0.054597 -0.000000 0.000000 0.000000 0.032595 0.000000 0.000000 0.000000 0.023534 0.00000 0.00000 0.00000 Tereshko, V. Wilds, C.J. Minasov, G. Prakash, T.P. Maier, M.A. Howard, A. Wawrzak, Z. Manoharan, M. Egli, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90 90 90 18.316 30.680 42.491 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer C10 H26 N4 202.340 SPERMINE non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 75 N N N 76 N C N 77 N C N 78 N C N 79 N N N 80 N C N 81 N C N 82 N C N 83 N C N 84 N N N 85 N C N 86 N C N 87 N C N 88 N N N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 29 1208 1215 10.1093/nar/29.5.1208 11222771 Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments. 2001 10.2210/pdb1i0t/pdb pdb_00001i0t 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-11-01 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.6630 1.0 17-ID APS 0.6630 SYNCHROTRON APS BEAMLINE 17-ID 1810.205 5'-D(*CP*GP*CP*GP*CP*G)-3' 2 syn polymer 202.340 SPERMINE 1 syn non-polymer 18.015 water 40 nat water no no (DC)(DG)(DC)(DG)(DC)(DG) CGCGCG A,B polydeoxyribonucleotide n n n n n n 1 1.65 25.40 VAPOR DIFFUSION, SITTING DROP 6.0 spermine, pH 6.0, VAPOR DIFFUSION, HANGING DROP at 298 K, VAPOR DIFFUSION, SITTING DROP 298 1.810 1 19 A 1 B 12 2.764 A_DC1:DG12_B 1 -3.201 -0.200 0.058 -0.133 -2.760 1 19 A 2 B 11 1.806 A_DG2:DC11_B 2 3.834 0.259 0.128 -0.168 2.807 1 19 A 3 B 10 2.776 A_DC3:DG10_B 3 6.271 -0.295 0.030 -0.154 -4.966 1 19 A 4 B 9 2.402 A_DG4:DC9_B 4 3.459 0.292 0.043 -0.179 5.492 1 19 A 5 B 8 1.095 A_DC5:DG8_B 5 -7.915 -0.178 -0.052 -0.178 -3.906 1 19 A 6 B 7 1.747 A_DG6:DC7_B 6 2.661 0.217 0.065 -0.157 4.222 -9.631 A A 1 2 9.516 B B 12 11 3.553 -1.574 0.266 5.459 AA_DC1DG2:DC11DG12_BB 1 2.353 14.221 -9.207 -28.654 7.356 3.114 -55.039 A A 2 3 7.292 B B 11 10 3.183 -6.724 0.655 -0.300 AA_DG2DC3:DG10DC11_BB 2 1.332 1.445 -54.643 0.710 0.785 2.585 -7.399 A A 3 4 -8.467 B B 10 9 3.613 1.080 -0.433 5.578 AA_DC3DG4:DC9DG10_BB 3 -1.579 -12.375 -7.148 -46.785 -8.566 3.271 -51.549 A A 4 5 0.871 B B 9 8 3.278 -0.757 -0.704 -1.054 AA_DG4DC5:DG8DC9_BB 4 0.610 0.701 -51.540 1.264 -0.769 3.566 -7.162 A A 5 6 1.047 B B 8 7 3.702 -0.128 0.097 5.520 AA_DC5DG6:DC7DG8_BB 5 2.341 19.089 -6.768 -43.650 10.543 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-04-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-01-29 REL SPM SPERMINE HOH water SPM 13 2 SPM SPM 13 A HOH 100 3 HOH HOH 100 A HOH 101 3 HOH HOH 101 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 115 3 HOH HOH 115 A HOH 116 3 HOH HOH 116 A HOH 117 3 HOH HOH 117 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 124 3 HOH HOH 124 A HOH 128 3 HOH HOH 128 A HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 145 3 HOH HOH 145 A HOH 147 3 HOH HOH 147 A HOH 102 3 HOH HOH 102 B HOH 106 3 HOH HOH 106 B HOH 107 3 HOH HOH 107 B HOH 109 3 HOH HOH 109 B HOH 113 3 HOH HOH 113 B HOH 114 3 HOH HOH 114 B HOH 123 3 HOH HOH 123 B HOH 125 3 HOH HOH 125 B HOH 129 3 HOH HOH 129 B HOH 133 3 HOH HOH 133 B HOH 134 3 HOH HOH 134 B HOH 135 3 HOH HOH 135 B HOH 136 3 HOH HOH 136 B HOH 149 3 HOH HOH 149 B HOH 157 3 HOH HOH 157 B HOH 165 3 HOH HOH 165 B HOH 173 3 HOH HOH 173 B HOH 191 3 HOH HOH 191 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 1 DC 7 B G 8 n 2 DG 8 B C 9 n 3 DC 9 B G 10 n 4 DG 10 B C 11 n 5 DC 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DG 2 0.054 SIDE CHAIN 1 B DG 10 0.056 SIDE CHAIN 1 7.81 1.20 119.70 127.51 A A A C3' O3' P DG DG DC 4 4 5 Y 1 2.48 0.40 120.30 122.78 A A A C6 N1 C2 DC DC DC 5 5 5 N 1 -3.62 0.50 117.40 113.78 A A A C4 C5 C6 DC DC DC 5 5 5 N 1 -3.80 0.60 128.60 124.80 B B B C5 C6 O6 DG DG DG 12 12 12 N 1 A A C3' C2' DG DG 4 4 -0.054 0.008 1.516 1.462 N 1 A A C5 C6 DC DC 5 5 0.054 0.008 1.339 1.393 N 1 B B O O HOH HOH 157 191 2.19 1_555 2_664 0.1850000 0.1600000 0.1600000 0.60 20 57623 57623 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.60 20 40 294 14 240 0 0.60 20 1I0T 57623 57623 -3 0.0620000 1 96.0 phasing AMoRE refinement SHELXL-97 data reduction DENZO data scaling SCALEPACK 0.6 A STRUCTURE OF Z-DNA CGCGCG 1 N N 1 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 10 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 10 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 10 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 9 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 9 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 9 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 7 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 7 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 7 B N4 DC 1 1_555 DNA Z-form double helix, DNA 1I0T PDB 1 1I0T 1 6 1I0T 1 6 1I0T A 1 1 6 7 12 1I0T 7 12 1I0T B 1 1 6 BINDING SITE FOR RESIDUE SPM A 13 A SPM 13 Software 16 A DG 2 A DG 2 16 1_555 A DG 2 A DG 2 16 4_556 A DC 3 A DC 3 16 1_555 A DG 4 A DG 4 16 1_555 A HOH 101 D HOH 16 4_566 A HOH 103 D HOH 16 1_555 A HOH 112 D HOH 16 1_555 A HOH 119 D HOH 16 1_555 B DG 8 B DG 2 16 1_555 B DC 9 B DC 3 16 4_556 B DC 9 B DC 3 16 1_555 B DG 10 B DG 4 16 4_556 B DG 10 B DG 4 16 1_655 B DC 11 B DC 5 16 1_655 B DG 12 B DG 6 16 1_655 B HOH 173 E HOH 16 4_556 19 orthorhombic P 21 21 21