1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kutateladze, T.
Overduin, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H14 O12 P2
340.116
PHOSPHORIC ACID MONO-(2,3,4,6-TETRAHYDROXY-5-PHOSPHONOOXY-CYCLOHEXYL) ESTER
INOSITOL 1,3-BISPHOSPHATE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Science
SCIEAS
0038
0036-8075
291
1793
1796
10.1126/science.291.5509.1793
11230696
Structural mechanism of endosome docking by the FYVE domain.
2001
10.2210/pdb1hyi/pdb
pdb_00001hyi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7232.300
ENDOSOME-ASSOCIATED PROTEIN
FYVE DOMAIN (RESIDUES 1346-1410)
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
340.116
PHOSPHORIC ACID MONO-(2,3,4,6-TETRAHYDROXY-5-PHOSPHONOOXY-CYCLOHEXYL) ESTER
1
syn
non-polymer
no
no
RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQG
RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
BL21PLYSS
PLASMID
PGEX
database_2
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2001-03-14
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1HYJ contains the FYVE domain without inositol 1,3-bisphosphate
RCSB
Y
RCSB
2001-01-19
REL
ZN
ZINC ION
ITP
PHOSPHORIC ACID MONO-(2,3,4,6-TETRAHYDROXY-5-PHOSPHONOOXY-CYCLOHEXYL) ESTER
structures with the lowest energy
198
20
2D NOESY
2D NOESY
3D_15N-separated_NOESY
3D_13C-separated_NOESY
4D_13C-separated_NOESY
HNHA
200 mM KCl
6.7
1
atm
298
K
simulated annealing
1
closest to the average
1mM FYVE domain; 20 mM d-Tris buffer; pH 6.7; 200 mM KCl; 20 mM d-DTT; 1 mM NaN3
90% H2O/10% D2O
1mM FYVE domain; 20 mM d-Tris buffer; pH 6.7; 200 mM KCl; 20 mM d-DTT; 1 mM NaN3
99.99% D2O
Delaglio
processing
NMRPipe
1
Brunger
structure solution
X-PLOR
3.84
Brunger
refinement
X-PLOR
3.84
600
Varian
INOVA
500
Varian
INOVA
ZN
66
2
ZN
ZN
66
A
ZN
67
2
ZN
ZN
67
A
ITP
68
3
ITP
ITP
68
A
ARG
1
n
1
ARG
1
A
LYS
2
n
2
LYS
2
A
TRP
3
n
3
TRP
3
A
ALA
4
n
4
ALA
4
A
GLU
5
n
5
GLU
5
A
ASP
6
n
6
ASP
6
A
ASN
7
n
7
ASN
7
A
GLU
8
n
8
GLU
8
A
VAL
9
n
9
VAL
9
A
GLN
10
n
10
GLN
10
A
ASN
11
n
11
ASN
11
A
CYS
12
n
12
CYS
12
A
MET
13
n
13
MET
13
A
ALA
14
n
14
ALA
14
A
CYS
15
n
15
CYS
