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3.866
-1.637
-4.302
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4.882
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-3.393
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0.99
4.279
-2.570
-2.086
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3.515
-1.537
-1.397
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3.433
-3.777
-2.265
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4.285
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-2.343
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2.669
-3.702
-0.946
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2.398
-2.167
-0.769
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1.192
-1.759
-1.414
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0.099
-2.389
-1.310
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-0.984
-1.874
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-0.477
-0.671
-2.307
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-1.059
0.413
-2.971
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0.67
-2.356
0.479
-3.267
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-0.248
1.429
-3.321
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1.058
1.380
-3.039
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1.710
0.402
-2.417
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0.875
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-3.181
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-3.853
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1.753
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3.390
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0.316
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1.287
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-2.972
-0.279
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1.655
2.237
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3.254
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-3.805
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4.212
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-1.278
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1.16
5.444
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-1.422
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2.889
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-1.417
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1.425
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1.418
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6.173
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2.810
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7.505
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2.778
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3.587
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4.175
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-2.406
3.088
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1.995
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3.107
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0.23
0.779
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3.498
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0.800
-1.872
3.782
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-0.229
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4.255
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0.16
-1.402
-1.301
4.489
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0.226
0.284
4.409
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1.510
0.717
4.136
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0.24
1.765
2.005
4.368
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2.479
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3.685
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2.059
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3.534
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6.333
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0.276
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5.472
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1.762
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6.250
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0.810
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6.212
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3.214
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4.697
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2
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5.694
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4.038
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2.314
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2
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2.358
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2.783
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0.16
-0.445
0.949
4.762
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1.032
2.610
4.710
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0.27
2.691
2.373
4.204
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8.063
-2.127
3.891
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3
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1.22
9.379
-1.629
3.435
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3
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1.44
7.941
-2.768
5.219
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3
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3.827
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3
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0.147
2.890
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6.989
1.513
3.540
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3
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5.670
1.639
4.135
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1.746
4.653
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3
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8.373
3.141
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7.241
1.374
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3
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5.753
1.491
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3
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4.972
0.295
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0.27
5.234
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5.955
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0.32
4.261
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6.256
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3
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0.27
3.230
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6.558
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0.34
1.882
-1.206
6.961
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3
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1.282
-2.287
7.084
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1.203
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7.165
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3
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0.33
1.732
1.253
7.001
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3
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0.921
2.281
7.238
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2.979
1.481
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3.669
0.345
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6.459
0.029
2.085
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0.095
2.471
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2.284
2.779
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1.113
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0.340
6.252
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2.055
6.744
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5.306
2.384
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3
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6.221
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3
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0.251
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3
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-0.032
2.114
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3
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1.258
3.226
7.128
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8.240
4.177
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4
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5.363
5.540
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4
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8.437
3.437
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6.683
4.611
5.728
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4
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6.172
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6.314
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4
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5.643
5.575
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4
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4.826
4.366
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4
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6.710
5.497
8.691
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4
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7.114
6.813
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4
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5.932
4.651
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4
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4.653
4.014
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4
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4.441
2.511
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4
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0.22
3.115
2.051
9.510
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4
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0.24
2.180
2.848
9.626
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4
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1
4
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2.893
0.693
9.567
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1
4
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0.22
3.922
-0.169
9.446
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1
4
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0.23
3.707
-1.473
9.469
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4
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1
4
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0.24
5.250
0.287
9.271
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4
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1
4
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0.25
5.459
1.610
9.228
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4
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1
4
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0.43
5.357
6.196
5.693
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4
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4
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6.963
6.572
6.350
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4
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1
4
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5.118
6.347
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4
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7.547
5.079
