0.040290 -0.000000 0.000000 0.000000 0.022558 0.000000 0.000000 0.000000 0.022311 0.00000 0.00000 0.00000 Tereshko, V. Wilds, C.J. Minasov, G. Prakash, T.P. Maier, M.A. Howard, A. Wawrzak, Z. Manoharan, M. Egli, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90 90 90 24.82 44.33 44.82 Cs 1 132.905 CESIUM ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C12 H19 N2 O8 P 350.262 2'-O-METHYL-3'-METHYL-3'-DEOXY-ARABINOFURANOSYL-THYMINE-5'-PHOSPHATE non-polymer N 1 N CS N 2 N O N 3 N P N 4 N O N 5 N O N 6 N O N 7 N C N 8 R C N 9 N O N 10 S C N 11 N O N 12 N C N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 N C N 49 R C N 50 N N N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N C N 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C Y 84 N N Y 85 N C Y 86 N N Y 87 N C N 88 N C N 89 N O N 90 N N N 91 N C N 92 N N N 93 N N Y 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N P N 111 N O N 112 N O N 113 N O N 114 N C N 115 R C N 116 N O N 117 S C N 118 N O N 119 N C N 120 R C N 121 N N N 122 N C N 123 N O N 124 N N N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N P N 149 N O N 150 N O N 151 N O N 152 N O N 153 N N N 154 N C N 155 N C N 156 N O N 157 N N N 158 N C N 159 N O N 160 N C N 161 N C N 162 R C N 163 N O N 164 N C N 165 N C N 166 S C N 167 N O N 168 R C N 169 R C N 170 N C N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N doub N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 29 1208 1215 10.1093/nar/29.5.1208 11222771 Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments. 2001 10.2210/pdb1i0j/pdb pdb_00001i0j 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 CCD 1999-11-01 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.8151 1.0 17-ID APS 0.8151 SYNCHROTRON APS BEAMLINE 17-ID 3073.059 5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3' 2 syn polymer 132.905 CESIUM ION 3 syn non-polymer 18.015 water 92 nat water no yes (DG)(DC)(DG)(DT)(DA)(T23)(DA)(DC)(DG)(DC) GCGTAXACGC A,B polydeoxyribonucleotide n n n n n n n n n n 1 1.93 36.13 VAPOR DIFFUSION, HANGING DROP 6.0 Cs, pH 6.0, VAPOR DIFFUSION, HANGING DROP at 298 K 298 -1.700 1 19 A 1 B 20 0.302 A_DG1:DC20_B 1 -6.260 -0.309 0.200 -0.046 4.041 1 19 A 2 B 19 1.434 A_DC2:DG19_B 2 -9.408 0.064 0.198 -0.098 -7.148 1 19 A 3 B 18 1.267 A_DG3:DC18_B 3 -12.392 -0.375 0.071 -0.116 -3.954 1 20 A 4 B 17 -0.091 A_DT4:DA17_B 4 -13.758 -0.100 -0.090 -0.132 -3.598 1 20 A 5 B 16 -5.525 A_DA5:T2316_B 5 -12.325 0.242 0.162 -0.008 4.951 1 20 A 6 B 15 6.013 A_T236:DA15_B 6 -12.738 -0.202 0.326 -0.030 6.407 1 20 A 7 B 14 4.277 A_DA7:DT14_B 7 -12.232 0.096 0.125 -0.102 8.310 1 19 A 8 B 13 0.422 A_DC8:DG13_B 8 -14.852 0.122 -0.062 -0.127 -5.847 1 19 A 9 B 12 3.738 A_DG9:DC12_B 9 -10.523 -0.159 0.024 -0.117 -2.233 1 19 A 10 B 11 1.053 A_DC10:DG11_B 10 3.427 0.186 0.117 -0.077 3.181 38.867 A A 1 2 -0.696 B B 20 19 3.158 -0.463 0.385 -1.340 AA_DG1DC2:DG19DC20_BB 1 0.939 -1.411 38.854 -1.959 -0.468 2.798 26.085 A A 2 3 14.707 B B 19 18 3.418 6.564 0.451 -2.162 AA_DC2DG3:DC18DG19_BB 2 1.721 -3.857 25.202 -6.524 -0.545 2.951 38.105 A A 3 4 6.943 B B 18 17 3.112 4.523 -1.111 -1.424 AA_DG3DT4:DA17DC18_BB 3 -0.835 1.281 37.837 -2.714 1.603 1.520 33.969 A A 4 5 39.858 B B 17 16 3.185 21.572 0.596 -1.590 AA_DT4DA5:T2316DA17_BB 4 1.531 -2.828 26.354 -5.543 -0.819 2.881 32.755 A A 5 6 9.428 B B 16 15 3.112 5.294 0.932 -1.326 AA_DA5T236:DA15T2316_BB 5 0.612 -1.090 32.330 -3.193 -1.555 2.218 34.906 A A 6 7 24.200 B B 15 14 3.046 14.123 -0.222 -1.457 AA_T236DA7:DT14DA15_BB 6 0.978 -1.676 31.989 -4.232 0.495 3.071 32.168 A A 7 8 6.444 B B 14 13 3.244 3.562 0.222 -1.501 AA_DA7DC8:DG13DT14_BB 7 1.898 -3.435 31.921 -3.325 -0.072 2.551 31.401 A A 8 9 22.528 B B 13 12 3.490 11.899 -0.228 -1.877 AA_DC8DG9:DC12DG13_BB 8 -1.150 2.176 29.090 -5.614 0.213 3.197 35.233 A A 9 10 3.497 B B 12 11 3.306 2.116 0.058 -1.755 AA_DG9DC10:DG11DC12_BB 9 -0.762 1.260 35.164 -3.212 -0.208 chem_comp database_2 entity_poly pdbx_struct_conn_angle pdbx_struct_mod_residue struct_conn struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Polymer sequence Data collection 1 0 2001-04-04 1 1 2008-04-27 1 2 2011-07-13 2 0 2022-06-22 2 1 2024-02-07 _chem_comp.mon_nstd_flag _chem_comp.type _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity_poly.pdbx_seq_one_letter_code_can _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-01-29 REL REL CS CESIUM ION HOH water CS 21 2 CS CS 21 A CS 22 2 CS CS 22 A CS 23 2 CS CS 23 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 115 3 HOH HOH 115 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 144 3 HOH HOH 144 A HOH 145 3 HOH HOH 145 A HOH 146 3 HOH HOH 146 A HOH 147 3 HOH HOH 147 A HOH 150 3 HOH HOH 150 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 159 3 HOH HOH 159 A HOH 163 3 HOH HOH 163 A HOH 166 3 HOH HOH 166 A HOH 169 3 HOH HOH 169 A HOH 170 3 HOH HOH 170 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 183 3 HOH HOH 183 A HOH 184 3 HOH HOH 184 A HOH 185 3 HOH HOH 185 A HOH 186 3 HOH HOH 186 A HOH 191 3 HOH HOH 191 A HOH 194 3 HOH HOH 194 A HOH 24 3 HOH HOH 24 B HOH 104 3 HOH HOH 104 B HOH 105 3 HOH HOH 105 B HOH 108 3 HOH HOH 108 B HOH 114 3 HOH HOH 114 B HOH 116 3 HOH HOH 116 B HOH 117 3 HOH HOH 117 B HOH 120 3 HOH HOH 120 B HOH 121 3 HOH HOH 121 B HOH 125 3 HOH HOH 125 B HOH 128 3 HOH HOH 128 B HOH 132 3 HOH HOH 132 B HOH 135 3 HOH HOH 135 B HOH 136 3 HOH HOH 136 B HOH 137 3 HOH HOH 137 B HOH 140 3 HOH HOH 140 B HOH 141 3 HOH HOH 141 B HOH 142 3 HOH HOH 142 B HOH 143 3 HOH HOH 143 B HOH 148 3 HOH HOH 148 B HOH 149 3 HOH HOH 149 B HOH 151 3 HOH HOH 151 B HOH 154 3 HOH HOH 154 B HOH 157 3 HOH HOH 157 B HOH 158 3 HOH HOH 158 B HOH 160 3 HOH HOH 160 B HOH 161 3 HOH HOH 161 B HOH 162 3 HOH HOH 162 B HOH 164 3 HOH HOH 164 B HOH 165 3 HOH HOH 165 B HOH 167 3 HOH HOH 167 B HOH 168 3 HOH HOH 168 B HOH 171 3 HOH HOH 171 B HOH 174 3 HOH HOH 174 B HOH 177 3 HOH HOH 177 B HOH 178 3 HOH HOH 178 B HOH 179 3 HOH HOH 179 B HOH 180 3 HOH HOH 180 B HOH 181 3 HOH HOH 181 B HOH 182 3 HOH HOH 182 B HOH 187 3 HOH HOH 187 B HOH 188 3 HOH HOH 188 B HOH 189 3 HOH HOH 189 B HOH 190 3 HOH HOH 190 B HOH 192 3 HOH HOH 192 B HOH 193 3 HOH HOH 193 B G 1 n 1 DG 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A MEP 6 n 6 T23 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A G 11 n 1 DG 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B T 14 n 4 DT 14 B A 15 n 5 DA 15 B MEP 16 n 6 T23 16 B A 17 n 7 DA 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B C 20 n 10 DC 20 B author_defined_assembly 2 dimeric A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 A DG 3 A N7 DG 3 1_555 52.2 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 A DT 4 A O4 DT 4 1_555 61.7 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 A DT 4 A O4 DT 4 1_555 82.9 