0.014006
0.008086
0.000000
0.000000
0.016172
0.000000
0.000000
0.000000
0.016168
0.00000
0.00000
0.00000
Durbecq, V.
Sainz, G.
Oudjama, Y.
Clantin, B.
Bompard-Gilles, C.
Tricot, C.
Caillet, J.
Stalon, V.
Droogmans, L.
Villeret, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
71.400
71.400
61.850
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
20
1530
1537
10.1093/emboj/20.7.1530
11285217
Crystal structure of isopentenyl diphosphate:dimethylallyl diphosphate isomerase.
2001
10.2210/pdb1hzt/pdb
pdb_00001hzt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
1
CCD
2000-01-01
MARRESEARCH
CCD
2000-01-01
ADSC QUANTUM 4
MAD
M
x-ray
1
0.97858
1.0
0.97873
1.0
0.93260
1.0
BM14
ESRF
0.97858, 0.97873
SYNCHROTRON
ESRF BEAMLINE BM14
ID14-2
ESRF
0.93260
SYNCHROTRON
ESRF BEAMLINE ID14-2
21602.385
ISOPENTENYL DIPHOSPHATE DELTA-ISOMERASE
5.3.3.2
1
man
polymer
18.015
water
165
nat
water
DIMETHYLALLYL DIPHOSPHATE ISOMERASE
no
no
MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAV
IRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
WMVMQATNREARKRLSAFTQLKLEHHHHHH
MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAV
IRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
WMVMQATNREARKRLSAFTQLKLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
IDI
562
Escherichia coli
511693
Escherichia coli BL21
BL21
PET30B
PLASMID
PYL20
1
2.11
41.59
VAPOR DIFFUSION, HANGING DROP
5.5
PEG2000 monomethylether, Tris, maleate, ammonium sulfate, glycerol, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
2001-07-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
1HX3 contains metal-bound isopentenyl diphosphate delta-isomerase
RCSB
Y
PDBJ
2001-01-26
REL
HOH
water
TIP
1
2
HOH
HOH
191
A
TIP
2
2
HOH
HOH
192
A
TIP
3
2
HOH
HOH
193
A
TIP
4
2
HOH
HOH
194
A
TIP
5
2
HOH
HOH
195
A
TIP
6
2
HOH
HOH
196
A
TIP
7
2
HOH
HOH
197
A
TIP
8
2
HOH
HOH
198
A
TIP
9
2
HOH
HOH
199
A
TIP
10
2
HOH
HOH
200
A
TIP
11
2
HOH
HOH
201
A
TIP
12
2
HOH
HOH
202
A
TIP
13
2
HOH
HOH
203
A
TIP
14
2
HOH
HOH
204
A
TIP
15
2
HOH
HOH
205
A
TIP
16
2
HOH
HOH
206
A
TIP
17
2
HOH
HOH
207
A
TIP
18
2
HOH
HOH
208
A