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6.567
3.884
10.355
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4
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1
4
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5.540
5.403
10.580
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4
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3.715
4.525
9.477
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4
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2.769
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4
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4.480
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6.079
-0.428
9.133
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4
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1
4
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1
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0.27
6.441
1.949
9.180
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4
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1
4
1.00
1
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0.54
7.450
7.126
10.758
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5
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1
5
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1
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1.32
8.867
7.551
10.820
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5
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1
5
1.00
1
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1.45
7.020
5.986
11.593
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5
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1
5
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0.61
6.553
8.412
11.145
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1
5
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0.67
6.414
8.790
12.530
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1
5
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0.61
5.157
8.166
13.130
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1
5
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0.48
4.872
6.920
12.416
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1
5
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5.332
7.842
14.618
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1
5
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0.66
4.168
8.157
15.420
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1
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5.598
6.343
14.560
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1
5
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0.45
4.757
5.932
13.414
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1
5
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4.899
4.566
13.064
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0.38
5.879
3.687
13.223
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0.34
5.575
2.433
13.029
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5
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0.22
4.205
2.536
12.752
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1
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0.20
3.221
1.557
12.495
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5
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1
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0.31
3.367
0.349
12.373
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5
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1
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0.14
1.957
2.143
12.346
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1
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0.15
1.697
3.499
12.432
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1
5
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0.24
0.427
3.943
12.427
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5
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1
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0.22
2.625
4.383
12.617
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1
5
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0.23
3.827
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12.781
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5
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1
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0.75
6.349
9.876
12.606
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1
5
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7.288
8.443
13.084
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1
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4.360
8.863
13.046
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5
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6.159
8.410
14.971
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5
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6.644
6.186
14.368
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5
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1
5
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0.56
5.280
5.759
15.415
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5
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3.762
5.981
13.711
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5
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6.741
3.978
13.785
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1
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0.20
1.198
1.508
12.155
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5
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0.265
4.933
12.541
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1
5
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3.698
7.249
16.692
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6
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1
6
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1
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0.93
3.267
8.168
17.770
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6
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1
6
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O
1.81
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6.227
16.976
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6
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1
6
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0.53
2.397
6.509
16.130
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6
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1.762
7.066
14.998
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6
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1
6
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0.44
0.452
6.414
14.626
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6
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1
6
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0.36
0.904
5.178
14.577
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6
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1
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-0.650
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15.677
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6
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1
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0.44
-2.000
6.483
15.095
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6
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1
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O
0.36
-0.610
5.171
16.311
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6
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1
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0.31
0.094
4.380
15.270
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6
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1
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1
C
0.30
0.915
3.436
15.789
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6
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1
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1
N
0.26
0.630
2.106
15.885
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6
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1
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1
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0.20
-0.468
1.669
15.568
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6
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1
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1
O
0.32
1.636
1.318
16.331
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6
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1
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1
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0.39
2.818
1.884
16.641
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6
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1
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1
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0.46
3.801
1.096
17.076
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6
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1
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0.42
2.986
3.326
16.491
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6
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1
6
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1
C
0.38
2.022
3.977
16.083
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6
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1
6
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1
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0.49
2.432
6.997
14.149
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6
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1
6
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1
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0.59
1.571
8.121
15.198
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6
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1
6
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1
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0.43
0.112
6.522
13.712
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6
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1
6
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0.52
-0.405
7.225
16.381
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6
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1
6
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0.40
-0.098
5.208
17.283
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6
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1
6
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1
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0.32
-1.614
4.753
16.429
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6
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1
6
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1
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0.27
-0.496
4.076
14.569
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6
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DC
1
6
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1
H
0.47
3.645
0.103
17.173
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H41
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6
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H41
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1
6
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1
H
0.51
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17.315