15
A
GLY
16
n
16
GLY
16
A
LYS
17
n
17
LYS
17
A
GLY
18
n
18
GLY
18
A
PHE
19
n
19
PHE
19
A
SER
20
n
20
SER
20
A
VAL
21
n
21
VAL
21
A
THR
22
n
22
THR
22
A
VAL
23
n
23
VAL
23
A
ARG
24
n
24
ARG
24
A
ARG
25
n
25
ARG
25
A
HIS
26
n
26
HIS
26
A
HIS
27
n
27
HIS
27
A
CYS
28
n
28
CYS
28
A
ARG
29
n
29
ARG
29
A
GLN
30
n
30
GLN
30
A
CYS
31
n
31
CYS
31
A
GLY
32
n
32
GLY
32
A
ASN
33
n
33
ASN
33
A
ILE
34
n
34
ILE
34
A
PHE
35
n
35
PHE
35
A
CYS
36
n
36
CYS
36
A
ALA
37
n
37
ALA
37
A
GLU
38
n
38
GLU
38
A
CYS
39
n
39
CYS
39
A
SER
40
n
40
SER
40
A
ALA
41
n
41
ALA
41
A
LYS
42
n
42
LYS
42
A
ASN
43
n
43
ASN
43
A
ALA
44
n
44
ALA
44
A
LEU
45
n
45
LEU
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
SER
48
n
48
SER
48
A
SER
49
n
49
SER
49
A
LYS
50
n
50
LYS
50
A
LYS
51
n
51
LYS
51
A
PRO
52
n
52
PRO
52
A
VAL
53
n
53
VAL
53
A
ARG
54
n
54
ARG
54
A
VAL
55
n
55
VAL
55
A
CYS
56
n
56
CYS
56
A
ASP
57
n
57
ASP
57
A
ALA
58
n
58
ALA
58
A
CYS
59
n
59
CYS
59
A
PHE
60
n
60
PHE
60
A
ASN
61
n
61
ASN
61
A
ASP
62
n
62
ASP
62
A
LEU
63
n
63
LEU
63
A
GLN
64
n
64
GLN
64
A
GLY
65
n
65
GLY
65
A
author_defined_assembly
1
monomeric
A
CYS
12
A
SG
CYS
12
1_555
A
ZN
66
B
ZN
ZN
1_555
A
CYS
15
A
SG
CYS
15
1_555
79.1
A
CYS
12
A
SG
CYS
12
1_555
A
ZN
66
B
ZN
ZN
1_555
A
CYS
36
A
SG
CYS
36
1_555
134.5
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
66
B
ZN
ZN
1_555
A
CYS
36
A
SG
CYS
36
1_555
87.1
A
CYS
12
A
SG
CYS
12
1_555
A
ZN
66
B
ZN
ZN
1_555
A
CYS
39
A
SG
CYS
39
1_555
110.3
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
66
B
ZN
ZN
1_555
A
CYS
39
A
SG
CYS
39
1_555
128.9
A
CYS
36
A
SG
CYS
36
1_555
A
ZN
66
B
ZN
ZN
1_555
A
CYS
39
A
SG
CYS
39
1_555
112.0
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
67
C
ZN
ZN
1_555
A
CYS
31
A
SG
CYS
31
1_555
93.5
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
67
C
ZN
ZN
1_555
A
CYS
56
A
SG
CYS
56
1_555
116.8
A
CYS
31
A
SG
CYS
31
1_555
A
ZN
67
C
ZN
ZN
1_555
A
CYS
56
A
SG
CYS
56
1_555
149.7
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
67
C
ZN
ZN
1_555
A
CYS
59
A
SG
CYS
59
1_555
76.0
A
CYS
31
A
SG
CYS
31
1_555
A
ZN
67
C
ZN
ZN
1_555
A
CYS
59
A
SG
CYS