TIP
19
2
HOH
HOH
209
A
TIP
20
2
HOH
HOH
210
A
TIP
21
2
HOH
HOH
211
A
TIP
22
2
HOH
HOH
212
A
TIP
23
2
HOH
HOH
213
A
TIP
24
2
HOH
HOH
214
A
TIP
25
2
HOH
HOH
215
A
TIP
26
2
HOH
HOH
216
A
TIP
27
2
HOH
HOH
217
A
TIP
28
2
HOH
HOH
218
A
TIP
29
2
HOH
HOH
219
A
TIP
30
2
HOH
HOH
220
A
TIP
31
2
HOH
HOH
221
A
TIP
32
2
HOH
HOH
222
A
TIP
33
2
HOH
HOH
223
A
TIP
34
2
HOH
HOH
224
A
TIP
35
2
HOH
HOH
225
A
TIP
36
2
HOH
HOH
226
A
TIP
37
2
HOH
HOH
227
A
TIP
38
2
HOH
HOH
228
A
TIP
39
2
HOH
HOH
229
A
TIP
40
2
HOH
HOH
230
A
TIP
41
2
HOH
HOH
231
A
TIP
42
2
HOH
HOH
232
A
TIP
43
2
HOH
HOH
233
A
TIP
44
2
HOH
HOH
234
A
TIP
45
2
HOH
HOH
235
A
TIP
47
2
HOH
HOH
236
A
TIP
48
2
HOH
HOH
237
A
TIP
49
2
HOH
HOH
238
A
TIP
50
2
HOH
HOH
239
A
TIP
51
2
HOH
HOH
240
A
TIP
52
2
HOH
HOH
241
A
TIP
53
2
HOH
HOH
242
A
TIP
54
2
HOH
HOH
243
A
TIP
55
2
HOH
HOH
244
A
TIP
56
2
HOH
HOH
245
A
TIP
57
2
HOH
HOH
246
A
TIP
58
2
HOH
HOH
247
A
TIP
59
2
HOH
HOH
248
A
TIP
60
2
HOH
HOH
249
A
TIP
61
2
HOH
HOH
250
A
TIP
62
2
HOH
HOH
251
A
TIP
63
2
HOH
HOH
252
A
TIP
64
2
HOH
HOH
253
A
TIP
65
2
HOH
HOH
254
A
TIP
66
2
HOH
HOH
255
A
TIP
67
2
HOH
HOH
256
A
TIP
68
2
HOH
HOH
257
A
TIP
69
2
HOH
HOH
258
A
TIP
70
2
HOH
HOH
259
A
TIP
71
2
HOH
HOH
260
A
TIP
72
2
HOH
HOH
261
A
TIP
73
2
HOH
HOH
262
A
TIP
74
2
HOH
HOH
263
A
TIP
75
2
HOH
HOH
264
A
TIP
76
2
HOH
HOH
265
A
TIP
77
2
HOH
HOH
266
A
TIP
78
2
HOH
HOH
267
A
TIP
79
2
HOH
HOH
268
A
TIP
80
2
HOH
HOH
269
A
TIP
81
2
HOH
HOH
270
A
TIP
82
2
HOH
HOH
271
A
TIP
83
2
HOH
HOH
272
A
TIP
84
2
HOH
HOH
273
A
TIP
85
2
HOH
HOH
274
A
TIP
86
2
HOH
HOH
275
A
TIP
87
2
HOH
HOH
276
A
TIP
88
2
HOH
HOH
277
A
TIP
89
2
HOH
HOH
278
A
TIP
90
2
HOH
HOH
279
A
TIP
91
2
HOH
HOH
280
A
TIP
92
2
HOH
HOH
281
A
TIP
93
2
HOH
HOH
282
A
TIP
94
2
HOH
HOH
283
A
TIP
95
2
HOH
HOH
284
A
TIP
96
2
HOH
HOH
285
A
TIP
97
2
HOH
HOH
286
A
TIP
99
2
HOH
HOH
287
A
TIP
100
2
HOH
HOH
288
A
TIP
101
2
HOH
HOH
289
A
TIP
102
2
HOH
HOH
290
A
TIP
103
2
HOH
HOH
291
A
TIP
104
2
HOH
HOH
292
A
TIP
105
2
HOH
HOH
293
A
TIP
106
2
HOH
HOH
294
A
TIP
108
2
HOH
HOH
295
A
TIP
109
2
HOH
HOH
296
A
TIP
110
2
HOH
HOH
297
A
TIP
111
2
HOH
HOH
298
A
TIP
112