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H42
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6
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H42
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1
6
1.00
1
H
0.48
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H5
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6
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H5
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1
6
1.00
1
H
0.43
2.101
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15.889
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6
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H6
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1
6
1.00
1
H
0.57
-3.363
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15.595
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P
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7
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P
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1
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1
P
1.29
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14.452
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7
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1
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1.00
1
O
1.76
-3.788
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16.862
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7
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1
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1
O
0.79
-2.963
4.172
15.925
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7
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DC
1
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1
O
1.02
-4.008
3.172
16.050
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7
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DC
1
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1
C
0.79
-4.345
2.823
17.514
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7
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DC
1
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1
C
0.67
-3.281
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18.126
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7
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DC
1
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O
0.72
-4.528
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18.354
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7
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DC
1
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C
0.90
-5.928
4.447
18.435
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7
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1
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1
O
0.49
-4.035
3.572
19.782
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7
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1
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0.45
-3.297
2.229
19.558
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7
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1
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1
C
0.45
-1.934
2.312
20.138
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7
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1
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1.00
1
N
0.49
-1.592
1.405
21.136
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7
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1
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1.00
1
C
0.48
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0.593
21.547
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7
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1
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1.00
1
O
0.59
-0.337
1.468
21.659
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7
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1
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1
N
0.63
0.544
2.381
21.228
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7
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1
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1.00
1
C
0.75
1.779
2.382
21.720
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7
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1
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1
N
0.56
0.188
3.321
20.213
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7
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1
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1
C
0.49
-1.052
3.246
19.706
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7
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1
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1
C
1.24
-3.690
2.265
15.537
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7
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1
7
1.00
1
H
1.19
-4.910
3.550
15.567
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7
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1
7
1.00
1
H
0.85
-5.290
2.238
17.555
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7
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1
7
1.00
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0.77
-3.922
4.977
17.846
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7
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1
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1.00
1
H
0.46
-3.339
4.301
20.299
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7
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DC
1
7
1.00
1
H
0.52
-4.936
3.352
20.426
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7
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1
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1
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0.43
-3.832
1.351
20.038
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7
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DC
1
7
1.00
1
H
0.83
2.034
1.724
22.442
A
H41
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7
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H41
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1
7
1.00
1
H
0.78
2.460
3.043
21.375
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H42
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7
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H42
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1
7
1.00
1
H
0.60
0.894
4.080
19.865
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7
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1
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1.00
1
H
0.50
-1.367
3.959
18.971
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7
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H6
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1
7
1.00
1
H
0.95
-6.620
4.976
19.815
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P
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8
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P
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1
8
1.00
1
P
1.51
-8.064
5.167
19.552
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8
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DT
1
8
1.00
1
O
1.81
-5.817
6.111
20.323
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8
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1
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1.00
1
O
0.74
-6.462
3.748
20.865
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8
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DT
1
8
1.00
1
O
1.03
-7.454
2.717
20.928
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8
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DT
1
8
1.00
1
C
0.81
-7.826
2.293
22.363
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8
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DT
1
8
1.00
1
C
0.74
-6.729
1.609
23.041
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8
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DT
1
8
1.00
1
O
1.26
-8.249
3.477
23.234
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8
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DT
1
8
1.00
1
C
1.66
-9.580
3.280
23.725
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8
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DT
1
8
1.00
1
O
1.33
-7.261
3.524
24.394
A
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DT
8
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C2'
DT
1
8
1.00
1
C
1.03
-6.395
2.260
24.305
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8
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C1'
DT
1
8
1.00
1
C
0.90
-4.919
2.526
24.358
A
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8
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DT
1
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1.00
1
N
0.93
-4.134
1.451
24.747
A
C2
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8
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A
C2
DT
1
8
1.00
1
C
1.10
-4.627
0.390
25.128
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O2
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8
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O2
DT
1
8
1.00
1
O
0.83
-2.769
1.625
24.693
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8
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A
N3
DT
1
8
1.00
1
N
0.67
-2.098
2.759
24.285
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C4
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8
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C4
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1
8
1.00
1
C
0.62
-0.868
2.782
24.291
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8
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A
O4
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1
8
1.00
1
O
0.68
-2.948
3.862
23.884
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8
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A
C5
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1
8
1.00
1
C
0.63
-2.206
5.110
23.284
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C7
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8
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C7
DT
1
8
1.00
1
C
0.80
-4.353
3.723
23.950
A
C6
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8
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1
8
1.00
1
C
1.65
-7.081
1.843
20.394
A
H5'
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8
ATOM
A
H5'
DT
1
8
1.00
1
H
1.75
-8.356
3.071
20.428
A
H5''
DT
8
ATOM
A
H5''
DT
1
8
1.00
1
H
0.84
-8.670
1.608
22.277
A
H4'
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8
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A
H4'
DT
1
8
1.00
1
H
1.43
-8.205
4.410
22.656
A
H3'
DT
8
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H3'
DT
1
8
1.00
1
H
2.08
-9.766
3.991
24.342
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8
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HO3'
DT
1
8
1.00
1
H
1.38
-6.652
4.416
24.320
A
H2'
DT
8
ATOM
A
H2'
DT
1
8
1.00
1
H
1.65
-7.805
3.529
25.339
A
H2''
DT
8
ATOM
A
H2''
DT
1
8
1.00
1
H
1.28
-6.650
1.583
25.156
A
H1'
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8
ATOM
A
H1'
DT
1
8
1.00
1
H
0.92
-2.203
0.842
24.977
A
H3
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8
ATOM
A
H3
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1
8
1.00
1
H
1.17
-2.463
6.017
23.824
A
H71
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8