59
1_555
122.4
A
CYS
56
A
SG
CYS
56
1_555
A
ZN
67
C
ZN
ZN
1_555
A
CYS
59
A
SG
CYS
59
1_555
68.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
26
A
O
HIS
26
A
N
PHE
35
A
N
PHE
35
A
N
THR
46
A
N
THR
46
A
O
LYS
51
A
O
LYS
51
1
A
A
O
H
HIS
PHE
26
35
1.57
3
A
A
H
O
MET
ILE
13
34
1.46
4
A
A
O
H
ALA
ASP
4
6
1.53
5
A
A
O
H
HIS
PHE
26
35
1.45
5
A
A
H
O
CYS
ASN
28
33
1.57
6
A
A
H
O
MET
ILE
13
34
1.56
6
A
A
H
O
ARG
ARG
29
54
1.58
6
A
A
O
H
HIS
PHE
26
35
1.58
7
A
A
H
O
MET
ILE
13
34
1.47
8
A
A
H
O
MET
ILE
13
34
1.48
8
A
A
O
H
HIS
PHE
26
35
1.56
8
A
A
O
H
TRP
GLU
3
5
1.57
9
A
A
H
O
CYS
ASN
28
33
1.55
10
A
A
H
O
CYS
ASN
28
33
1.55
12
A
A
O
H
HIS
PHE
26
35
1.58
14
A
A
O
H
ALA
VAL
44
53
1.56
15
A
A
H
O
CYS
ASN
28
33
1.51
16
A
A
H
O
MET
ILE
13
34
1.53
16
A
A
O
H
HIS
PHE
26
35
1.59
16
A
A
O
H
SER
LYS
49
51
1.59
17
A
A
O
HD21
ASP
ASN
57
61
1.51
18
A
A
O
H
HIS
PHE
26
35
1.46
19
A
A
O
H
ALA
ASP
4
6
1.57
19
A
A
O
H
HIS
PHE
26
35
1.57
19
A
A
H
O
MET
ILE
13
34
1.58
20
A
A
O
H
HIS
PHE
26
35
1.52
1
A
ARG
1
0.093
SIDE CHAIN
1
A
ARG
24
0.220
SIDE CHAIN
1
A
ARG
25
0.131
SIDE CHAIN
1
A
ARG
29
0.303
SIDE CHAIN
1
A
ARG
54
0.216
SIDE CHAIN
2
A
ARG
1
0.317
SIDE CHAIN
2
A
ARG
24
0.236
SIDE CHAIN
2
A
ARG
25
0.266
SIDE CHAIN
2
A
ARG
29
0.084
SIDE CHAIN
2
A
ARG
54
0.245
SIDE CHAIN
3
A
ARG
1
0.306
SIDE CHAIN
3
A
ARG
25
0.190
SIDE CHAIN
3
A
ARG
54
0.186
SIDE CHAIN
4
A
ARG
1
0.247
SIDE CHAIN
4
A
ARG
24
0.261
SIDE CHAIN
4
A
ARG
25
0.228
SIDE CHAIN
4
A
ARG
29
0.202
SIDE CHAIN
4
A
ARG
54
0.288
SIDE CHAIN
5
A
ARG
1
0.168
SIDE CHAIN
5
A
ARG
24
0.201
SIDE CHAIN
5
A
ARG
25
0.292
SIDE CHAIN
5
A
ARG
29
0.109
SIDE CHAIN
5
A
ARG
54
0.307
SIDE CHAIN
6
A
ARG
1
0.130
SIDE CHAIN
6
A
ARG
24
0.221
SIDE CHAIN
6
A
ARG
25
0.179
SIDE CHAIN
6
A
ARG
29
0.284
SIDE CHAIN
6
A
ARG
54
0.221
SIDE CHAIN
7
A
ARG
1
0.247
SIDE CHAIN
7
A
ARG
24
0.302
SIDE CHAIN
7
A
ARG
25
0.231
SIDE CHAIN
7
A
ARG
29
0.240
SIDE CHAIN
7
A
ARG
54
0.318
SIDE CHAIN
8
A
ARG
1
0.180
SIDE CHAIN
8
A
ARG
24
0.308
SIDE CHAIN
8
A
ARG
25
0.292
SIDE CHAIN
8
A
ARG
29
0.289
SIDE CHAIN
8
A
ARG
54
0.077
SIDE CHAIN
9
A
ARG
1
0.209
SIDE CHAIN
9
A
ARG
24
0.317