2
HOH
HOH
299
A
TIP
113
2
HOH
HOH
300
A
TIP
114
2
HOH
HOH
301
A
TIP
115
2
HOH
HOH
302
A
TIP
116
2
HOH
HOH
303
A
TIP
117
2
HOH
HOH
304
A
TIP
118
2
HOH
HOH
305
A
TIP
119
2
HOH
HOH
306
A
TIP
120
2
HOH
HOH
307
A
TIP
121
2
HOH
HOH
308
A
TIP
123
2
HOH
HOH
309
A
TIP
124
2
HOH
HOH
310
A
TIP
125
2
HOH
HOH
311
A
TIP
126
2
HOH
HOH
312
A
TIP
127
2
HOH
HOH
313
A
TIP
128
2
HOH
HOH
314
A
TIP
129
2
HOH
HOH
315
A
TIP
130
2
HOH
HOH
316
A
TIP
131
2
HOH
HOH
317
A
TIP
132
2
HOH
HOH
318
A
TIP
133
2
HOH
HOH
319
A
TIP
134
2
HOH
HOH
320
A
TIP
135
2
HOH
HOH
321
A
TIP
136
2
HOH
HOH
322
A
TIP
137
2
HOH
HOH
323
A
TIP
138
2
HOH
HOH
324
A
TIP
139
2
HOH
HOH
325
A
TIP
140
2
HOH
HOH
326
A
TIP
141
2
HOH
HOH
327
A
TIP
142
2
HOH
HOH
328
A
TIP
143
2
HOH
HOH
329
A
TIP
144
2
HOH
HOH
330
A
TIP
145
2
HOH
HOH
331
A
TIP
146
2
HOH
HOH
332
A
TIP
147
2
HOH
HOH
333
A
TIP
148
2
HOH
HOH
334
A
TIP
149
2
HOH
HOH
335
A
TIP
150
2
HOH
HOH
336
A
TIP
151
2
HOH
HOH
337
A
TIP
152
2
HOH
HOH
338
A
TIP
153
2
HOH
HOH
339
A
TIP
154
2
HOH
HOH
340
A
TIP
155
2
HOH
HOH
341
A
TIP
156
2
HOH
HOH
342
A
TIP
157
2
HOH
HOH
343
A
TIP
158
2
HOH
HOH
344
A
TIP
160
2
HOH
HOH
345
A
TIP
161
2
HOH
HOH
346
A
TIP
162
2
HOH
HOH
347
A
TIP
164
2
HOH
HOH
348
A
TIP
165
2
HOH
HOH
349
A
TIP
166
2
HOH
HOH
350
A
TIP
167
2
HOH
HOH
351
A
TIP
168
2
HOH
HOH
352
A
TIP
169
2
HOH
HOH
353
A
TIP
170
2
HOH
HOH
354
A
TIP
171
2
HOH
HOH
355
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
LEU
31
n
31
LEU
31
A
HIS
32
n
32
HIS
32
A
LEU
33
n
33
LEU
33
A
ALA
34
n
34
ALA
34
A
PHE
35
n
35
PHE
35
A
SER
36
n
36
SER
36
A
SER
37
n
37
SER
37
A
TRP
38
n
38
TRP
38
A
LEU
39
n
39
LEU
39
A
PHE
40
n
40
PHE
40
A
ASN
41
n
41
ASN
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
GLY
44
n
44
GLY
44
A
GLN
45
n
45
GLN
45
A
LEU
46
n
46
LEU
46
A
LEU
47
n
47
LEU
47
A
VAL
48
n
48
VAL
48
A
THR
49
n
49
THR
49
A
ARG
50
n
50
ARG
50
A
ARG
51
n
51
ARG
51
A
ALA
52
n
52
ALA
52
A
LEU
53
n
53
LEU
53
A
SER
54
n
54
SER
54
A
LYS
55
n
55
LYS
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
TRP
58
n
58
TRP
58
A
PRO
59
n
59
PRO
59
A
GLY
60
n
60
GLY
60
A
VAL
61
n
61
VAL
61
A
TRP
62
n
62
