0.015951
0.000000
0.006791
0.000000
0.013893
0.000000
0.000000
0.000000
0.017338
0.00000
0.00000
0.00000
Evdokimov, A.G.
Tropea, J.E.
Routzahn, K.M.
Waugh, D.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
113.06
90.00
62.692
71.978
62.684
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
11
401
408
10.1110/ps.34102
11790850
Crystal structure of the Yersinia pestis GTPase activator YopE.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
osmic mirrors
IMAGE PLATE
2000-10-05
MAR scanner 345 mm plate
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
1.5418
ROTATING ANODE
RIGAKU
14764.720
YERSINIA PESTIS VIRULENCE PROTEIN YOPE
C-TERMINAL DOMAIN (RESIDUES 90-219); BACTERIAL GTPASE ACTIVATING PROTEIN (GAP DOMAIN)
2
man
polymer
18.015
water
67
nat
water
YOPE, YERSINIA OUTER PROTEIN E
no
yes
APTPAQ(MSE)PSPTSFSDSIKQLAAETLPKY(MSE)QQLNSLDAE(MSE)LQKNHDQFATGSGPLRGSITQCQGL
(MSE)QFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQ(MSE)QKLLSL(MSE)HH
HHHH
APTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAIL
NTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLMHHHHHH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Yersinia
Escherichia
sample
YOPE
632
Yersinia pestis
562
Escherichia coli
BL21(RIL)DE3
PLASMID
1
2.52
50.84
VAPOR DIFFUSION, HANGING DROP
9
Ammonium sulphate, bicine, potassium nitrate, pH 9, VAPOR DIFFUSION, HANGING DROP, temperature 300K
300
repository
Initial release
Version format compliance
Version format compliance
1
0
2002-02-06
1
1
2008-04-27
1
2
2011-07-13
1HE9 IS Analogous protein from Pseudomonas aeruginosa
1HE1 IS Analogous protein from Pseudomonas aeruginosa
1G4U IS Analogous protein from Salmonella
1G4W IS Analogous protein from Salmonella
RCSB
Y
RCSB
2001-01-18
REL
REL
HOH
water
HOH
3004
2
HOH
HOH
3004
A
HOH
3007
2
HOH
HOH
3007
A
HOH
3008
2
HOH
HOH
3008
A
HOH
3010
2
HOH
HOH
3010
A
HOH
3011
2
HOH
HOH
3011
A
HOH
3015
2
HOH
HOH
3015
A
HOH
3016
2
HOH
HOH
3016
A
HOH
3017
2
HOH
HOH
3017
A
HOH
3020
2
HOH
HOH
3020
A
HOH
3021
2
HOH
HOH
3021
A
HOH
3023
2
HOH
HOH
3023
A
HOH
3025
2
HOH
HOH
3025
A
HOH
3027
2
HOH
HOH
3027
A
HOH
3028
2
HOH
HOH
3028
A
HOH
3035
2
HOH
HOH
3035
A
HOH
3036
2
HOH
HOH
3036
A
HOH
3040
2
HOH
HOH
3040
A
HOH
3041
2
HOH
HOH
3041
A
HOH
3042
2
HOH
HOH
3042
A
HOH
3046
2
HOH
HOH
3046
A
HOH
3048
2
HOH
HOH
3048
A
HOH
3049
2
HOH
HOH
3049
A
HOH
3050
2
HOH