ATOM
A
H71
DT
1
8
1.00
1
H
1.05
-2.450
5.231
22.226
A
H72
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8
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H72
DT
1
8
1.00
1
H
1.35
-1.111
4.958
23.362
A
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8
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1
8
1.00
1
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0.91
-5.039
4.574
23.788
A
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8
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1
8
1.00
1
H
1.86
0.115
-3.878
28.139
B
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9
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DA
1
1
1.00
1
O
1.46
0.328
-4.982
27.255
B
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9
ATOM
B
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DA
1
1
1.00
1
C
1.07
1.030
-4.544
25.975
B
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9
ATOM
B
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DA
1
1
1.00
1
C
1.21
0.259
-3.556
25.233
B
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9
ATOM
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DA
1
1
1.00
1
O
0.75
2.402
-4.025
26.215
B
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9
ATOM
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DA
1
1
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1
C
0.71
3.314
-5.140
26.359
B
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9
ATOM
B
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DA
1
1
1.00
1
O
0.64
2.585
-3.286
24.891
B
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9
ATOM
B
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DA
1
1
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1
C
1.04
1.180
-2.639
24.646
B
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9
ATOM
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DA
1
1
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1
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1.05
1.067
-1.373
25.292
B
N9
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9
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N9
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1
1
1.00
1
N
1.91
1.949
-0.468
25.210
B
C8
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9
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C8
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1
1
1.00
1
C
1.91
1.709
0.702
25.705
B
N7
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9
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B
N7
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1
1
1.00
1
N
0.83
0.412
0.499
26.200
B
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9
ATOM
B
C5
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1
1
1.00
1
C
0.65
-0.503
1.321
26.863
B
C6
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9
ATOM
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C6
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1
1
1.00
1
C
0.72
-0.260
2.599
27.154
B
N6
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9
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B
N6
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1
1
1.00
1
N
1.50
-1.689
0.778
27.198
B
N1
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9
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B
N1
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1
1
1.00
1
N
1.94
-1.959
-0.497
26.899
B
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9
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C2
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1
1
1.00
1
C
1.39
-1.164
-1.361
26.272
B
N3
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9
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B
N3
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1
1
1.00
1
N
0.61
0.012
-0.790
25.949
B
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9
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1
1
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1
C
1.78
-0.636
-5.422
26.998
B
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9
ATOM
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1
1
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H
1.56
0.939
-5.731
27.759
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9
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1
1
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1
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1.00
1.198
-5.362
25.328
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9
ATOM
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DA
1
1
1.00
1
H
0.90
2.402
-3.364
27.150
B
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9
ATOM
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DA
1
1
1.00
1
H
0.73
3.480
-2.572
24.915
B
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9
ATOM
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1
1
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H
0.46
2.719
-4.066
24.087
B
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9
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1
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H
1.23
0.976
-2.474
23.547
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9
ATOM
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DA
1
1
1.00
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H
2.64
2.829
-0.740
24.690
B
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9
ATOM
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H8
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1
1
1.00
1
H
0.74
-0.957
3.149
27.634
B
H61
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9
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B
H61
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1
1
1.00
1
H
1.37
0.622
3.017
26.892
B
H62
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9
ATOM
B
H62
DA
1
1
1.00
1
H
2.89
-2.936
-0.871
27.205
B
H2
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9
ATOM
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H2
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1
1
1.00
1
H
2.08
-0.256
-3.161
27.617
B
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9
ATOM
B
HO5'
DA
1
1
1.00
1
H
0.59
4.568
-5.390
25.360
B
P
DG
10
ATOM
B
P
DG
1
2
1.00
1
P
1.62
5.038
-6.781
25.551
B
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10
ATOM
B
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DG
1
2
1.00
1
O
1.10
5.517
-4.266
25.524
B
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10
ATOM
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1
2
1.00
1
O
0.65
3.906
-5.276
23.887
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10
ATOM
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DG
1
2
1.00
1
O
0.66
3.441
-6.423
23.148
B
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10
ATOM
B
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DG
1
2
1.00
1
C
0.51
2.040
-6.173
22.571
B
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10
ATOM
B
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DG
1
2
1.00
1
C
0.48
1.768
-4.764
22.518
B
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10
ATOM
B
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DG
1
2
1.00
1
O
0.51
1.868
-6.757
21.198
B
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10
ATOM
B
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DG
1
2
1.00
1
C
0.58
0.967
-7.888
21.234
B
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10
ATOM
B
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DG
1
2
1.00
1
O
0.45
1.359
-5.611
20.352
B
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10
ATOM
B
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DG
1
2
1.00
1
C
0.43
1.079
-4.474
21.310
B
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DG
10
ATOM
B
C1'
DG
1
2
1.00
1
C
0.42
1.480
-3.188
20.776
B
N9
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10
ATOM
B
N9
DG
1
2
1.00
1
N
0.49
2.683
-2.669
20.777
B
C8
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10
ATOM
B
C8
DG
1
2
1.00
1
C
0.50
2.843
-1.476
20.313
B
N7
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10
ATOM
B
N7
DG
1
2
1.00
1
N
0.42
1.534
-1.155
19.949
B
C5
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10
ATOM
B
C5
DG
1
2
1.00
1
C
0.43
1.012
0.028
19.373
B
C6
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10
ATOM
B
C6
DG
1
2
1.00
1
C
0.47
1.608
1.065
19.095
B
O6
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10
ATOM
B
O6
DG
1
2
1.00
1
O
0.44
-0.360
-0.071
19.167
B
N1
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10
ATOM
B
N1
DG
1
2
1.00
1
N
0.44
-1.135
-1.172
19.483
B
C2
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10
ATOM
B
C2
DG
1
2
1.00
1
C
0.52
-2.438
-1.077
19.214
B
N2
DG
10
ATOM
B
N2
DG
1
2
1.00
1
N
0.40
-0.647
-2.288
20.027
B
N3
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10
ATOM
B
N3
DG
1
2
1.00
1
N
0.39
0.685
-2.212
20.231
B
C4
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10
ATOM
B
C4
DG
1
2
1.00
1
C
0.76
3.411
-7.293
23.805
B
H5'
DG
10
ATOM
B
H5'
DG
1
2
1.00
1
H
0.75
4.134
-6.616
22.330
B
H5''
DG
10
ATOM
B
H5''
DG
1
2
1.00
1
H
0.53
1.317
-6.644
23.175
B
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DG
10
ATOM
B
H4'
DG
1
2
1.00
1
H
0.59
2.810
-7.069
20.848
B
H3'
DG
10
ATOM
B
H3'
DG
1
2
1.00
1
H
0.46
2.119
-5.316
19.629
B
H2'
DG
10
ATOM
B
H2'
DG
1
2
1.00
1
H
0.52
0.447
-5.892
19.844
B
H2''
DG
10
ATOM
B
H2''
DG
1
2
1.00
1
H
0.51
0.059
-4.438
21.524
B
H1'
DG
10
ATOM
B
H1'
DG
1
2
1.00
1
H
0.57
3.479
-3.242
21.187
B
H8
DG
10
ATOM
B
H8
DG
1
2
1.00
1
H
0.48
-0.805
0.731
18.746
B
H1
DG
10
ATOM
B
H1
DG
1
2
1.00
1
H
0.56
-2.807
-0.232
18.804
B
H21
DG
10
ATOM
B
H21
DG
1
2
1.00
1
H
0.56
-3.051
-1.855
19.412
B
H22
DG
10
ATOM
B
H22
DG
1
2
1.00
1
H
0.68
-0.131
-8.182
20.085
B
P
DG
11
ATOM
B
P
DG
1
3
1.00
1
P
1.49
-1.064
-9.214
20.590
B
OP1
DG
11
ATOM
B
OP1
DG
1
3
1.00
1
O
1.49
0.585
-8.400
18.807
B
OP2
DG
11
ATOM
B
OP2
DG
1
3
1.00
1
O
0.66
-0.925
-6.790
19.979
B
O5'
DG
11
ATOM
B
O5'
DG
1
3
1.00
1
O
0.62
-1.954
-6.466
20.908
B
C5'
DG
11
ATOM
B
C5'
DG
1
3
1.00
1
C
0.53
-3.246
-6.087
20.195
B
C4'
DG
11
ATOM
B
C4'
DG
1
3
1.00
1
C
0.59
-3.110
-4.843
19.457
B
O4'
DG
11
ATOM
B
O4'
DG
1
3
1.00
1
O
0.40
-3.636
-7.136
19.188
B
C3'
DG
11
ATOM
B
C3'
DG
1
3
1.00
1
C
0.36
-5.080
-7.253
19.219
B
O3'
DG
11
ATOM
B
O3'
DG
1
3
1.00
1
O
0.39
-3.081
-6.637
17.847
B
C2'
DG
11
ATOM
B
C2'
DG
1
3
1.00
1
C
0.48
-2.881
-5.117
18.040
B
C1'
DG
11
ATOM
B
C1'
DG
1
3
1.00
1
C
0.49
-1.510
-4.635
17.670
B
N9
DG
11
ATOM
B
N9
DG
1
3
1.00
1
N
0.53
-0.256
-5.188
17.819
B
C8
DG
11
ATOM
B
C8
DG
1
3
1.00
1
C
0.55
0.763
-4.425
17.557
B
N7
DG
11
ATOM
B
N7
DG
1
3
1.00
1
N
0.53
0.146
-3.224
17.185
B
C5
DG
11
ATOM
B
C5
DG
1
3
1.00
1
C
0.55
0.716
-1.969
16.780
B
C6
DG
11
ATOM
B
C6
DG
1
3
1.00
1
C
0.60
1.911
-1.628
16.722
B
O6
DG
11
ATOM
B
O6
DG
1
3
1.00
1
O
0.53
-0.277
-1.041
16.490
B
N1
DG
11
ATOM
B
N1
DG
1
3
1.00
1
N
0.49
-1.637
-1.267
16.579
B
C2
DG
11
ATOM
B
C2
DG
1
3
1.00
1
C
0.49
-2.433
-0.248
16.262
B
N2
DG
11
ATOM
B
N2
DG
1
3
1.00
1
N
0.48
-2.170
-2.424
16.959
B
N3
DG
11
ATOM
B
N3
DG
1
3
1.00
1
N
0.50
-1.236
-3.354
17.246
B
C4
DG
11
ATOM
B
C4
DG
1
3
1.00
1
C
0.72
-1.629
-5.629
21.525
B
H5'
DG
11
ATOM
B
H5'
DG
1
3
1.00
1
H
0.61
-2.141
-7.328
21.549
B
H5''
DG
11
ATOM
B
H5''
DG
1
3
1.00
1
H
0.55
-4.041
-5.994
20.936
B
H4'
DG
11
ATOM
B
H4'
DG
1
3
1.00
1
H
0.41
-3.190
-8.082
19.477
B
H3'
DG
11
ATOM
B
H3'
DG
1
3
1.00
1
H
0.41
-2.110
-7.083
17.609
B
H2'
DG
11
ATOM
B
H2'
DG
1
3
1.00
1
H
0.33
-3.800
-6.888
17.052