TRP
62
A
THR
63
n
63
THR
63
A
ASN
64
n
64
ASN
64
A
SER
65
n
65
SER
65
A
VAL
66
n
66
VAL
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
PRO
70
n
70
PRO
70
A
GLN
71
n
71
GLN
71
A
LEU
72
n
72
LEU
72
A
GLY
73
n
73
GLY
73
A
GLU
74
n
74
GLU
74
A
SER
75
n
75
SER
75
A
ASN
76
n
76
ASN
76
A
GLU
77
n
77
GLU
77
A
ASP
78
n
78
ASP
78
A
ALA
79
n
79
ALA
79
A
VAL
80
n
80
VAL
80
A
ILE
81
n
81
ILE
81
A
ARG
82
n
82
ARG
82
A
ARG
83
n
83
ARG
83
A
CYS
84
n
84
CYS
84
A
ARG
85
n
85
ARG
85
A
TYR
86
n
86
TYR
86
A
GLU
87
n
87
GLU
87
A
LEU
88
n
88
LEU
88
A
GLY
89
n
89
GLY
89
A
VAL
90
n
90
VAL
90
A
GLU
91
n
91
GLU
91
A
ILE
92
n
92
ILE
92
A
THR
93
n
93
THR
93
A
PRO
94
n
94
PRO
94
A
PRO
95
n
95
PRO
95
A
GLU
96
n
96
GLU
96
A
SER
97
n
97
SER
97
A
ILE
98
n
98
ILE
98
A
TYR
99
n
99
TYR
99
A
PRO
100
n
100
PRO
100
A
ASP
101
n
101
ASP
101
A
PHE
102
n
102
PHE
102
A
ARG
103
n
103
ARG
103
A
TYR
104
n
104
TYR
104
A
ARG
105
n
105
ARG
105
A
ALA
106
n
106
ALA
106
A
THR
107
n
107
THR
107
A
ASP
108
n
108
ASP
108
A
PRO
109
n
109
PRO
109
A
SER
110
n
110
SER
110
A
GLY
111
n
111
GLY
111
A
ILE
112
n
112
ILE
112
A
VAL
113
n
113
VAL
113
A
GLU
114
n
114
GLU
114
A
ASN
115
n
115
ASN
115
A
GLU
116
n
116
GLU
116
A
VAL
117
n
117
VAL
117
A
CYS
118
n
118
CYS
118
A
PRO
119
n
119
PRO
119
A
VAL
120
n
120
VAL
120
A
PHE
121
n
121
PHE
121
A
ALA
122
n
122
ALA
122
A
ALA
123
n
123
ALA
123
A
ARG
124
n
124
ARG
124
A
THR
125
n
125
THR
125
A
THR
126
n
126
THR
126
A
SER
127
n
127
SER
127
A
ALA
128
n
128
ALA
128
A
LEU
129
n
129
LEU
129
A
GLN
130
n
130
GLN
130
A
ILE
131
n
131
ILE
131
A
ASN
132
n
132
ASN
132
A
ASP
133
n
133
ASP
133
A
ASP
134
n
134
ASP
134
A
GLU
135
n
135
GLU
135
A
VAL
136
n
136
VAL
136
A
MET
137
n
137
MET
137
A
ASP
138
n
138
ASP
138
A
TYR
139
n
139
TYR
139
A
GLN
140
n
140
GLN
140
A
TRP
141
n
141
TRP
141
A
CYS
142
n
142
CYS
142
A
ASP
143
n
143
ASP
143
A
LEU
144
n
144
LEU
144
A
ALA
145
n
145
ALA
145
A
ASP
146
n
146
ASP
146
A
VAL
147
n
147
VAL
147
A
LEU
148
n
148
LEU
148
A
HIS
149
n
149
HIS
149
A
GLY
150
n
150
GLY
150
A
ILE
151
n
151
ILE
151
A
ASP
152
n
152
ASP
152
A
ALA
153
n
153
ALA
153
A
THR
154
n
154
THR
