 321 N sing Y 322 N sing N 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N sing Y 429 N doub N 430 N sing Y 431 N doub N 432 N sing Y 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing Y 448 N doub Y 449 N sing Y 450 N sing N 451 N sing Y 452 N doub N 453 N sing Y 454 N doub N 455 N sing Y 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N doub N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 34 3340 3342 10.1021/jm00115a028 1956054 Novel binding mode of highly potent HIV-proteinase inhibitors incorporating the (R)-hydroxyethylamine isostere. 1991 US Science SCIEAS 0038 0036-8075 248 358 2183354 Rational Design of Peptide-Based HIV Proteinase Inhibitors 1990 10.2210/pdb1hxb/pdb pdb_00001hxb 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 AREA DETECTOR 1990-09-15 ADSC GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 10789.729 HIV-1 PROTEASE 3.4.23.16 2 man polymer 670.841 (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide 1 syn non-polymer 18.015 water 102 nat water no no PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample POL 11679 Human immunodeficiency virus type 1 (CLONE 12) HXB-3 POL 562 Escherichia coli PPTDELTAN 1 2.17 43.4 THE DATA REDUNDANCY IS 4.6 FOR DATA TO 2.01 ANGSTROMS RESOLUTION. R MERGE IS 0.035 FOR DATA TO 2.01 ANGSTROMS RESOLUTION. THE NUMBER OF UNIQUE REFLECTIONS IS 11337 TO 2.01 ANGSTROMS RESOLUTION. chem_comp chem_comp_atom chem_comp_bond database_2 entity pdbx_entity_nonpoly struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Data collection Database references Derived calculations Structure summary 1 0 1997-03-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2013-02-27 1 4 2024-02-07 _chem_comp.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1996-09-13 REL REL ROC (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide HOH water THE INHIBITOR ROC IS A HYDROXYETHYLAMINE CONTAINING TRANSITION STATE MIMETIC. SEE REFERENCE R.A.KRAMER,M.D.SCHABER, A.M.SKALKA,K.GANGULY, F.WONG-STAAL,E.P.REDDY (1986) SCIENCE 231, 1580-1584. DETAILS OF THE CLONING AND EXPRESSION ARE PUBLISHED [M.C. GRAVES, J.J. LIM, E.P. HEIMER & R.A. KRAMER (1988) PROC. NATL. ACAD. SCI., USA 85, 2449-2453]. PROTEIN WAS REFOLDED FROM THE INSOLUBLE FRACTION OF THE CELL LYSATE. THERE APPEARS TO BE NO SEQUENCE DATABASE REFERENCE TO THE HXB-3 VARIANT OF THE PROTEINASE SO A CROSS-REFERENCE IS GIVEN FOR THE HXB-2 VARIANT (IDENTICAL IN THE CODING REGION FOR THE PROTEINASE) Inhibitor Saquinavir Peptide-like QNC 1 2 ROC ROC 100 A HOH 3 3 HOH HOH 102 A HOH 12 3 HOH HOH 103 A HOH 13 3 HOH HOH 104 A HOH 14 3 HOH HOH 105 A HOH 15 3 HOH HOH 106 A HOH 16 3 HOH HOH 107 A HOH 20 3 HOH HOH 108 A HOH 22 3 HOH HOH 109 A HOH 23 3 HOH HOH 110 A HOH 26 3 HOH HOH 111 A HOH 27 3 HOH HOH 112 A HOH 31 3 HOH HOH 113 A HOH 36 3 HOH HOH 114 A HOH 39 3 HOH HOH 115 A HOH 41 3 HOH HOH 116 A HOH 42 3 HOH HOH 117 A HOH 43 3 HOH HOH 118 A HOH 44 3 HOH HOH 119 A HOH 45 3 HOH HOH 120 A HOH 46 3 HOH HOH 121 A HOH 47 3 HOH HOH 122 A HOH 49 3 HOH HOH 123 A HOH 50 3 HOH HOH 124 A HOH 52 3 HOH HOH 125 A HOH 56 3 HOH HOH 126 A HOH 58 3 HOH HOH 127 A HOH 60 3 HOH HOH 128 A HOH 63 3 HOH HOH 129 A HOH 64 3 HOH HOH 130 A HOH 65 3 HOH HOH 131 A HOH 68 3 HOH HOH 132 A HOH 70 3 HOH HOH 133 A HOH 72 3 HOH HOH 134 A HOH 74 3 HOH HOH 135 A HOH 75 3 HOH HOH 136 A HOH 76 3 HOH HOH 137 