B
H2''
DG
11
ATOM
B
H2''
DG
1
3
1.00
1
H
0.47
-3.618
-4.553
17.434
B
H1'
DG
11
ATOM
B
H1'
DG
1
3
1.00
1
H
0.54
-0.102
-6.230
18.147
B
H8
DG
11
ATOM
B
H8
DG
1
3
1.00
1
H
0.54
0.047
-0.133
16.197
B
H1
DG
11
ATOM
B
H1
DG
1
3
1.00
1
H
0.50
-2.031
0.632
15.972
B
H21
DG
11
ATOM
B
H21
DG
1
3
1.00
1
H
0.48
-3.436
-0.355
16.308
B
H22
DG
11
ATOM
B
H22
DG
1
3
1.00
1
H
0.32
-6.033
-7.073
17.928
B
P
DC
12
ATOM
B
P
DC
1
4
1.00
1
P
1.29
-7.358
-7.652
18.246
B
OP1
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12
ATOM
B
OP1
DC
1
4
1.00
1
O
1.33
-5.304
-7.516
16.718
B
OP2
DC
12
ATOM
B
OP2
DC
1
4
1.00
1
O
0.39
-6.178
-5.467
17.887
B
O5'
DC
12
ATOM
B
O5'
DC
1
4
1.00
1
O
0.42
-7.223
-4.809
17.162
B
C5'
DC
12
ATOM
B
C5'
DC
1
4
1.00
1
C
0.36
-6.737
-4.369
15.785
B
C4'
DC
12
ATOM
B
C4'
DC
1
4
1.00
1
C
0.35
-5.345
-3.925
15.831
B
O4'
DC
12
ATOM
B
O4'
DC
1
4
1.00
1
O
0.31
-6.885
-5.410
14.799
B
C3'
DC
12
ATOM
B
C3'
DC
1
4
1.00
1
C
0.34
-8.220
-5.452
14.218
B
O3'
DC
12
ATOM
B
O3'
DC
1
4
1.00
1
O
0.26
-5.795
-4.873
13.727
B
C2'
DC
12
ATOM
B
C2'
DC
1
4
1.00
1
C
0.29
-4.875
-3.837
14.492
B
C1'
DC
12
ATOM
B
C1'
DC
1
4
1.00
1
C
0.28
-3.371
-4.054
14.375
B
N1
DC
12
ATOM
B
N1
DC
1
4
1.00
1
N
0.31
-2.557
-2.913
14.243
B
C2
DC
12
ATOM
B
C2
DC
1
4
1.00
1
C
0.33
-3.039
-1.779
14.070
B
O2
DC
12
ATOM
B
O2
DC
1
4
1.00
1
O
0.35
-1.208
-3.092
14.264
B
N3
DC
12
ATOM
B
N3
DC
1
4
1.00
1
N
0.35
-0.651
-4.294
14.396
B
C4
DC
12
ATOM
B
C4
DC
1
4
1.00
1
C
0.41
0.673
-4.410
14.439
B
N4
DC
12
ATOM
B
N4
DC
1
4
1.00
1
N
0.31
-1.447
-5.447
14.512
B
C5
DC
12
ATOM
B
C5
DC
1
4
1.00
1
C
0.28
-2.785
-5.286
14.491
B
C6
DC
12
ATOM
B
C6
DC
1
4
1.00
1
C
0.50
-7.540
-3.929
17.723
B
H5'
DC
12
ATOM
B
H5'
DC
1
4
1.00
1
H
0.44
-8.071
-5.485
17.049
B
H5''
DC
12
ATOM
B
H5''
DC
1
4
1.00
1
H
0.38
-7.306
-3.648
15.415
B
H4'
DC
12
ATOM
B
H4'
DC
1
4
1.00
1
H
0.31
-6.739
-6.331
15.376
B
H3'
DC
12
ATOM
B
H3'
DC
1
4
1.00
1
H
0.23
-5.200
-5.687
13.213
B
H2'
DC
12
ATOM
B
H2'
DC
1
4
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0.27
-6.363
-4.273
12.955
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12
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1
4
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1
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0.31
-5.081
-2.785
14.162
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12
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DC
1
4
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1
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0.74
1.255
-3.588
14.359
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12
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1
4
1.00
1
H
1.16
1.098
-5.320
14.553
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12
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1
4
1.00
1
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0.33
-0.985
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14.632
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12
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1
4
1.00
1
H
0.29
-3.382
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14.503
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12
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1
4
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1
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0.33
-8.498
-5.684
12.629
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13
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1
5
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1
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1.34
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12.500
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13
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1
5
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1
O
1.28
-7.246
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11.867
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13
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5
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0.38
-9.524
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12.210
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13
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5
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O
0.40
-9.777
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10.817
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13
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5
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0.38
-8.861
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10.278
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13
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1
5
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0.33
-7.588
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11.033
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13
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5
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O
0.39
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8.800
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13
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5
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0.41
-8.549
-2.216
8.008
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13
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5
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O
0.34
-7.142
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8.900
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13
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5
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0.31
-6.572
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10.048
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13
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1
5
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0.26
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-3.696
10.400
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13
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1
5
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1
N
0.27
-4.621
-4.867
10.269
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13
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1
5
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1
C
0.29
-3.336
-4.886
10.433
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13
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1
5
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1
N
0.28
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10.664
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13
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1
5
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1
C
0.35
-1.828
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10.874
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13
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1
5
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1
C
0.43
-0.738
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11.019
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13
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1
5
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1
O
0.33
-1.975
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11.001
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13
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1
5
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1
N
0.26
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10.946
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13
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1
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1
C
0.27
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11.026
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13
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1
5
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1
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0.24
-4.371
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10.786
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13
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1
5
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-4.218
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10.641
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13
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1
5
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0.45
-10.816
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10.680
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13
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5
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-5.214
10.266
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5
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0.41
-9.380
-2.265
10.356
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5
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0.42
-9.274
-4.104
8.418
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13
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5
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-7.244
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9.103
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5
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-6.487
-3.875
8.058
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5
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-6.438
-2.328
9.737
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13
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5
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-5.129
-5.661
9.765
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13
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1
5
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0.47
-1.139
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10.811
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13
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1
5
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1
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0.27
-4.098
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10.980
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13
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1
5
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1
H
0.41
-7.514
-1.957
6.774
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14
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P
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1
6
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1
P
1.23
-8.268
-1.316
5.674
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14
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1
6
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1
O
1.46
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6.507
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14
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6
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O
0.36
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-0.870
7.379
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14
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6
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O
0.90
-6.941
-0.107
8.487
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14
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DC
1
6
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C
0.62
-5.983
0.979
8.920