154
A
PRO
155
n
155
PRO
155
A
TRP
156
n
156
TRP
156
A
ALA
157
n
157
ALA
157
A
PHE
158
n
158
PHE
158
A
SER
159
n
159
SER
159
A
PRO
160
n
160
PRO
160
A
TRP
161
n
161
TRP
161
A
MET
162
n
162
MET
162
A
VAL
163
n
163
VAL
163
A
MET
164
n
164
MET
164
A
GLN
165
n
165
GLN
165
A
ALA
166
n
166
ALA
166
A
THR
167
n
167
THR
167
A
ASN
168
n
168
ASN
168
A
ARG
169
n
169
ARG
169
A
GLU
170
n
170
GLU
170
A
ALA
171
n
171
ALA
171
A
ARG
172
n
172
ARG
172
A
LYS
173
n
173
LYS
173
A
ARG
174
n
174
ARG
174
A
LEU
175
n
175
LEU
175
A
SER
176
n
176
SER
176
A
ALA
177
n
177
ALA
177
A
PHE
178
n
178
PHE
178
A
THR
179
n
179
THR
179
A
GLN
180
n
180
GLN
180
A
LEU
181
n
181
LEU
181
A
LYS
182
n
182
LYS
182
A
LEU
183
n
183
LEU
183
A
n
184
184
A
n
185
185
A
n
186
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
32
A
N
HIS
32
A
O
ASN
115
A
O
ASN
115
A
N
GLU
116
A
N
GLU
116
A
O
TYR
104
A
O
TYR
104
A
O
GLY
68
A
O
GLY
68
A
N
PHE
35
A
N
PHE
35
A
O
SER
36
A
O
SER
36
A
N
PHE
121
A
N
PHE
121
A
O
ALA
122
A
O
ALA
122
A
N
GLU
96
A
N
GLU
96
A
N
THR
63
A
N
THR
63
A
O
THR
49
A
O
THR
49
A
O
ARG
50
A
O
ARG
50
A
N
MET
137
A
N
MET
137
1
A
C
LEU
31
A
C
LEU
31
0
Y
1
A
O
LEU
31
A
O
LEU
31
0
Y
1
A
CG
LEU
31
A
CG
LEU
31
0
Y
1
A
CD1
LEU
31
A
CD1
LEU
31
0
Y
1
A
CD2
LEU
31
A
CD2
LEU
31
0
Y
1
A
CB
HIS
32
A
CB
HIS
32
0
Y
1
A
CG
HIS
32
A
CG
HIS
32
0
Y
1
A
ND1
HIS
32
A
ND1
HIS
32
0
Y
1
A
CD2
HIS
32
A
CD2
HIS
32
0
Y
1
A
CE1
HIS
32
A
CE1
HIS
32
0
Y
1
A
NE2
HIS
32
A
NE2
HIS
32
0
Y
1
A
CD2
LEU
33
A
CD2
LEU
33
0
Y
1
A
CE
LYS
43
A
CE
LYS
43
0
Y
1
A
NZ
LYS
43
A
NZ
LYS
43
0
Y
1
A
NZ
LYS
55
A
NZ
LYS
55
0
Y
1
A
CB
LYS
56
A
CB
LYS
56
0
Y
1
A
CG
LYS
56
A
CG
LYS
56
0
Y
1
A
CD
LYS
56
A
CD
LYS
56
0
Y
1
A
CE
LYS
56
A
CE
LYS
56
0
Y
1
A
NZ
LYS
56
A
NZ
LYS
56
0
Y
1
A
CG
PRO
59
A
CG
PRO
59
0
Y
1
A
CG2
VAL
66
A
CG2
VAL
66
0
Y
1
A
CG
LEU
72
A
CG
LEU
72
0
Y
1
A
CD1
LEU
72
A
CD1
LEU
72
0
Y
1
A
CD2
LEU
72
A
CD2
LEU
72
0
Y
1
A
CG
GLU
77
A
CG
GLU
77
0
Y
1
A
CG
ARG
103
A
CG
ARG
103
0
Y
1
A
CD
ARG
103
A
CD
ARG
103
0
Y
1
A
CZ
ARG
103
A
CZ
ARG
103
0
Y
1
A
NH1
ARG
103
A
NH1
ARG
103
0
Y
1
A
NH2
ARG
103
A
NH2
ARG
103
0
Y
1
A
CB
TYR
104
A
CB
TYR
104
0
Y