A HOH 77 3 HOH HOH 138 A HOH 79 3 HOH HOH 139 A HOH 82 3 HOH HOH 140 A HOH 84 3 HOH HOH 141 A HOH 85 3 HOH HOH 142 A HOH 88 3 HOH HOH 143 A HOH 90 3 HOH HOH 144 A HOH 92 3 HOH HOH 145 A HOH 93 3 HOH HOH 146 A HOH 94 3 HOH HOH 147 A HOH 96 3 HOH HOH 148 A HOH 97 3 HOH HOH 149 A HOH 98 3 HOH HOH 150 A HOH 101 3 HOH HOH 151 A HOH 103 3 HOH HOH 152 A HOH 104 3 HOH HOH 153 A HOH 106 3 HOH HOH 154 A HOH 108 3 HOH HOH 155 A HOH 110 3 HOH HOH 156 A HOH 112 3 HOH HOH 157 A HOH 113 3 HOH HOH 158 A HOH 114 3 HOH HOH 159 A HOH 1 3 HOH HOH 160 A HOH 73 3 HOH HOH 161 A HOH 2 3 HOH HOH 104 B HOH 4 3 HOH HOH 105 B HOH 5 3 HOH HOH 106 B HOH 6 3 HOH HOH 107 B HOH 7 3 HOH HOH 108 B HOH 8 3 HOH HOH 109 B HOH 10 3 HOH HOH 110 B HOH 11 3 HOH HOH 111 B HOH 17 3 HOH HOH 112 B HOH 18 3 HOH HOH 113 B HOH 19 3 HOH HOH 114 B HOH 21 3 HOH HOH 115 B HOH 24 3 HOH HOH 116 B HOH 28 3 HOH HOH 117 B HOH 29 3 HOH HOH 118 B HOH 32 3 HOH HOH 119 B HOH 33 3 HOH HOH 120 B HOH 34 3 HOH HOH 121 B HOH 37 3 HOH HOH 122 B HOH 38 3 HOH HOH 123 B HOH 40 3 HOH HOH 124 B HOH 48 3 HOH HOH 125 B HOH 51 3 HOH HOH 126 B HOH 53 3 HOH HOH 127 B HOH 55 3 HOH HOH 128 B HOH 57 3 HOH HOH 129 B HOH 59 3 HOH HOH 130 B HOH 61 3 HOH HOH 131 B HOH 62 3 HOH HOH 132 B HOH 66 3 HOH HOH 133 B HOH 67 3 HOH HOH 134 B HOH 69 3 HOH HOH 135 B HOH 71 3 HOH HOH 136 B HOH 78 3 HOH HOH 138 B HOH 80 3 HOH HOH 139 B HOH 81 3 HOH HOH 140 B HOH 83 3 HOH HOH 141 B HOH 86 3 HOH HOH 142 B HOH 105 3 HOH HOH 143 B HOH 107 3 HOH HOH 144 B HOH 109 3 HOH HOH 145 B HOH 111 3 HOH HOH 146 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A VAL 3 n 3 VAL 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B VAL 3 n 3 VAL 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B GLN 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B LEU 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 5410 -11 9090 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLN 18 A O GLN 18 A N ILE 15 A N ILE 15 A O LYS 14 A O LYS 14 A N GLU 65 A N GLU 65 A O ILE 62 A O ILE 62 A N GLY 73 A N GLY 73 A O LEU 33 A O LEU 33 A N LEU 76 A N LEU 76 A O VAL 75 A O VAL 75 A N TYR 59 A N TYR 59 A O GLY 52 A O GLY 52 A N GLY 49 A N GLY 49 A O THR 96 A O THR 96 B N ASN 98 B N ASN 98 B O GLN 18 B O GLN 18 B N ILE 15 B N ILE 15 B O LYS 14 B O LYS 14 B N GLU 65 B N GLU 65 B O ILE 62 B O ILE 62 B N GLY 73 B N GLY 73 B O LEU 33 B O LEU 33 B N LEU 76 B N LEU 76 B O VAL 75 B O VAL 75 B N TYR 59 B N TYR 59 B O GLY 52 B O GLY 52 B N GLY 49 B N GLY 49 1 5.98 0.80 106.30 112.28 A A A CD1 CG CD2 TRP TRP TRP 6 6 6 N 1 -5.51 0.80 107.30 101.79 A A A CE2 CD2 CG TRP TRP TRP 6 6 6 N 1 3.08 0.50 120.30 123.38 A A A NE CZ NH1 ARG ARG ARG 41 41 41 N 1 7.67 0.80 106.30 113.97 A A A CD1 CG CD2 TRP TRP TRP 42 42 42 N 1 -6.20 0.80 107.30 101.10 A A A CE2 CD2 CG TRP TRP TRP 42 42 42 N 1 -10.70 1.60 110.90 100.20 A A A CG1 CB CG2 VAL VAL VAL 82 82 82 N 1 5.73 0.80 106.30 112.03 B B B CD1 CG CD2 TRP TRP TRP 6 6 6 N 1 -5.78 0.80 107.30 101.52 B B B CE2 CD2 CG TRP TRP TRP 6 6 6 N 1 3.13 0.50 120.30 123.43 B B B NE CZ NH1 ARG ARG ARG 8 8 8 N 1 -13.75 2.20 117.20 103.45 B B B CA C N GLY GLY ARG 40 40 41 Y 1 6.26 0.80 106.30 112.56 B B B CD1 CG CD2 TRP TRP TRP 42 42 42 N 1 -5.83 0.80 107.30 101.47 B B B CE2 CD2 CG TRP TRP TRP 42 42 42 N 1 A A NE2 CD2 HIS HIS 69 69 -0.068 0.011 1.373 1.305 N 1 A GLN 61 48.67 27.46 20.8 THE STEREOCHEMICAL PARAMETERS USED WERE THOSE DISTRIBUTED WITH VERSION 2.1 OF X-PLOR. THE ASYMMETRIC UNIT CONSISTS OF THE PROTEIN DIMER AND ONE INHIBITOR MOLECULE. THE INHIBITOR HAS BEEN PLACED IN TWO ORIENTATIONS WITH OCCUPANCIES OF 0.56 AND 0.44 WHICH WERE CHOSEN TO MAKE THE TWO SETS OF TEMPERATURE FACTORS MORE EQUIVALENT. RESTRAINTS FROM NON-CRYSTALLOGRAPHIC SYMMETRY WERE NOT USED IN REFINEMENT. 