SIDE CHAIN
9
A
ARG
25
0.125
SIDE CHAIN
9
A
ARG
29
0.203
SIDE CHAIN
10
A
ARG
1
0.286
SIDE CHAIN
10
A
ARG
24
0.245
SIDE CHAIN
10
A
ARG
25
0.268
SIDE CHAIN
10
A
ARG
54
0.231
SIDE CHAIN
11
A
ARG
1
0.211
SIDE CHAIN
11
A
ARG
24
0.098
SIDE CHAIN
11
A
ARG
25
0.253
SIDE CHAIN
11
A
ARG
29
0.172
SIDE CHAIN
12
A
ARG
1
0.206
SIDE CHAIN
12
A
ARG
24
0.318
SIDE CHAIN
12
A
ARG
25
0.139
SIDE CHAIN
12
A
ARG
29
0.293
SIDE CHAIN
12
A
ARG
54
0.264
SIDE CHAIN
13
A
ARG
1
0.316
SIDE CHAIN
13
A
ARG
24
0.215
SIDE CHAIN
13
A
ARG
25
0.081
SIDE CHAIN
13
A
ARG
29
0.239
SIDE CHAIN
13
A
ARG
54
0.307
SIDE CHAIN
14
A
ARG
1
0.298
SIDE CHAIN
14
A
ARG
24
0.196
SIDE CHAIN
14
A
ARG
25
0.295
SIDE CHAIN
14
A
ARG
54
0.164
SIDE CHAIN
15
A
ARG
1
0.316
SIDE CHAIN
15
A
ARG
24
0.143
SIDE CHAIN
15
A
ARG
25
0.079
SIDE CHAIN
15
A
ARG
29
0.081
SIDE CHAIN
15
A
ARG
54
0.196
SIDE CHAIN
16
A
ARG
1
0.313
SIDE CHAIN
16
A
ARG
24
0.289
SIDE CHAIN
16
A
ARG
25
0.241
SIDE CHAIN
16
A
ARG
54
0.316
SIDE CHAIN
17
A
ARG
1
0.315
SIDE CHAIN
17
A
ARG
24
0.214
SIDE CHAIN
17
A
ARG
25
0.252
SIDE CHAIN
17
A
ARG
54
0.317
SIDE CHAIN
18
A
ARG
1
0.316
SIDE CHAIN
18
A
ARG
24
0.123
SIDE CHAIN
18
A
ARG
25
0.150
SIDE CHAIN
18
A
ARG
29
0.220
SIDE CHAIN
18
A
ARG
54
0.181
SIDE CHAIN
19
A
ARG
1
0.142
SIDE CHAIN
19
A
ARG
24
0.108
SIDE CHAIN
19
A
ARG
25
0.160
SIDE CHAIN
19
A
ARG
29
0.164
SIDE CHAIN
19
A
ARG
54
0.173
SIDE CHAIN
20
A
ARG
1
0.253
SIDE CHAIN
20
A
ARG
24
0.312
SIDE CHAIN
20
A
ARG
25
0.225
SIDE CHAIN
20
A
ARG
29
0.316
SIDE CHAIN
20
A
ARG
54
0.132
SIDE CHAIN
1
A
GLU
5
-98.96
58.37
1
A
ASP
6
58.48
18.73
1
A
GLU
8
174.68
32.95
1
A
VAL
9
-86.60
-76.25
1
A
ASN
11
-170.62
112.07
1
A
CYS
12
-47.87
166.82
1
A
ALA
14
-69.69
-91.64
1
A
PHE
19
-39.71
132.93
1
A
GLN
30
-87.50
-72.92
1
A
ALA
41
-81.75
37.55
2
A
ASP
6
-178.63
35.03
2
A
GLU
8
-156.91
49.81
2
A
VAL
9
-132.00
-48.69
2
A
GLN
10
28.51
37.23
2
A
ASN
11
-171.03
123.61
2
A
ALA
14
-75.02
-82.06
2
A
PHE
19
-39.78
146.32
2
A
SER
20
-142.72
-145.46
2
A
GLN
30
-77.34
-72.85
2
A
SER
49
-110.40
-135.84
2
A
LYS
50
-153.62
49.10
3
A
LYS
2
57.32
-82.02
3
A
GLU
5
-93.11
-85.84
3
A
ASP
6
-165.20