HOH
3050
A
HOH
3051
2
HOH
HOH
3051
A
HOH
3052
2
HOH
HOH
3052
A
HOH
3054
2
HOH
HOH
3054
A
HOH
3055
2
HOH
HOH
3055
A
HOH
3059
2
HOH
HOH
3059
A
HOH
3062
2
HOH
HOH
3062
A
HOH
3001
2
HOH
HOH
3001
B
HOH
3002
2
HOH
HOH
3002
B
HOH
3003
2
HOH
HOH
3003
B
HOH
3005
2
HOH
HOH
3005
B
HOH
3006
2
HOH
HOH
3006
B
HOH
3009
2
HOH
HOH
3009
B
HOH
3012
2
HOH
HOH
3012
B
HOH
3013
2
HOH
HOH
3013
B
HOH
3014
2
HOH
HOH
3014
B
HOH
3018
2
HOH
HOH
3018
B
HOH
3019
2
HOH
HOH
3019
B
HOH
3022
2
HOH
HOH
3022
B
HOH
3024
2
HOH
HOH
3024
B
HOH
3026
2
HOH
HOH
3026
B
HOH
3029
2
HOH
HOH
3029
B
HOH
3030
2
HOH
HOH
3030
B
HOH
3031
2
HOH
HOH
3031
B
HOH
3032
2
HOH
HOH
3032
B
HOH
3033
2
HOH
HOH
3033
B
HOH
3034
2
HOH
HOH
3034
B
HOH
3037
2
HOH
HOH
3037
B
HOH
3038
2
HOH
HOH
3038
B
HOH
3039
2
HOH
HOH
3039
B
HOH
3043
2
HOH
HOH
3043
B
HOH
3044
2
HOH
HOH
3044
B
HOH
3045
2
HOH
HOH
3045
B
HOH
3047
2
HOH
HOH
3047
B
HOH
3053
2
HOH
HOH
3053
B
HOH
3056
2
HOH
HOH
3056
B
HOH
3057
2
HOH
HOH
3057
B
HOH
3058
2
HOH
HOH
3058
B
HOH
3060
2
HOH
HOH
3060
B
HOH
3061
2
HOH
HOH
3061
B
HOH
3063
2
HOH
HOH
3063
B
HOH
3064
2
HOH
HOH
3064
B
HOH
3065
2
HOH
HOH
3065
B
HOH
3066
2
HOH
HOH
3066
B
HOH
3067
2
HOH
HOH
3067
B
n
1
1090
A
n
2
1091
A
n
3
1092
A
n
4
1093
A
n
5
1094
A
n
6
1095
A
n
7
1096
A
n
8
1097
A
n
9
1098
A
n
10
1099
A
THR
1100
n
11
THR
1100
A
SER
1101
n
12
SER
1101
A
PHE
1102
n
13
PHE
1102
A
SER
1103
n
14
SER
1103
A
ASP
1104
n
15
ASP
1104
A
SER
1105
n
16
SER
1105
A
ILE
1106
n
17
ILE
1106
A
LYS
1107
n
18
LYS
1107
A
GLN
1108
n
19
GLN
1108
A
LEU
1109
n
20
LEU
1109
A
ALA
1110
n
21
ALA
1110
A
ALA
1111
n
22
ALA
1111
A
GLU
1112
n
23
GLU
1112
A
THR
1113
n
24
THR
1113
A
LEU
1114
n
25
LEU
1114
A
PRO
1115
n
26
PRO
1115
A
LYS
1116
n
27
LYS
1116
A
TYR
1117
n
28
TYR
1117
A
MSE
1118
n
29
MSE
1118
A
GLN
1119
n
30
GLN
1119
A
GLN
1120
n
31
GLN
1120
A
LEU
1121
n
32
LEU
1121
A
ASN
1122
n
33
ASN
1122
A
SER
1123
n
34
SER
1123
A
LEU
1124
n
35
LEU
1124
A
ASP
1125
n
36
ASP
1125
A
ALA
1126
n
37
ALA
1126
A
GLU
1127
n
38
GLU
1127
A
MSE
1128
n
39
MSE
1128
A
LEU
1129
n
40
LEU
1129
A
GLN
1130
n
41
GLN
1130
A
LYS
1131
n
42
LYS
1131
A
ASN
1132
n
43
ASN
1132
A
HIS
1133
n
44
HIS
1133
A
ASP
1134
n
45
ASP
1134
A
GLN
1135
n
46
GLN
1135
A
PHE
1136
n
47
PHE
1136
A
ALA
1137
n
48
ALA
1137
A
THR
1138
n
49
THR
1138
A
GLY
1139
n
50
GLY
1139
A
SER
1140
n
51
SER
1140
A
GLY
1141
n
52
GLY
1141
A
PRO
1142
n
53
PRO
1142
A