0.184 0.184 2.30 10.0 8349 99.7 1 0.0 0.2 2.30 10.0 102 1665 49 0 1514 0.013 2.94 1.5 2.0 2.0 2.5 0.3 2.4 99.5 1HXB 0.0 1 91.6 model building X-PLOR 2.1 refinement X-PLOR 2.1 data collection ADSC phasing X-PLOR 2.1 HIV-1 proteinase complexed with RO 31-8959 1 N N 1 N N 2 N N 3 N N 3 N N A ARG 87 A ARG 87 HELX_P A LEU 90 A LEU 90 1 1 4 B ARG 87 B ARG 87 HELX_P B LEU 90 B LEU 90 1 2 4 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE-HYDROLASE INHIBITOR COMPLEX, ASPARTYL PROTEASE POL_HV1H2 UNP 1 1 P04585 FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSPSEAGADRQGTVSFNFPQVTLWQRPLVTIKIGGQLKEALL DTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPI ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT KILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV LPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDL IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEY WQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLA LQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGI DKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIE AEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQV RDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKG EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED 57 155 1HXB 1 99 P04585 A 1 1 99 57 155 1HXB 1 99 P04585 B 1 1 99 4 4 2 4 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLN 18 A GLN 18 A LEU 23 A LEU 23 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A ILE 62 A ILE 62 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A GLY 73 A GLY 73 A VAL 32 A VAL 32 A GLU 34 A GLU 34 A VAL 75 A VAL 75 A GLY 78 A GLY 78 A GLY 52 A GLY 52 A TYR 59 A TYR 59 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A THR 96 A THR 96 A ASN 98 A ASN 98 B THR 96 B THR 96 B ASN 98 B ASN 98 B GLN 18 B GLN 18 B LEU 23 B LEU 23 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B ILE 62 B ILE 62 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B GLY 73 B GLY 73 B VAL 32 B VAL 32 B GLU 34 B GLU 34 B VAL 75 B VAL 75 B GLY 78 B GLY 78 B GLY 52 B GLY 52 B TYR 59 B TYR 59 B TRP 42 B TRP 42 B GLY 49 B GLY 49 BINDING SITE FOR RESIDUE ROC A 100 A ROC 100 Software 29 A ARG 8 A ARG 8 29 1_555 A ASP 25 A ASP 25 29 1_555 A GLY 27 A GLY 27 29 1_555 A ALA 28 A ALA 28 29 1_555 A ASP 29 A ASP 29 29 1_555 A ASP 30 A ASP 30 29 1_555 A ILE 47 A ILE 47 29 1_555 A GLY 48 A GLY 48 29 1_555 A GLY 49 A GLY 49 29 1_555 A ILE 50 A ILE 50 29 1_555 A THR 80 A THR 80 29 1_555 A PRO 81 A PRO 81 29 1_555 A VAL 82 A VAL 82 29 1_555 A ILE 84 A ILE 84 29 1_555 A HOH 160 D HOH 29 1_555 A HOH 161 D HOH 29 1_555 B ARG 8 B ARG 8 29 1_555 B ASP 25 B ASP 25 29 1_555 B GLY 27 B GLY 27 29 1_555 B ALA 28 B ALA 28 29 1_555 B ASP 29 B ASP 29 29 1_555 B ASP 30 B ASP 30 29 1_555 B ILE 47 B ILE 47 29 1_555 B GLY 48 B GLY 48 29 1_555 B GLY 49 B GLY 49 29 1_555 B ILE 50 B ILE 50 29 1_555 B PRO 81 B PRO 81 29 1_555 B VAL 82 B VAL 82 29 1_555 B ILE 84 B ILE 84 29 1_555 169 P 61