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 A DA 5 A N6 DA 5 1_555 96.7 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 A DA 5 A N6 DA 5 1_555 137.3 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 A DA 5 A N6 DA 5 1_555 54.9 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 A HOH 153 F O HOH 1_555 73.1 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 A HOH 153 F O HOH 1_555 52.1 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 A HOH 153 F O HOH 1_555 130.3 A DA 5 A N6 DA 5 1_555 A CS 22 D CS CS 1_555 A HOH 153 F O HOH 1_555 155.7 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 A HOH 159 F O HOH 1_555 110.3 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 A HOH 159 F O HOH 1_555 61.9 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 A HOH 159 F O HOH 1_555 92.4 A DA 5 A N6 DA 5 1_555 A CS 22 D CS CS 1_555 A HOH 159 F O HOH 1_555 119.9 A HOH 153 F O HOH 1_555 A CS 22 D CS CS 1_555 A HOH 159 F O HOH 1_555 84.4 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 A HOH 191 F O HOH 1_555 127.9 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 A HOH 191 F O HOH 1_555 128.3 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 A HOH 191 F O HOH 1_555 66.7 A DA 5 A N6 DA 5 1_555 A CS 22 D CS CS 1_555 A HOH 191 F O HOH 1_555 44.4 A HOH 153 F O HOH 1_555 A CS 22 D CS CS 1_555 A HOH 191 F O HOH 1_555 156.4 A HOH 159 F O HOH 1_555 A CS 22 D CS CS 1_555 A HOH 191 F O HOH 1_555 78.1 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 145.0 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 162.8 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 105.0 A DA 5 A N6 DA 5 1_555 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 54.4 A HOH 153 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 124.2 A HOH 159 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 102.1 A HOH 191 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 46.6 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 152.5 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 133.0 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 138.5 A DA 5 A N6 DA 5 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 88.7 A HOH 153 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 91.1 A HOH 159 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 89.7 A HOH 191 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 73.3 B HOH 164 G O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 34.7 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 87.8 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 127.5 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 108.9 A DA 5 A N6 DA 5 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 69.4 A HOH 153 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 87.9 A HOH 159 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 157.0 A HOH 191 F O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 102.2 B HOH 164 G O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 65.0 B HOH 192 G O HOH 1_555 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 68.8 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 A DC 10 A OP1 DC 10 1_555 46.7 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 A HOH 123 F O HOH 2_555 99.7 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 A HOH 123 F O HOH 2_555 88.8 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B DT 14 B O3' DT 4 4_556 112.4 