24.43
3
A
GLU
8
-149.41
-18.33
3
A
ALA
14
-78.84
-76.96
3
A
PHE
19
-41.29
161.37
3
A
SER
20
-157.47
-146.13
3
A
GLN
30
-82.25
-73.46
3
A
ALA
41
-80.49
44.12
3
A
LYS
50
57.90
17.22
4
A
TRP
3
-123.32
-134.19
4
A
ALA
4
-61.46
74.07
4
A
GLU
5
63.93
-58.33
4
A
ASN
7
-176.42
-44.77
4
A
ASN
11
-165.36
115.50
4
A
CYS
12
-41.34
155.75
4
A
ALA
14
-84.82
-81.05
4
A
PHE
19
-41.49
163.04
4
A
SER
20
-168.10
-153.67
4
A
SER
49
-74.85
-112.01
4
A
LYS
50
-177.83
30.62
5
A
LYS
2
-116.98
-73.87
5
A
TRP
3
-104.38
-161.97
5
A
ASP
6
43.90
29.84
5
A
GLU
8
-166.00
24.11
5
A
GLN
10
35.13
29.15
5
A
ASN
11
-171.11
114.50
5
A
ALA
14
-84.10
-80.00
5
A
PHE
19
-39.77
121.37
5
A
SER
20
-137.94
-151.36
5
A
GLN
30
-76.37
-94.31
5
A
LYS
50
30.14
36.27
5
A
ARG
54
-101.82
76.17
5
A
CYS
56
-48.05
156.21
6
A
TRP
3
-134.85
-83.52
6
A
GLU
5
-7.67
-61.92
6
A
GLN
10
-157.96
36.63
6
A
ASN
11
-162.68
118.36
6
A
ALA
14
-84.25
-87.42
6
A
PHE
19
-38.34
154.13
6
A
SER
20
-148.93
-144.03
6
A
GLN
30
-89.91
-72.16
6
A
SER
49
-131.26
-133.30
6
A
LYS
50
-151.83
62.99
7
A
TRP
3
-130.87
-98.37
7
A
GLU
5
59.59
18.98
7
A
ASP
6
42.22
28.06
7
A
GLU
8
-177.83
35.86
7
A
VAL
9
-117.49
60.39
7
A
CYS
12
-48.40
156.62
7
A
ALA
14
-70.17
-96.31
7
A
PHE
19
-36.14
121.97
7
A
SER
20
-120.60
-144.07
7
A
GLN
30
-84.59
-84.65
7
A
VAL
55
-170.12
130.60
7
A
CYS
56
-57.95
170.51
8
A
TRP
3
63.60
147.46
8
A
ALA
4
-66.18
62.08
8
A
GLU
8
-166.77
29.90
8
A
ASN
11
-170.47
128.01
8
A
ALA
14
-83.51
-86.24
8
A
PHE
19
-39.09
154.01
8
A
LYS
50
-98.46
45.76
9
A
LYS
2
171.50
-23.17
9
A
TRP
3
-124.49
-70.77
9
A
GLU
5
43.51
29.51
9
A
ASP
6
53.66
-94.68
9
A
VAL
9
-69.97
75.79
9
A
GLN
10
-75.72
46.47
9
A
ASN
11
-171.26
117.83
9
A
ALA
14
-80.05
-80.52
9
A
PHE
19
-37.93
159.27
9
A
SER
20
-159.44
-142.76
9
A
GLN
30
-80.94
-77.15
9
A
ALA
41
-81.40
36.94
9
A
SER
49
-155.97
-145.79
9
A
LYS
50
-145.84
49.95
10
A
LYS
2
66.34
-69.82
10
A
GLU
5
-117.19
70.92
10
A
GLU
8
-169.87
28.33
10
A
ALA
14
-126.20
-86.39
10
A
PHE
19
-35.19
151.63
10
A
SER
20
-164.17
-148.99
10
A
GLN
30
-85.46
-82.72
11
A
LYS
2
-154.73
-74.68
11
A
GLU
5
-160.85
-46.98
11
A
ASP
6
59.71