1
A
CE2
TYR
104
A
CE2
TYR
104
0
Y
1
A
CZ
TYR
104
A
CZ
TYR
104
0
Y
1
A
OH
TYR
104
A
OH
TYR
104
0
Y
1
A
CG
ARG
105
A
CG
ARG
105
0
Y
1
A
CD
ARG
105
A
CD
ARG
105
0
Y
1
A
NE
ARG
105
A
NE
ARG
105
0
Y
1
A
CZ
ARG
105
A
CZ
ARG
105
0
Y
1
A
NH1
ARG
105
A
NH1
ARG
105
0
Y
1
A
NH2
ARG
105
A
NH2
ARG
105
0
Y
1
A
CB
ALA
106
A
CB
ALA
106
0
Y
1
A
CA
VAL
113
A
CA
VAL
113
0
Y
1
A
CB
VAL
113
A
CB
VAL
113
0
Y
1
A
CG1
VAL
113
A
CG1
VAL
113
0
Y
1
A
CG2
VAL
113
A
CG2
VAL
113
0
Y
1
A
CB
GLU
114
A
CB
GLU
114
0
Y
1
A
CG
GLU
114
A
CG
GLU
114
0
Y
1
A
CD
GLU
114
A
CD
GLU
114
0
Y
1
A
OE1
GLU
114
A
OE1
GLU
114
0
Y
1
A
OE2
GLU
114
A
OE2
GLU
114
0
Y
1
A
ND2
ASN
115
A
ND2
ASN
115
0
Y
1
A
CG
GLU
116
A
CG
GLU
116
0
Y
1
A
CD
GLU
116
A
CD
GLU
116
0
Y
1
A
OE1
GLU
116
A
OE1
GLU
116
0
Y
1
A
OE2
GLU
116
A
OE2
GLU
116
0
Y
1
A
CG1
VAL
117
A
CG1
VAL
117
0
Y
1
A
CG2
VAL
117
A
CG2
VAL
117
0
Y
1
A
CE
MET
164
A
CE
MET
164
0
Y
1
A
CD
ARG
169
A
CD
ARG
169
0
Y
1
A
NE
ARG
169
A
NE
ARG
169
0
Y
1
A
CZ
ARG
169
A
CZ
ARG
169
0
Y
1
A
NH1
ARG
169
A
NH1
ARG
169
0
Y
1
A
NH2
ARG
169
A
NH2
ARG
169
0
Y
1
A
OE2
GLU
170
A
OE2
GLU
170
0
Y
1
A
CE
LYS
173
A
CE
LYS
173
0
Y
1
A
NZ
LYS
173
A
NZ
LYS
173
0
Y
1
A
CD1
LEU
181
A
CD1
LEU
181
0
Y
1
A
CD2
LEU
181
A
CD2
LEU
181
0
Y
1
A
CE
LYS
182
A
CE
LYS
182
0
Y
1
A
NZ
LYS
182
A
NZ
LYS
182
0
Y
1
A
MET
1
A
MET
1
1
Y
1
A
GLN
2
A
GLN
2
1
Y
1
A
THR
3
A
THR
3
1
Y
1
A
GLU
4
A
GLU
4
1
Y
1
A
HIS
5
A
HIS
5
1
Y
1
A
VAL
6
A
VAL
6
1
Y
1
A
ILE
7
A
ILE
7
1
Y
1
A
LEU
8
A
LEU
8
1
Y
1
A
LEU
9
A
LEU
9
1
Y
1
A
ASN
10
A
ASN
10
1
Y
1
A
ALA
11
A
ALA
11
1
Y
1
A
GLN
12
A
GLN
12
1
Y
1
A
GLY
13
A
GLY
13
1
Y
1
A
VAL
14
A
VAL
14
1
Y
1
A
PRO
15
A
PRO
15
1
Y
1
A
THR
16
A
THR
16
1
Y
1
A
GLY
17
A
GLY
17
1
Y
1
A
THR
18
A
THR
18
1
Y
1
A
LEU
19
A
LEU
19
1
Y
1
A
GLU
20
A
GLU
20
1
Y
1
A
LYS
21
A
LYS
21
1
Y
1
A
TYR
22
A
TYR
22
1
Y
1
A
ALA
23
A
ALA
23
1
Y
1
A
ALA
24
A
ALA
24
1
Y
1
A
HIS
25
A
HIS
25
1
Y
1
A
THR
26
A
THR
26
1
Y
1
A
ALA
27
A
ALA
27
1
Y
1
A
ASP
28
A
ASP
28
1
Y
1
A
THR
29
A
THR
29
1
Y
1
A
ARG
30
A
ARG
30
1
Y
1
A
GLU
184
A
GLU
184
1
Y
1
A
HIS
185
A
HIS
185
1
Y
1
A
HIS
186
A
HIS
186
1
Y
1
A
HIS
187
A
HIS
187
1
Y