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B DT 14 B O3' DT 4 4_556 68.6 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B DT 14 B O3' DT 4 4_556 95.6 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B DA 15 B OP1 DA 5 4_556 153.6 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B DA 15 B OP1 DA 5 4_556 107.1 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B DA 15 B OP1 DA 5 4_556 72.8 B DT 14 B O3' DT 4 4_556 A CS 21 C CS CS 1_555 B DA 15 B OP1 DA 5 4_556 45.6 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B DC 20 B OP1 DC 10 3_555 92.9 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B DC 20 B OP1 DC 10 3_555 132.8 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B DC 20 B OP1 DC 10 3_555 73.2 B DT 14 B O3' DT 4 4_556 A CS 21 C CS CS 1_555 B DC 20 B OP1 DC 10 3_555 153.9 B DA 15 B OP1 DA 5 4_556 A CS 21 C CS CS 1_555 B DC 20 B OP1 DC 10 3_555 108.3 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B DC 20 B OP2 DC 10 3_555 82.4 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B DC 20 B OP2 DC 10 3_555 127.3 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B DC 20 B OP2 DC 10 3_555 116.9 B DT 14 B O3' DT 4 4_556 A CS 21 C CS CS 1_555 B DC 20 B OP2 DC 10 3_555 142.1 B DA 15 B OP1 DA 5 4_556 A CS 21 C CS CS 1_555 B DC 20 B OP2 DC 10 3_555 123.7 B DC 20 B OP1 DC 10 3_555 A CS 21 C CS CS 1_555 B DC 20 B OP2 DC 10 3_555 43.8 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 69.9 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 93.8 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 47.2 B DT 14 B O3' DT 4 4_556 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 140.4 B DA 15 B OP1 DA 5 4_556 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 115.9 B DC 20 B OP1 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 42.3 B DC 20 B OP2 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 77.0 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 155.8 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 147.3 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 100.1 B DT 14 B O3' DT 4 4_556 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 79.3 B DA 15 B OP1 DA 5 4_556 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 48.0 B DC 20 B OP1 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 79.7 B DC 20 B OP2 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 76.3 B HOH 120 G O HOH 3_555 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 115.3 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 55.2 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 101.8 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 101.0 B DT 14 B O3' DT 4 4_556 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 160.7 B DA 15 B OP1 DA 5 4_556 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 150.1 B DC 20 B OP1 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 43.6 B DC 20 B OP2 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 32.5 B HOH 120 G O HOH 3_555 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 54.0 B HOH 161 G O HOH 4_556 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 107.1 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 81.1 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 87.0 A HOH 123 F O HOH 2_555 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 173.5 B DT 14 B O3' DT 4 4_556 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 