106.67
11
A
ASN
7
82.40
11.50
11
A
GLN
10
-91.86
55.81
11
A
CYS
12
-46.28
155.76
11
A
ALA
14
-86.90
-72.93
11
A
PHE
19
-39.02
157.48
11
A
SER
20
-159.61
-144.56
11
A
GLN
30
-82.99
-85.69
12
A
LYS
2
61.29
165.91
12
A
TRP
3
49.63
-177.65
12
A
ALA
4
-88.47
37.30
12
A
GLU
5
-45.24
-85.20
12
A
ASP
6
-175.79
25.49
12
A
GLN
10
-148.87
37.77
12
A
ALA
14
-80.09
-80.01
12
A
PHE
19
-34.84
147.96
12
A
SER
20
-160.13
-161.82
12
A
HIS
26
-161.62
110.74
12
A
ALA
41
-74.50
49.54
12
A
LYS
50
47.17
26.29
12
A
CYS
56
-56.76
172.03
13
A
LYS
2
-152.89
-64.63
13
A
TRP
3
-127.54
-140.97
13
A
ASP
6
-173.65
-34.94
13
A
GLN
10
-174.88
31.02
13
A
ASN
11
-171.50
119.77
13
A
ALA
14
-80.17
-89.35
13
A
PHE
19
-38.94
157.76
13
A
SER
20
-170.57
-170.86
13
A
ALA
41
-83.58
46.33
13
A
SER
49
-73.01
-137.65
13
A
LYS
50
-147.43
27.01
13
A
LYS
51
-170.06
-179.39
13
A
CYS
56
-45.43
152.91
14
A
GLU
5
-96.32
-89.01
14
A
GLN
10
-142.72
16.16
14
A
ALA
14
-79.32
-80.21
14
A
PHE
19
-36.04
154.01
14
A
SER
20
-153.23
-143.03
14
A
GLN
30
-91.18
-83.24
14
A
ALA
41
-83.07
35.86
14
A
SER
49
-146.12
10.53
14
A
LYS
50
43.61
70.15
15
A
TRP
3
-63.01
-101.46
15
A
GLU
5
70.05
-56.65
15
A
ASP
6
77.88
-19.17
15
A
GLN
10
-98.12
34.50
15
A
ALA
14
-70.83
-73.77
15
A
PHE
19
-42.61
165.06
15
A
SER
20
-156.40
-152.13
15
A
GLN
30
-84.58
-93.94
15
A
LYS
50
-103.15
49.66
16
A
LYS
2
-175.23
37.77
16
A
TRP
3
-165.97
-72.07
16
A
GLU
5
41.55
27.92
16
A
ASP
6
46.14
-92.64
16
A
ASN
7
-162.05
23.32
16
A
GLN
10
55.96
18.00
16
A
ALA
14
-77.31
-78.24
16
A
SER
20
-142.68
-150.41
16
A
GLN
30
-81.22
-71.04
16
A
ALA
37
-47.97
-19.69
16
A
LYS
50
-66.09
61.67
17
A
LYS
2
-169.75
-130.21
17
A
TRP
3
56.29
-143.08
17
A
ASP
6
-87.81
39.92
17
A
ASN
7
-130.04
-31.57
17
A
GLN
10
-86.50
45.61
17
A
CYS
12
-45.69
156.20
17
A
ALA
14
-89.23
-76.48
17
A
SER
20
-145.20
-141.41
18
A
TRP
3
-69.58
-126.05
18
A
ALA
4
-74.90
44.68
18
A
GLU
5
43.95
90.94
18
A
ASN
7
-132.39
-41.06
18
A
ALA
14
-73.30
-74.94
18
A
PHE
19
-45.12
156.84
18
A
SER
20
-167.38
-160.76
18
A
SER
49
-89.99
-140.53
18
A
LYS
50
-143.84
40.97
19
A
TRP
3
-162.29
-164.86
19
A
GLU
5
-66.11