LEU
1143
n
54
LEU
1143
A
ARG
1144
n
55
ARG
1144
A
GLY
1145
n
56
GLY
1145
A
SER
1146
n
57
SER
1146
A
ILE
1147
n
58
ILE
1147
A
THR
1148
n
59
THR
1148
A
GLN
1149
n
60
GLN
1149
A
CYS
1150
n
61
CYS
1150
A
GLN
1151
n
62
GLN
1151
A
GLY
1152
n
63
GLY
1152
A
LEU
1153
n
64
LEU
1153
A
MSE
1154
n
65
MSE
1154
A
GLN
1155
n
66
GLN
1155
A
PHE
1156
n
67
PHE
1156
A
CYS
1157
n
68
CYS
1157
A
GLY
1158
n
69
GLY
1158
A
GLY
1159
n
70
GLY
1159
A
GLU
1160
n
71
GLU
1160
A
LEU
1161
n
72
LEU
1161
A
GLN
1162
n
73
GLN
1162
A
ALA
1163
n
74
ALA
1163
A
GLU
1164
n
75
GLU
1164
A
ALA
1165
n
76
ALA
1165
A
SER
1166
n
77
SER
1166
A
ALA
1167
n
78
ALA
1167
A
ILE
1168
n
79
ILE
1168
A
LEU
1169
n
80
LEU
1169
A
ASN
1170
n
81
ASN
1170
A
THR
1171
n
82
THR
1171
A
PRO
1172
n
83
PRO
1172
A
VAL
1173
n
84
VAL
1173
A
CYS
1174
n
85
CYS
1174
A
GLY
1175
n
86
GLY
1175
A
ILE
1176
n
87
ILE
1176
A
PRO
1177
n
88
PRO
1177
A
PHE
1178
n
89
PHE
1178
A
SER
1179
n
90
SER
1179
A
GLN
1180
n
91
GLN
1180
A
TRP
1181
n
92
TRP
1181
A
GLY
1182
n
93
GLY
1182
A
THR
1183
n
94
THR
1183
A
ILE
1184
n
95
ILE
1184
A
GLY
1185
n
96
GLY
1185
A
GLY
1186
n
97
GLY
1186
A
ALA
1187
n
98
ALA
1187
A
ALA
1188
n
99
ALA
1188
A
SER
1189
n
100
SER
1189
A
ALA
1190
n
101
ALA
1190
A
TYR
1191
n
102
TYR
1191
A
VAL
1192
n
103
VAL
1192
A
ALA
1193
n
104
ALA
1193
A
SER
1194
n
105
SER
1194
A
GLY
1195
n
106
GLY
1195
A
VAL
1196
n
107
VAL
1196
A
ASP
1197
n
108
ASP
1197
A
LEU
1198
n
109
LEU
1198
A
THR
1199
n
110
THR
1199
A
GLN
1200
n
111
GLN
1200
A
ALA
1201
n
112
ALA
1201
A
ALA
1202
n
113
ALA
1202
A
ASN
1203
n
114
ASN
1203
A
GLU
1204
n
115
GLU
1204
A
ILE
1205
n
116
ILE
1205
A
LYS
1206
n
117
LYS
1206
A
GLY
1207
n
118
GLY
1207
A
LEU
1208
n
119
LEU
1208
A
ALA
1209
n
120
ALA
1209
A
GLN
1210
n
121
GLN
1210
A
GLN
1211
n
122
GLN
1211
A
MSE
1212
n
123
MSE
1212
A
GLN
1213
n
124
GLN
1213
A
LYS
1214
n
125
LYS
1214
A
LEU
1215
n
126
LEU
1215
A
LEU
1216
n
127
LEU
1216
A
SER
1217
n
128
SER
1217
A
LEU
1218
n
129
LEU
1218
A
MSE
1219
n
130
MSE
1219
A
n
131
1220
A
n
132
1221
A
n
133
1222
A
n
134
1223
A
n
135
1224
A
n
136
1225
A
n
1
2090
B
n
2
2091
B
n
3
2092
B
n
4
2093
B
n
5
2094
B
n
6
2095
B
n
7
2096
B
n
8
2097
B
n
9
2098
B
n
10
2099
B
THR
2100
n
11
THR
2100
B
SER
2101
n
12
SER
2101
B
PHE
2102
n
13
PHE
2102
B
SER
2103
n
14
SER
2103
B
ASP
2104
n
15
ASP
2104
B
SER
2105
n
16
SER
2105
B
ILE
2106
n
17
ILE
2106
B
LYS
2107
n
18
LYS