78.2 B DA 15 B OP1 DA 5 4_556 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 103.6 B DC 20 B OP1 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 113.3 B DC 20 B OP2 DC 10 3_555 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 69.7 B HOH 120 G O HOH 3_555 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 138.1 B HOH 161 G O HOH 4_556 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 80.9 B HOH 179 G O HOH 3_555 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 84.8 A DC 10 A OP2 DC 10 1_555 A CS 23 E CS CS 1_555 A DC 10 A OP1 DC 10 1_555 41.8 A DC 10 A OP2 DC 10 1_555 A CS 23 E CS CS 1_555 A HOH 131 F O HOH 3_655 142.6 A DC 10 A OP1 DC 10 1_555 A CS 23 E CS CS 1_555 A HOH 131 F O HOH 3_655 132.4 A DC 10 A OP2 DC 10 1_555 A CS 23 E CS CS 1_555 B DT 14 B O4' DT 4 4_556 113.2 A DC 10 A OP1 DC 10 1_555 A CS 23 E CS CS 1_555 B DT 14 B O4' DT 4 4_556 71.6 A HOH 131 F O HOH 3_655 A CS 23 E CS CS 1_555 B DT 14 B O4' DT 4 4_556 80.6 A DC 10 A OP2 DC 10 1_555 A CS 23 E CS CS 1_555 B DC 20 B O3' DC 10 2_555 97.8 A DC 10 A OP1 DC 10 1_555 A CS 23 E CS CS 1_555 B DC 20 B O3' DC 10 2_555 101.4 A HOH 131 F O HOH 3_655 A CS 23 E CS CS 1_555 B DC 20 B O3' DC 10 2_555 117.2 B DT 14 B O4' DT 4 4_556 A CS 23 E CS CS 1_555 B DC 20 B O3' DC 10 2_555 91.0 A DC 10 A OP2 DC 10 1_555 A CS 23 E CS CS 1_555 B HOH 125 G O HOH 4_556 161.7 A DC 10 A OP1 DC 10 1_555 A CS 23 E CS CS 1_555 B HOH 125 G O HOH 4_556 139.9 A HOH 131 F O HOH 3_655 A CS 23 E CS CS 1_555 B HOH 125 G O HOH 4_556 54.1 B DT 14 B O4' DT 4 4_556 A CS 23 E CS CS 1_555 B HOH 125 G O HOH 4_556 71.6 B DC 20 B O3' DC 10 2_555 A CS 23 E CS CS 1_555 B HOH 125 G O HOH 4_556 64.1 A DC 10 A OP2 DC 10 1_555 A CS 23 E CS CS 1_555 B HOH 128 G O HOH 2_555 106.2 A DC 10 A OP1 DC 10 1_555 A CS 23 E CS CS 1_555 B HOH 128 G O HOH 2_555 135.9 A HOH 131 F O HOH 3_655 A CS 23 E CS CS 1_555 B HOH 128 G O HOH 2_555 91.7 B DT 14 B O4' DT 4 4_556 A CS 23 E CS CS 1_555 B HOH 128 G O HOH 2_555 123.6 B DC 20 B O3' DC 10 2_555 A CS 23 E CS CS 1_555 B HOH 128 G O HOH 2_555 44.2 B HOH 125 G O HOH 4_556 A CS 23 E CS CS 1_555 B HOH 128 G O HOH 2_555 59.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O O HOH HOH 133 173 1.09 1 B B O O HOH HOH 174 182 1.39 1 B B OP1 O DG HOH 13 148 1.59 1 B B N3 O DA HOH 17 189 1.59 1 A A O O HOH HOH 113 146 1.66 1 A A O O HOH HOH 110 172 1.67 1 B B O O HOH HOH 143 188 1.72 1 B B OP2 O DC HOH 20 179 1.74 1 B B O O HOH HOH 178 189 1.77 1 A A O O HOH HOH 119 176 1.82 1 B B N6 O DA HOH 15 164 1.89 1 B B C1' O DG HOH 13 135 1.90 1 A B C2 O DA HOH 5 158 1.96 1 B B O O HOH HOH 141 162 1.97 1 A A C5' O DG HOH 3 176 2.02 1 A A C5' O DT HOH 4 175 2.04 1 B B O O HOH HOH 125 135 2.10 1 B B OP1 O DT HOH 14 140 2.15 1 B B O O HOH HOH 164 192 2.16 1 B B C5' O T23 HOH 16 154 2.18 1 A B O O HOH HOH 130 136 1.65 1_555 3_545 1 A A O O HOH HOH 133 138 1.90 1_555 2_555 1 A A O O HOH HOH 126 172 1.93 1_555 2_554 1 A A O O HOH HOH 133 175 2.16 1_555 2_555 0.169 0.15 0.15 1.06 20 6913 6913 RANDOM 1 THROUGHOUT 0 0 SAD 1.06 20 92 503 3 408 0 1.06 20 1I0J 6913 6913 0 0 0.057 1 97.2 data reduction DENZO data scaling SCALEPACK refinement CNS refinement SHELXL-97 phasing CNS 1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N covale 1.606 both A DA 5 A O3' DA 5 1_555 A T23 6 A P T23 6 1_555 covale 1.623 one A T23 6 A C3M T23 6 1_555 A DA 7 A P DA 7 1_555 covale 1.604 both B DA 15 B