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14
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DC
1
6
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C
0.38
-4.905
0.227
8.986
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14
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1
6
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O
0.73
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7.912
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14
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DC
1
6
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C
0.66
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3.365
8.560
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14
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DC
1
6
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1
O
0.68
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7.298
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14
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DC
1
6
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C
0.40
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8.334
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14
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C1'
DC
1
6
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1
C
0.49
-3.193
-0.209
7.820
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N1
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14
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N1
DC
1
6
1.00
1
N
0.70
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-0.285
7.791
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C2
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14
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C2
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1
6
1.00
1
C
0.85
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8.184
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O2
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14
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O2
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1
6
1.00
1
O
0.77
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7.343
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N3
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14
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N3
DC
1
6
1.00
1
N
0.61
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6.970
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C4
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14
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C4
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1
6
1.00
1
C
0.68
-1.639
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6.535
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N4
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14
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N4
DC
1
6
1.00
1
N
0.43
-3.592
-2.217
7.054
B
C5
DC
14
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B
C5
DC
1
6
1.00
1
C
0.41
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-1.125
7.468
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C6
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14
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C6
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1
6
1.00
1
C
1.41
-7.107
-0.771
9.329
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H5'
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14
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H5'
DC
1
6
1.00
1
H
1.47
-7.892
0.361
8.230
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14
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DC
1
6
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1
H
0.65
-6.026
1.311
9.840
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14
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DC
1
6
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H
0.98
-6.487
2.074
7.189
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14
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DC
1
6
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1
H
0.84
-4.603
1.271
6.312
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14
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DC
1
6
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H
0.79
-3.792
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7.218
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14
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DC
1
6
1.00
1
H
0.38
-3.479
1.299
9.054
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14
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H1'
DC
1
6
1.00
1
H
0.86
-0.636
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6.490
B
H41
DC
14
ATOM
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H41
DC
1
6
1.00
1
H
0.58
-2.247
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6.253
B
H42
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14
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H42
DC
1
6
1.00
1
H
0.43
-4.328
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6.871
B
H5
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14
ATOM
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H5
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1
6
1.00
1
H
0.44
-5.085
-0.919
7.628
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H6
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14
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H6
DC
1
6
1.00
1
H
0.86
-4.268
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8.154
B
P
DC
15
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P
DC
1
7
1.00
1
P
1.35
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9.367
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OP1
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15
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OP1
DC
1
7
1.00
1
O
1.96
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OP2
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15
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OP2
DC
1
7
1.00
1
O
0.84
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7.758
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O5'
DC
15
ATOM
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O5'
DC
1
7
1.00
1
O
0.90
-1.656
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7.655
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C5'
DC
15
ATOM
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C5'
DC
1
7
1.00
1
C
0.78
-1.281
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6.202
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C4'
DC
15
ATOM
B
C4'
DC
1
7
1.00
1
C
0.77
-0.800
3.613
5.474
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O4'
DC
15
ATOM
B
O4'
DC
1
7
1.00
1
O
0.70
-2.478
5.345
5.453
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C3'
DC
15
ATOM
B
C3'
DC
1
7
1.00
1
C
0.73
-2.457
6.787
5.554
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O3'
DC
15
ATOM
B
O3'
DC
1
7
1.00
1
O
0.63
-2.160
4.859
3.959
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C2'
DC
15
ATOM
B
C2'
DC
1
7
1.00
1
C
0.67
-1.035
3.795
4.062
B
C1'
DC
15
ATOM
B
C1'
DC
1
7
1.00
1
C
0.67
-1.469
2.539
3.410
B
N1
DC
15
ATOM
B
N1
DC
1
7
1.00
1
N
0.66
-0.710
2.054
2.350
B
C2
DC
15
ATOM
B
C2
DC
1
7
1.00
1
C
0.65
0.233
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1.907
B
O2
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15
ATOM
B
O2
DC
1
7
1.00
1
O
0.68
-1.077
0.870
1.790
B
N3
DC
15
ATOM
B
N3
DC
1
7
1.00
1
N
0.71
-2.144
0.197
2.239
B
C4
DC
15
ATOM
B
C4
DC
1
7
1.00
1
C
0.73
-2.453
-0.976
1.692
B
N4
DC
15
ATOM
B
N4
DC
1
7
1.00
1
N
0.72
-2.932
0.707
3.316
B
C5
DC
15
ATOM
B
C5
DC
1
7
1.00
1
C
0.70
-2.556
1.872
3.861
B
C6
DC
15
ATOM
B
C6
DC
1
7
1.00
1
C
1.00
-0.860
3.814
8.084
B
H5'
DC
15
ATOM
B
H5'
DC
1
7
1.00
1
H
0.94
-1.738
5.346
8.229
B
H5''
DC
15
ATOM
B
H5''
DC
1
7
1.00
1
H
0.81
-0.481
5.553
6.195
B
H4'
DC
15
ATOM
B
H4'
DC
1
7
1.00
1
H
0.70
-3.480
4.948
5.950
B
H3'
DC
15
ATOM
B
H3'
DC
1
7
1.00
1
H
0.62
-3.058
4.392
3.442
B
H2'
DC
15
ATOM
B
H2'
DC
1
7
1.00
1
H
0.64
-1.751
5.720
3.357
B
H2''
DC
15
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B
H2''
DC
1
7
1.00
1
H
0.66
-0.070
4.129
3.574
B
H1'
DC
15
ATOM
B
H1'
DC
1
7
1.00
1
H
0.73
-1.899
-1.338
0.930
B
H41
DC
15
ATOM
B
H41
DC
1
7
1.00
1
H
0.76
-3.240
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2.040
B
H42
DC
15
ATOM
B
H42
DC
1
7
1.00
1
H
0.75
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3.684
B
H5
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15
ATOM
B
H5
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1
7
1.00
1
H
0.71
-3.141
2.302
4.649
B
H6
DC
15
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B
H6
DC
1
7
1.00
1
H
0.72
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7.773
4.323
B
P
DT
16
ATOM
B
P
DT
1
8
1.00
1
P
0.97
-2.815
9.159
4.843
B
OP1
DT
16
ATOM
B
OP1
DT
1
8
1.00
1
O
1.86
-4.025
7.247
3.656
B
OP2
DT
16
ATOM
B
OP2
DT
1
8
1.00
1
O
0.69
-1.581
7.637
3.291
B
O5'
DT
16
ATOM
B
O5'
DT
1
8
1.00
1
O
0.86
-1.716
8.238
1.996
B
C5'
DT
16
ATOM
B
C5'
DT
1
8
1.00
1
C
0.52
-0.434
8.199
1.163
B
C4'
DT
16
ATOM
B
C4'
DT
1
8
1.00
1
C
0.59
0.004
6.829
0.955
B
O4'
DT
16
ATOM
B
O4'
DT
1
8
1.00
1
O
0.98
-0.723
8.792
-0.220
B
C3'
DT
16
ATOM
B
C3'
DT
1
8
1.00
1
C
1.39
0.332
9.671
-0.625
B
O3'
DT
16
ATOM
B
O3'
DT
1
8
1.00
1
O
1.05
-0.827
7.608
-1.153
B
C2'
DT
16
ATOM
B
C2'
DT
1
8
1.00
1
C
0.81
-0.153
6.449
-0.443
B
C1'
DT
16
ATOM
B
C1'
DT
1
8
1.00
1
C
0.67
-0.919
5.174
-0.567
B
N1
DT
16
ATOM
B
N1
DT
1
8
1.00
1
N
0.74
-0.179
4.061
-0.938
B
C2
DT
16
ATOM
B
C2
DT
1
8
1.00
1
C
0.94
0.997
4.149
-1.287
B
O2
DT
16
ATOM
B
O2
DT
1
8
1.00
1
O
0.62
-0.825
2.847
-0.904
B
N3
DT
16
ATOM
B
N3
DT
1
8
1.00
1
N
0.42
-2.131
2.621
-0.527
B
C4
DT
16
ATOM
B
C4
DT
1
8
1.00
1
C
0.36
-2.587
1.479
-0.538
B
O4
DT
16
ATOM
B
O4
DT
1
8
1.00
1
O
0.40
-2.873
3.806
-0.143
B
C5
DT
16
ATOM
B
C5
DT
1
8
1.00
1
C
0.39
-4.286
3.547
0.478
B
C7
DT
16
ATOM
B
C7
DT
1
8
1.00
1
C
0.53
-2.253
5.072
-0.199
B
C6
DT
16
ATOM
B
C6
DT
1
8
1.00
1
C
1.71
-2.016
9.279
2.123
B
H5'
DT
16
ATOM
B
H5'
DT
1
8
1.00
1
H
1.45
-2.500
7.713
1.450
B
H5''
DT
16
ATOM
B
H5''
DT
1
8
1.00
1
H
0.61
0.369
8.781
1.680
B
H4'
DT
16
ATOM
B
H4'
DT
1
8
1.00
1
H
1.22
-1.682
9.327
-0.211
B
H3'
DT
16
ATOM
B
H3'
DT
1
8
1.00
1
H
1.85
0.045
10.111
-1.429
B
HO3'
DT
16
ATOM
B
HO3'
DT
1
8
1.00
1
H
1.09
-1.874
7.376
-1.341
B
H2'
DT
16
ATOM
B
H2'
DT
1
8
1.00
1
H
1.37
-0.316
7.822
-2.092
B
H2''
DT
16
ATOM
B
H2''
DT
1
8
1.00
1
H
1.15
0.841
6.301
-0.885
B
H1'
DT
16
ATOM
B
H1'
DT
1
8
1.00
1
H
0.74
-0.287
2.041
-1.179
B
H3
DT
16
ATOM
B
H3
DT
1
8
1.00
1
H
1.08
-4.285
3.797
1.543
B
H71
DT
16
ATOM
B
H71
DT
1
8
1.00
1
H
1.01
-4.534
2.473
0.384
B
H72
DT
16
ATOM
B
H72
DT
1
8
1.00
1
H
1.14
-5.049
4.123
-0.033
B
H73
DT
16
ATOM
B
H73
DT
1
8
1.00
1
H
0.62
-2.833
6.022
-0.099
B
H6
DT
16
ATOM
B
H6
DT
1
8
1.00
1
H
0.33
-1.954
1.268
11.157
A
C1
TME
9
HETATM
C
C1
TME
2
1.00
1
C
0.36
-2.098
2.544
11.999
A
C2
TME
9
HETATM
C
C2
TME
2
1.00
1
C
0.31
-0.731
3.054
12.364
A
C3
TME
9
HETATM
C
C3
TME
2
1.00
1
C
0.38
-1.534
1.518
10.206
A
H11
TME
9
HETATM
C
H11
TME
2
1.00
1
H
0.30
-1.308
0.600
11.622
A
H12
TME
9
HETATM
C
H12
TME
2
1.00
1
H
0.35
-2.658
2.323
12.879
A
H21
TME
9
HETATM
C
H21
TME
2
1.00
1
H
0.48
-2.602
3.338
11.468
A
H22
TME
9
HETATM
C
H22
TME
2
1.00
1
H
0.94
-0.144
3.244
11.486
A
H31
TME
9
HETATM
C
H31
TME
2
1.00
1
H
0.73
-0.224
2.376
13.003
A
H32
TME
9
HETATM
C
H32
TME
2
1.00
1
H
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Dooley, P.A.