2107
B
GLN
2108
n
19
GLN
2108
B
LEU
2109
n
20
LEU
2109
B
ALA
2110
n
21
ALA
2110
B
ALA
2111
n
22
ALA
2111
B
GLU
2112
n
23
GLU
2112
B
THR
2113
n
24
THR
2113
B
LEU
2114
n
25
LEU
2114
B
PRO
2115
n
26
PRO
2115
B
LYS
2116
n
27
LYS
2116
B
TYR
2117
n
28
TYR
2117
B
MSE
2118
n
29
MSE
2118
B
GLN
2119
n
30
GLN
2119
B
GLN
2120
n
31
GLN
2120
B
LEU
2121
n
32
LEU
2121
B
ASN
2122
n
33
ASN
2122
B
SER
2123
n
34
SER
2123
B
LEU
2124
n
35
LEU
2124
B
ASP
2125
n
36
ASP
2125
B
ALA
2126
n
37
ALA
2126
B
GLU
2127
n
38
GLU
2127
B
MSE
2128
n
39
MSE
2128
B
LEU
2129
n
40
LEU
2129
B
GLN
2130
n
41
GLN
2130
B
LYS
2131
n
42
LYS
2131
B
ASN
2132
n
43
ASN
2132
B
HIS
2133
n
44
HIS
2133
B
ASP
2134
n
45
ASP
2134
B
GLN
2135
n
46
GLN
2135
B
PHE
2136
n
47
PHE
2136
B
ALA
2137
n
48
ALA
2137
B
THR
2138
n
49
THR
2138
B
GLY
2139
n
50
GLY
2139
B
SER
2140
n
51
SER
2140
B
GLY
2141
n
52
GLY
2141
B
PRO
2142
n
53
PRO
2142
B
LEU
2143
n
54
LEU
2143
B
ARG
2144
n
55
ARG
2144
B
GLY
2145
n
56
GLY
2145
B
SER
2146
n
57
SER
2146
B
ILE
2147
n
58
ILE
2147
B
THR
2148
n
59
THR
2148
B
GLN
2149
n
60
GLN
2149
B
CYS
2150
n
61
CYS
2150
B
GLN
2151
n
62
GLN
2151
B
GLY
2152
n
63
GLY
2152
B
LEU
2153
n
64
LEU
2153
B
MSE
2154
n
65
MSE
2154
B
GLN
2155
n
66
GLN
2155
B
PHE
2156
n
67
PHE
2156
B
CYS
2157
n
68
CYS
2157
B
GLY
2158
n
69
GLY
2158
B
GLY
2159
n
70
GLY
2159
B
GLU
2160
n
71
GLU
2160
B
LEU
2161
n
72
LEU
2161
B
GLN
2162
n
73
GLN
2162
B
ALA
2163
n
74
ALA
2163
B
GLU
2164
n
75
GLU
2164
B
ALA
2165
n
76
ALA
2165
B
SER
2166
n
77
SER
2166
B
ALA
2167
n
78
ALA
2167
B
ILE
2168
n
79
ILE
2168
B
LEU
2169
n
80
LEU
2169
B
ASN
2170
n
81
ASN
2170
B
THR
2171
n
82
THR
2171
B
PRO
2172
n
83
PRO
2172
B
VAL
2173
n
84
VAL
2173
B
CYS
2174
n
85
CYS
2174
B
GLY
2175
n
86
GLY
2175
B
ILE
2176
n
87
ILE
2176
B
PRO
2177
n
88
PRO
2177
B
PHE
2178
n
89
PHE
2178
B
SER
2179
n
90
SER
2179
B
GLN
2180
n
91
GLN
2180
B
TRP
2181
n
92
TRP
2181
B
GLY
2182
n
93
GLY
2182
B
THR
2183
n
94
THR
2183
B
ILE
2184
n
95
ILE
2184
B
GLY
2185
n
96
GLY
2185
B
GLY
2186
n
97
GLY
2186
B
ALA
2187
n
98
ALA
2187
B
ALA
2188
n
99
ALA
2188
B
SER
2189
n
100
SER
2189
B
ALA
2190
n
101
ALA
2190
B
TYR
2191
n
102
TYR
2191
B
VAL
2192
n
103
VAL
2192
B
ALA
2193
n
104
ALA
2193
B
SER
2194
n
105
SER
2194
B
GLY
2195
n
106
GLY
2195
B
VAL
2196
n
107
VAL
2196
B
ASP
2197
n
108
ASP
2197
B
LEU
2198
n
109
LEU
2198
B
THR
2199
n
110
THR
2199
B
GLN
2200
n
111
GLN
2200