1
A
HIS
188
A
HIS
188
1
Y
1
A
HIS
189
A
HIS
189
1
Y
1
A
HIS
190
A
HIS
190
1
Y
1
A
LEU
72
-23.08
-63.79
1
A
TYR
99
-162.57
72.53
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
23.2
1.98
0.98
0.00
1.98
0.00
-3.96
0.2240000
0.006
0.1920000
0.1920000
1.45
23.37
1617
31943
5.1
97.9
RANDOM
1072282.73
0.00
1
RESTRAINED
THROUGHOUT
0.0
AB INITIO PHASING
FLAT MODEL
86.90
0.355
0.19
0.18
5.00
0.13
0.13
1.45
23.37
165
1388
0
0
1223
0.006
1.4
23.1
0.64
0.2670000
0.016
0.2690000
1.54
274
5001
6
5.2
97.6
20.1
1HZT
1
phasing
SOLVE
phasing
MLPHARE
model building
WARP
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
model building
ARP/wARP
CRYSTAL STRUCTURE OF METAL-FREE ISOPENTENYL DIPHOSPHATE:DIMETHYLALLYL DIPHOSPHATE ISOMERASE
1
N
N
2
N
N
A
SER
75
A
SER
75
HELX_P
A
GLY
89
A
GLY
89
1
1
15
A
ASP
143
A
ASP
143
HELX_P
A
THR
154
A
THR
154
1
2
12
A
PRO
155
A
PRO
155
HELX_P
A
ALA
157
A
ALA
157
5
3
3
A
SER
159
A
SER
159
HELX_P
A
ASN
168
A
ASN
168
1
4
10
A
ASN
168
A
ASN
168
HELX_P
A
PHE
178
A
PHE
178
1
5
11
ISOMERASE
isopentenyl, dimethylallyl, isoprenoids, isomerase
IDI_ECOLI
UNP
1
1
Q46822
MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAV
IRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
WMVMQATNREARKRLSAFTQLK
1
182
1HZT
1
182
Q46822
A
1
1
182
1
cloning artifact
LEU
183
1HZT
A
Q46822
UNP
183
1
cloning artifact
GLU
184
1HZT
A
Q46822
UNP
184
1
expression tag
HIS
185
1HZT
A
Q46822
UNP
185
1
expression tag
HIS
186
1HZT
A
Q46822
UNP
186
1
expression tag
HIS
187
1HZT
A
Q46822
UNP
187
1
expression tag
HIS
188
1HZT
A
Q46822
UNP
188
1
expression tag
HIS
189
1HZT
A
Q46822
UNP
189
1
expression tag
HIS
190
1HZT
A
Q46822
UNP
190
3
4
3
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
32
A
HIS
32
A
LEU
33
A
LEU
33
A
VAL
113
A
VAL
113
A
VAL
117
A
VAL
117
A
ARG
103
A
ARG
103
A
THR
107
A
THR
107
A
VAL
66
A
VAL
66
A
GLY
68
A
GLY
68
A
PHE
35
A
PHE
35
A
PHE
40
A
PHE
40
A
VAL
120
A
VAL
120
A
ARG
124
A
ARG
124
A
GLU
96
A
GLU
96
A
TYR
99
A
TYR
99
A
TRP
62
A
TRP
62
A
ASN
64
A
ASN
64
A
LEU
46
A
LEU
46
A
ARG
51
A
ARG
51
A
VAL
136
A
VAL
136
A
CYS
142
A
CYS
142
154
P 32 2 1