Tsarouhtsis, D.
Korbel, G.A.
Nechev, L.V.
Shearer, J.
Zegar, I.S.
Harris, C.M.
Stone, M.P.
Harris, T.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H8
44.096
PROPANE
non-polymer
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
123
1730
1739
10.1021/ja003163w
11456774
Structural studies of an oligodeoxynucleotide containing a trimethylene interstrand cross-link in a 5'-(CpG) motif: model of a malondialdehyde cross-link.
2001
10.2210/pdb1hz2/pdb
pdb_00001hz2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2427.605
DNA (5'-D(*AP*GP*GP*CP*GP*CP*CP*T)-3')
2
syn
polymer
44.096
PROPANE
1
syn
non-polymer
no
no
(DA)(DG)(DG)(DC)(DG)(DC)(DC)(DT)
AGGCGCCT
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
41.310
1
20
A
1
B
16
-16.842
A_DA1:DT16_B
1
12.341
0.279
-2.036
-1.667
-12.719
1
19
A
3
B
14
7.809
A_DG3:DC14_B
2
-23.644
-1.697
0.020
-0.639
-11.215
1
19
A
6
B
11
-7.016
A_DC6:DG11_B
3
-18.023
-1.567
-0.117
-0.392
-40.891
1
20
A
8
B
9
-24.121
A_DT8:DA9_B
4
13.720
-0.335
-2.100
-1.869
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-02-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2001-01-23
REL
REL
TME
PROPANE
1
2D NOESY
DQF-COSY
PE-COSY
2D NOESY
7.1
ambient
303
K
7.1
ambient
298
K
Further details about the structural refinement including the trimethylene chain can be found in the journal article
NOE-restrained molecular dynamics, simulated annealing
2 mM crosslinked duplex, 10 mM sodium phosphate buffer, 0.1 M NaCl, 50 mM EDTA, pH 7.1
99.99% D2O
2 mM crosslinked duplex, 10 mM sodium phosphate buffer, 0.1 M NaCl, 50 mM EDTA, pH 7.1
90% H2O/10% D2O
processing
Felix
95
Borgias, B. A.; James, T. l.
iterative matrix relaxation
MARDIGRAS
Brunger, A. T.
structure solution
X-PLOR
3.1
Dr. J. Zdunek
data analysis
CPANEL
Widmer, H.; Wuthrich, K.
data analysis
SPHINX/LINSHA
Brunger, A. T.
refinement
X-PLOR
3.1
500
Bruker
AMX
GPX
13
2
TME
TME
9
A
A
1
n
1
DA
1
A
G
2
n
2
DG
2
A
G
3
n
3
DG
3
A
C
4
n
4
DC
4
A
PX5
5
n
5
DG
5
A
C
6
n
6
DC
6
A
C
7
n
7
DC
7
A
T
8
n
8
DT
8
A
A
9
n
1
DA
9
B
G
10
n
2
DG
10
B
G
11
n
3
DG
11
B
C
12
n
4
DC
12
B
GPX
13
n
5
DG
13
B
C
14
n
6
DC
14
B
C
15
n
7
DC
15
B
T
16
n
8
DT
16
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
N2
H31
DG
TME
5
9
1.30
1
B
B
H2''
O5'
DC
DC
14
15
1.51
1
A
A
H2''
O5'
DC
DC
6
7
1.55
1
A
DG
3
0.048
SIDE CHAIN
1
B
DG
11
0.051
SIDE CHAIN
1
-3.78
0.50
103.90
100.12
A
A
A
C5
N7
C8
DA
DA
DA
1
1
1
N
1
5.80
0.50
113.80
119.60
A
A
A
N7
C8
N9
DA
DA
DA
1
1
1
N
1
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
-3.35
0.50
104.30
100.95
A
A
A
C5
N7
C8
DG
DG
DG
2
2
2
N
1
5.60
0.50
113.10
118.70
A
A
A
N7
C8
N9
DG
DG
DG
2
2
2
N
1
3.94
0.50
113.10
117.04
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
1
-3.09
0.40
106.40
103.31
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
1
4.31
0.60
106.00
110.31
A
A
A
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
1
3.96
0.30
108.30
112.26
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
11.22
0.30
108.30
119.52
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
-3.55
0.50
104.30
100.75
A
A
A
C5
N7
C8
DG
DG
DG
5
5
5
N
1
3.45
0.50
113.10
116.55
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
1
-3.64
0.60
126.00
122.36
A
A
A
N3
C4
N9
DG
DG
DG
5
5
5
N
1
-12.60
1.90
109.30
96.70
A
A
A
C5'
C4'
O4'
DC
DC
DC
6
6
6
N
1
5.35
0.40
120.30
125.65
A
A
A
C6
N1
C2
DC
DC
DC
6
6
6
N
1
-12.08
1.20
120.80
108.72
A
A
A
C6
N1
C1'
DC
DC
DC
6
6
6
N
1
6.66
1.10
118.80
125.46
A
A
A
C2
N1
C1'
DC
DC
DC
6
6
6
N
1
10.58
1.20
119.70
130.28
A
A
A
C3'
O3'
P
DC
DC
DC
6
6
7
Y
1
4.33
0.30
108.30
112.63
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
-3.78
0.50
103.90
100.12
B
B
B
C5
N7
C8
DA
DA
DA
9
9
9
N
1
5.71
0.50
113.80
119.51
B
B
B
N7
C8
N9
DA
DA
DA
9
9
9
N
1