B
ALA
2201
n
112
ALA
2201
B
ALA
2202
n
113
ALA
2202
B
ASN
2203
n
114
ASN
2203
B
GLU
2204
n
115
GLU
2204
B
ILE
2205
n
116
ILE
2205
B
LYS
2206
n
117
LYS
2206
B
GLY
2207
n
118
GLY
2207
B
LEU
2208
n
119
LEU
2208
B
ALA
2209
n
120
ALA
2209
B
GLN
2210
n
121
GLN
2210
B
GLN
2211
n
122
GLN
2211
B
MSE
2212
n
123
MSE
2212
B
GLN
2213
n
124
GLN
2213
B
LYS
2214
n
125
LYS
2214
B
LEU
2215
n
126
LEU
2215
B
LEU
2216
n
127
LEU
2216
B
SER
2217
n
128
SER
2217
B
LEU
2218
n
129
LEU
2218
B
MSE
2219
n
130
MSE
2219
B
HIS
2220
n
131
HIS
2220
B
n
132
2221
B
n
133
2222
B
n
134
2223
B
n
135
2224
B
n
136
2225
B
0.1740000
0.1960000
0.2130000
8.0
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
MSE
1118
SELENOMETHIONINE
A
MSE
29
MET
A
MSE
1128
SELENOMETHIONINE
A
MSE
39
MET
A
MSE
1154
SELENOMETHIONINE
A
MSE
65
MET
A
MSE
1212
SELENOMETHIONINE
A
MSE
123
MET
A
MSE
1219
SELENOMETHIONINE
A
MSE
130
MET
B
MSE
2118
SELENOMETHIONINE
B
MSE
29
MET
B
MSE
2128
SELENOMETHIONINE
B
MSE
39
MET
B
MSE
2154
SELENOMETHIONINE
B
MSE
65
MET
B
MSE
2212
SELENOMETHIONINE
B
MSE
123
MET
B
MSE
2219
SELENOMETHIONINE
B
MSE
130
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
1173
A
N
VAL
84
A
O
ILE
1176
A
O
ILE
87
B
N
VAL
2173
B
N
VAL
84
B
O
ILE
2176
B
O
ILE
87
1
A
ALA
1090
A
ALA
1
1
Y
1
A
PRO
1091
A
PRO
2
1
Y
1
A
THR
1092
A
THR
3
1
Y
1
A
PRO
1093
A
PRO
4
1
Y
1
A
ALA
1094
A
ALA
5
1
Y
1
A
GLN
1095
A
GLN
6
1
Y
1
A
MSE
1096
A
MSE
7
1
Y
1
A
PRO
1097
A
PRO
8
1
Y
1
A
SER
1098
A
SER
9
1
Y
1
A
PRO
1099
A
PRO
10
1
Y
1
A
HIS
1220
A
HIS
131
1
Y
1
A
HIS
1221
A
HIS
132
1
Y
1
A
HIS
1222
A
HIS
133
1
Y
1
A
HIS
1223
A
HIS
134
1
Y
1
A
HIS
1224
A
HIS
135
1
Y
1
A
HIS
1225
A
HIS
136
1
Y
1
B
ALA
2090
B
ALA
1
1
Y
1
B
PRO
2091
B
PRO
2
1
Y
1
B
THR
2092
B
THR
3
1
Y
1
B
PRO
2093
B
PRO
4
1
Y
1
B
ALA
2094
B
ALA
5
1
Y
1
B
GLN
2095
B
GLN
6
1
Y
1
B
MSE
2096
B
MSE
7
1
Y
1
B
PRO
2097
B
PRO
8
1
Y
1
B
SER
2098
B
SER
9
1
Y
1
B
PRO
2099
B
PRO
10
1
Y
1
B
HIS
2221
B
HIS
132
1
Y
1
B
HIS
2222
B
HIS
133
1
Y
1
B
HIS
2223
B
HIS
134
1
Y
1
B
HIS
2224
B
HIS
135
1
Y
1
B
HIS
2225
B
HIS
136
1
Y
1
14.61
2.30
115.30
129.91
B
B
B
CA
CB
CG
LEU
LEU
LEU
2215
2215
2215
N
1
A
ASN
1122
-59.78
-9.09
1
A
ALA
1193
-80.38
41.16
1
B
SER
2101
-31.33
141.59
1
B
LEU
2198
-78.77
29.85
33
0.9624
3.0606
-0.4784
0
-0.5418
0
Refinement on unmerged Friedel opposites (due to small but tangible selenium anomalous contribution).