62.98
19
A
ASP
6
-79.77
34.17
19
A
ASN
7
40.92
26.21
19
A
GLU
8
-140.60
12.42
19
A
GLN
10
-83.97
33.49
19
A
ALA
14
-74.74
-91.17
19
A
PHE
19
-40.87
158.94
19
A
SER
20
-153.31
-153.61
19
A
GLN
30
-91.93
-65.13
19
A
SER
49
-149.30
28.50
19
A
LYS
50
43.04
28.13
20
A
LYS
2
-67.87
-71.70
20
A
ASP
6
-158.07
36.48
20
A
VAL
9
-96.59
52.57
20
A
GLN
10
-78.73
49.01
20
A
ASN
11
-170.54
121.19
20
A
ALA
14
-79.57
-88.31
20
A
ALA
41
-83.54
35.90
20
A
LYS
50
-65.78
68.34
20
A
CYS
56
-57.60
-175.67
SOLUTION STRUCTURE OF THE EEA1 FYVE DOMAIN COMPLEXED WITH INOSITOL 1,3-BISPHOSPHATE
1
N
N
2
N
N
2
N
N
3
N
N
A
CYS
56
A
CYS
56
HELX_P
A
GLN
64
A
GLN
64
1
1
9
metalc
2.382
A
CYS
12
A
SG
CYS
12
1_555
A
ZN
66
B
ZN
ZN
1_555
metalc
2.539
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
66
B
ZN
ZN
1_555
metalc
2.836
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
67
C
ZN
ZN
1_555
metalc
2.879
A
CYS
31
A
SG
CYS
31
1_555
A
ZN
67
C
ZN
ZN
1_555
metalc
2.370
A
CYS
36
A
SG
CYS
36
1_555
A
ZN
66
B
ZN
ZN
1_555
metalc
2.383
A
CYS
39
A
SG
CYS
39
1_555
A
ZN
66
B
ZN
ZN
1_555
metalc
2.886
A
CYS
56
A
SG
CYS
56
1_555
A
ZN
67
C
ZN
ZN
1_555
metalc
2.666
A
CYS
59
A
SG
CYS
59
1_555
A
ZN
67
C
ZN
ZN
1_555
ENDOCYTOSIS/EXOCYTOSIS
beta sheet, alpha helix, zinc cluster, PtdIns(3)P, ENDOCYTOSIS-EXOCYTOSIS COMPLEX
EEA1_HUMAN
UNP
1
1346
Q15075
RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQG
1346
1410
1HYI
1
65
Q15075
A
1
1
65
2
2
anti-parallel
anti-parallel
A
ARG
25
A
ARG
25
A
HIS
27
A
HIS
27
A
ILE
34
A
ILE
34
A
CYS
36
A
CYS
36
A
LYS
42
A
LYS
42
A
THR
46
A
THR
46
A
LYS
51
A
LYS
51
A
VAL
55
A
VAL
55
BINDING SITE FOR RESIDUE ZN A 66
A
ZN
66
Software
4
BINDING SITE FOR RESIDUE ZN A 67
A
ZN
67
Software
4
BINDING SITE FOR RESIDUE ITP A 68
A
ITP
68
Software
5
A
CYS
12
A
CYS
12
4
1_555
A
CYS
15
A
CYS
15
4
1_555
A
CYS
36
A
CYS
36
4
1_555
A
CYS
39
A
CYS
39
4
1_555
A
CYS
28
A
CYS
28
4
1_555
A
CYS
31
A
CYS
31
4
1_555
A
CYS
56
A
CYS
56
4
1_555
A
CYS
59
A
CYS
59
4
1_555
A
ARG
25
A
ARG
25
5
1_555
A
HIS
26
A
HIS
26
5
1_555
A
HIS
27
A
HIS
27
5
1_555
A
ARG
29
A
ARG
29
5
1_555
A
ARG
54
A
ARG
54
5
1_555
1
P 1