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
-3.34
0.50
104.30
100.96
B
B
B
C5
N7
C8
DG
DG
DG
10
10
10
N
1
5.58
0.50
113.10
118.68
B
B
B
N7
C8
N9
DG
DG
DG
10
10
10
N
1
4.02
0.50
113.10
117.12
B
B
B
N7
C8
N9
DG
DG
DG
11
11
11
N
1
-3.37
0.40
106.40
103.03
B
B
B
C8
N9
C4
DG
DG
DG
11
11
11
N
1
3.79
0.60
106.00
109.79
B
B
B
O4'
C4'
C3'
DC
DC
DC
12
12
12
N
1
4.64
0.30
108.30
112.94
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
12.58
0.30
108.30
120.88
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
4.17
0.50
113.10
117.27
B
B
B
N7
C8
N9
DG
DG
DG
13
13
13
N
1
-12.24
1.90
109.30
97.06
B
B
B
C5'
C4'
O4'
DC
DC
DC
14
14
14
N
1
5.24
0.40
120.30
125.54
B
B
B
C6
N1
C2
DC
DC
DC
14
14
14
N
1
-2.46
0.40
121.90
119.44
B
B
B
N3
C4
C5
DC
DC
DC
14
14
14
N
1
-11.76
1.20
120.80
109.04
B
B
B
C6
N1
C1'
DC
DC
DC
14
14
14
N
1
10.67
1.20
119.70
130.37
B
B
B
C3'
O3'
P
DC
DC
DC
14
14
15
Y
1
3.52
0.30
108.30
111.82
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
2.66
0.30
108.30
110.96
B
B
B
O4'
C1'
N1
DT
DT
DT
16
16
16
N
1
-3.77
0.60
123.70
119.93
B
B
B
C5
C6
N1
DT
DT
DT
16
16
16
N
1
A
A
C8
N9
DA
DA
1
1
-0.107
0.008
1.373
1.266
N
1
A
A
C8
N9
DG
DG
2
2
-0.064
0.007
1.374
1.310
N
1
A
A
C4'
C3'
DC
DC
4
4
-0.080
0.010
1.521
1.441
N
1
A
A
C3'
C2'
DC
DC
4
4
0.100
0.012
1.518
1.618
N
1
A
A
C2'
C1'
DC
DC
4
4
0.068
0.010
1.519
1.587
N
1
A
A
C8
N9
DG
DG
5
5
-0.048
0.007
1.374
1.326
N
1
A
A
N9
C4
DG
DG
5
5
-0.050
0.008
1.375
1.325
N
1
A
A
O4'
C1'
DC
DC
6
6
-0.086
0.012
1.418
1.332
N
1
A
A
O4'
C4'
DC
DC
6
6
-0.129
0.010
1.446
1.317
N
1
A
A
C1'
N1
DC
DC
6
6
-0.114
0.014
1.468
1.354
N
1
A
A
N1
C6
DC
DC
6
6
-0.100
0.006
1.367
1.267
N
1
A
A
C5
C6
DC
DC
6
6
-0.106
0.008
1.339
1.233
N
1
A
A
C3'
C2'
DC
DC
7
7
0.077
0.012
1.518
1.595
N
1
A
A
C5
C6
DT
DT
8
8
0.074
0.007
1.339
1.413
N
1
A
A
C5
C7
DT
DT
8
8
0.075
0.006
1.496
1.571
N
1
B
B
C8
N9
DA
DA
9
9
-0.107
0.008
1.373
1.266
N
1
B
B
C8
N9
DG
DG
10
10
-0.064
0.007
1.374
1.310
N
1
B
B
C4'
C3'
DC
DC
12
12
-0.080
0.010
1.521
1.441
N
1
B
B
C3'
C2'
DC
DC
12
12
0.102
0.012
1.518
1.620
N
1
B
B
C2'
C1'
DC
DC
12
12
0.064
0.010
1.519
1.583
N
1
B
B
C8
N9
DG
DG
13
13
-0.046
0.007
1.374
1.328
N
1
B
B
O4'
C1'
DC
DC
14
14
-0.086
0.012
1.418
1.332
N
1
B
B
O4'
C4'
DC
DC
14
14
-0.130
0.010
1.446
1.316
N
1
B
B
C1'
N1
DC
DC
14
14
-0.115
0.014
1.468
1.353
N
1
B
B
N1
C6
DC
DC
14
14
-0.105
0.006
1.367
1.262
N
1
B
B
C5
C6
DC
DC
14
14
-0.106
0.008
1.339
1.233
N
1
B
B
C3'
C2'
DC
DC
15
15
0.085
0.012
1.518
1.603
N
1
B
B
C5
C6
DT
DT
16
16
0.072
0.007
1.339
1.411
N
1
B
B
C5
C7
DT
DT
16
16
0.069
0.006
1.496
1.565
N
SOLUTION NMR STRUCTURE OF SELF-COMPLEMENTARY DUPLEX 5'-D(AGGCG*CCT)2 CONTAINING A TRIMETHYLENE CROSSLINK AT THE N2 POSITION OF G*. MODEL OF A MALONDIALDEHYDE CROSSLINK
1
N
N
1
N
N
2
N
N
covale
1.461
none
A
DG
5
A
N2
DG
5
1_555
A
TME
9
C
C3
TME
1_555
covale
1.474
none
A
TME
9
C
C1
TME
1_555
B
DG
13
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N1
DA
1
1_555
B
DT
16
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N6
DA
1
1_555
B
DT
16
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
14
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
14
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
14
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
11
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
11
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
11
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
9
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
9
B
N6
DA
1
1_555
DNA
DNA duplex, interstrand crosslink, DNA
1HZ2
PDB
1
1HZ2
1
8
1HZ2
1
8
1HZ2
A
1
1
8
9
16
1HZ2
9
16
1HZ2
B
1
1
8
BINDING SITE FOR RESIDUE TME A 9
A
TME
9
Software
4
A
DG
5
A
DG
5
4
1_555
A
DC
6
A
DC
6
4
1_555
B
DG
13
B
DG
5
4
1_555
B
DC
14
B
DC
6
4
1_555
1
P 1