O3' DA 5 1_555 B T23 16 B P T23 6 1_555 covale 1.621 one B T23 16 B C3M T23 6 1_555 B DA 17 B P DA 7 1_555 metalc 3.558 A DG 3 A O6 DG 3 1_555 A CS 22 D CS CS 1_555 metalc 3.497 A DG 3 A N7 DG 3 1_555 A CS 22 D CS CS 1_555 metalc 3.076 A DT 4 A O4 DT 4 1_555 A CS 22 D CS CS 1_555 metalc 3.892 A DA 5 A N6 DA 5 1_555 A CS 22 D CS CS 1_555 metalc 3.166 A DG 9 A O3' DG 9 1_555 A CS 21 C CS CS 1_555 metalc 3.171 A DC 10 A OP1 DC 10 1_555 A CS 21 C CS CS 1_555 metalc 2.888 A DC 10 A OP2 DC 10 1_555 A CS 23 E CS CS 1_555 metalc 3.856 A DC 10 A OP1 DC 10 1_555 A CS 23 E CS CS 1_555 metalc 3.340 A CS 21 C CS CS 1_555 A HOH 123 F O HOH 2_555 metalc 3.175 A CS 21 C CS CS 1_555 B DT 14 B O3' DT 4 4_556 metalc 3.324 A CS 21 C CS CS 1_555 B DA 15 B OP1 DA 5 4_556 metalc 3.610 A CS 21 C CS CS 1_555 B DC 20 B OP1 DC 10 3_555 metalc 3.242 A CS 21 C CS CS 1_555 B DC 20 B OP2 DC 10 3_555 metalc 3.442 A CS 21 C CS CS 1_555 B HOH 120 G O HOH 3_555 metalc 3.250 A CS 21 C CS CS 1_555 B HOH 161 G O HOH 4_556 metalc 2.641 A CS 21 C CS CS 1_555 B HOH 179 G O HOH 3_555 metalc 2.944 A CS 21 C CS CS 1_555 B HOH 190 G O HOH 3_555 metalc 3.352 A CS 22 D CS CS 1_555 A HOH 153 F O HOH 1_555 metalc 3.768 A CS 22 D CS CS 1_555 A HOH 159 F O HOH 1_555 metalc 2.914 A CS 22 D CS CS 1_555 A HOH 191 F O HOH 1_555 metalc 3.703 A CS 22 D CS CS 1_555 B HOH 164 G O HOH 1_555 metalc 2.575 A CS 22 D CS CS 1_555 B HOH 192 G O HOH 1_555 metalc 3.330 A CS 22 D CS CS 1_555 B HOH 193 G O HOH 1_555 metalc 3.036 A CS 23 E CS CS 1_555 A HOH 131 F O HOH 3_655 metalc 3.266 A CS 23 E CS CS 1_555 B DT 14 B O4' DT 4 4_556 metalc 3.418 A CS 23 E CS CS 1_555 B DC 20 B O3' DC 10 2_555 metalc 3.304 A CS 23 E CS CS 1_555 B HOH 125 G O HOH 4_556 metalc 3.279 A CS 23 E CS CS 1_555 B HOH 128 G O HOH 2_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 20 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 20 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 20 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 17 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 17 B N6 DA 7 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B T23 16 B N3 T23 6 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B T23 16 B O4 T23 6 1_555 hydrog WATSON-CRICK A T23 6 A N3 T23 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A T23 6 A O4 T23 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 14 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 14 B O4 DT 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 13 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 13 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 11 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 11 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 11 B N2 DG 1 1_555 DNA A-form double helix, modified sugar, DNA 1I0J PDB 1 1I0J 1 10 1I0J 1 10 1I0J A 1 1 10 11 20 1I0J 11 20 1I0J B 1 1 10 BINDING SITE FOR RESIDUE CS A 21 A CS 21 Software 7 BINDING SITE FOR RESIDUE CS A 22 A CS 22 Software 4 BINDING SITE FOR RESIDUE CS A 23 A CS 23 Software 4 A DG 9 A DG 9 7 1_555 A DC 10 A DC 10 7 1_555 B DT 14 B DT 4 7 4_556 B DA 15 B DA 5 7 4_556 B DC 20 B DC 10 7 3_555 B HOH 179 G HOH 7 3_555 B HOH 190 G HOH 7 3_555 A DG 3 A DG 3 4 1_555 A DT 4 A DT 4 4 1_555 A HOH 191 F HOH 4 1_555 B HOH 192 G HOH 4 1_555 A DC 10 A DC 10 4 1_555 A HOH 131 F HOH 4 3_655 B DT 14 B DT 4 4 4_556 B DC 20 B DC 10 4 2_555 19 orthorhombic P 21 21 21