Refinement by conjugated-gradient least-squares.
Selenomethionine restraints derived from Hic-Up.
Two monomers were restrained by NCS (1,4-restraints generated by NCSY in SHELXL). Removal of the NCS restraints does not result in significant
changes in the model. The structure was refined using home data (wavelength 1.5418).
0.2383000
0.1967000
0.1978000
0.1761000
2.25
100
1665
22062
18478
96.0
random
1
isotropic individual atomic B factors
THROUGHOUT
0
0
MAD
Engh-Huber
Babinet (SHELXL)
250.018
0.879
0.22
2.25
100
67
1843
0
0
1776
0.027
0.007
0.02
0.031
0.007
39
2.25
100
1HY5
22062
18478
0
0
0.0400000
0.0600000
1
16
3.2
96
0.2000000
2.25
2.33
4.0
2291
3.0
96.2
phasing
SOLVE
refinement
SHELXL-97
data reduction
DENZO
data scaling
SCALEPACK
OUTER MEMBRANE VIRULENCE PROTEIN YOPE
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF YOPE-YERSINIA PESTIS GAP EFFECTOR PROTEIN.
1
N
N
1
N
N
2
N
N
2
N
N
biological assembly is a monomer - crystal AU contains a dimer. RMSD of the Ca positions within the dimer is 0.34 A
A
SER
1101
A
SER
12
HELX_P
A
ASN
1122
A
ASN
33
1
1
22
A
ASP
1125
A
ASP
36
HELX_P
A
HIS
1133
A
HIS
44
1
2
9
A
ASN
1132
A
ASN
43
HELX_P
A
ALA
1137
A
ALA
48
1
3
6
A
GLY
1141
A
GLY
52
HELX_P
A
CYS
1157
A
CYS
68
1
4
17
A
GLY
1158
A
GLY
69
HELX_P
A
THR
1171
A
THR
82
1
5
14
A
SER
1179
A
SER
90
HELX_P
A
THR
1183
A
THR
94
5
6
5
A
GLY
1186
A
GLY
97
HELX_P
A
ALA
1193
A
ALA
104
1
7
8
A
LEU
1198
A
LEU
109
HELX_P
A
MSE
1212
A
MSE
123
1
8
15
A
MSE
1212
A
MSE
123
HELX_P
A
MSE
1219
A
MSE
130
1
9
8
B
SER
2101
B
SER
12
HELX_P
B
SER
2123
B
SER
34
1
10
23
B
ASP
2125
B
ASP
36
HELX_P
B
HIS
2133
B
HIS
44
1
11
9
B
ASN
2132
B
ASN
43
HELX_P
B
ALA
2137
B
ALA
48
1
12
6
B
GLY
2141
B
GLY
52
HELX_P
B
CYS
2157
B
CYS
68
1
13
17
B
GLY
2158
B
GLY
69
HELX_P
B
ASN
2170
B
ASN
81
1
14
13
B
SER
2179
B
SER
90
HELX_P
B
TRP
2181
B
TRP
92
5
15
3
B
GLY
2186
B
GLY
97
HELX_P
B
SER
2194
B
SER
105
1
16
9
B
LEU
2198
B
LEU
109
HELX_P
B
LEU
2218
B
LEU
129
1
17
21
covale
1.329
A
TYR
1117
A
C
TYR
28
1_555
A
MSE
1118
A
N
MSE
29
1_555
covale
1.331
A
MSE
1118
A
C
MSE
29
1_555
A
GLN
1119
A
N
GLN
30
1_555
covale
1.330
A
GLU
1127
A
C
GLU
38
1_555
A
MSE
1128
A
N
MSE
39
1_555
covale
1.341
A
MSE
1128
A
C
MSE
39
1_555
A
LEU
1129
A
N
LEU
40
1_555
covale
1.327
A
LEU
1153
A
C
LEU
64
1_555
A
MSE
1154
A
N
MSE
65
1_555
covale
1.336
A
MSE
1154
A
C
MSE
65
1_555
A
GLN
1155
A
N
GLN
66
1_555
covale
1.321
A
GLN
1211
A
C
GLN
122
1_555
A
MSE
1212
A
N
MSE
123
1_555
covale
1.334
A
MSE
1212
A
C
MSE
123
1_555
A
GLN
1213
A
N
GLN
124
1_555
covale
1.333
A
LEU
1218
A
C
LEU
129
1_555
A
MSE
1219
A
N
MSE
130
1_555
covale
1.319
B
TYR
2117
B
C
TYR
28
1_555
B
MSE
2118
B
N
MSE
29
1_555
covale
1.344
B
MSE
2118
B
C
MSE
29
1_555
B
GLN
2119
B
N
GLN
30
1_555
covale
1.331
B
GLU
2127
B
C
GLU
38
1_555
B
MSE
2128
B
N
MSE
39
1_555
covale
1.342
B
MSE
2128
B
C
MSE
39
1_555
B
LEU
2129
B
N
LEU
40
1_555
covale
1.327
B
LEU
2153
B
C
LEU
64
1_555
B
MSE
2154
B
N
MSE
65
1_555
covale
1.336
B
MSE
2154
B
C
MSE
65
1_555
B
GLN
2155
B
N
GLN
66
1_555
covale
1.326
B
GLN
2211
B
C
GLN
122
1_555
B
MSE
2212
B
N
MSE
123
1_555
covale
1.340
B
MSE
2212
B
C
MSE
123
1_555
B
GLN
2213
B
N
GLN
124
1_555
covale
1.327
B
LEU
2218
B
C
LEU
129
1_555
B
MSE
2219
B
N
MSE
130
1_555
covale
1.335
B
MSE
2219
B
C
MSE
130
1_555
B
HIS
2220
B
N
HIS
131
1_555
TOXIN
four helix up-down-up-down antiparallel bundle, beta hairpin, arginine finger, toxin
YOPE_YERPE
UNP
1
90
P31493
APTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAIL
NTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM
90
219
1HY5
1090
1219
P31493
A
1
1
130
90
219
1HY5
2090
2219
P31493
B
1
1
130
1
MET
modified residue
MSE
1096
1HY5
A
P31493
UNP
96
7
1
MET
modified residue
MSE
1118
1HY5
A
P31493
UNP
118
29
1
MET
modified residue
MSE
1128
1HY5
A
P31493
UNP
128
39
1
MET
modified residue
MSE
1154
1HY5
A
P31493
UNP
154
65
1
MET
modified residue
MSE
1212
1HY5
A
P31493
UNP
212
123
1
MET
modified residue
MSE
1219
1HY5
A
P31493
UNP
219
130
1
EXPRESSION TAG
HIS
1220
1HY5
A
P31493
UNP
131
1
EXPRESSION TAG
HIS
1221
1HY5
A
P31493
UNP
132
1
EXPRESSION TAG
HIS
1222
1HY5
A
P31493
UNP
133
1
EXPRESSION TAG
HIS
1223
1HY5
A
P31493
UNP
134
1
EXPRESSION TAG
HIS
1224
1HY5
A
P31493
UNP
135
1
EXPRESSION TAG
HIS
1225
1HY5
A
P31493
UNP
136
2
MET
modified residue
MSE
2096
1HY5
B
P31493
UNP
96
7
2
MET
modified residue
MSE
2118
1HY5
B
P31493
UNP
118
29
2
MET
modified residue
MSE
2128
1HY5
B
P31493
UNP
128
39
2
MET
modified residue
MSE
2154
1HY5
B
P31493
UNP
154
65
2
MET
modified residue
MSE
2212
1HY5
B
P31493
UNP
212
123
2
MET
modified residue
MSE
2219
1HY5
B
P31493
UNP
219
130
2
EXPRESSION TAG
HIS
2220
1HY5
B
P31493
UNP
131
2
EXPRESSION TAG
HIS
2221
1HY5
B
P31493
UNP
132
2
EXPRESSION TAG
HIS
2222
1HY5
B
P31493
UNP
133
2
EXPRESSION TAG
HIS
2223
1HY5
B
P31493
UNP
134
2
EXPRESSION TAG
HIS
2224
1HY5
B
P31493
UNP
135
2
EXPRESSION TAG
HIS
2225
1HY5
B
P31493
UNP
136
2
2
anti-parallel
anti-parallel
A
PRO
1172
A
PRO
83
A
VAL
1173
A
VAL
84
A
ILE
1176
A
ILE
87
A
PRO
1177
A
PRO
88
B
PRO
2172
B
PRO
83
B
VAL
2173
B
VAL
84
B
ILE
2176
B
ILE
87
B
PRO
2177
B
PRO
88
5
C 1 2 1