1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mo, H.
Moore, R.C.
Cohen, F.E.
Westaway, D.
Prusiner, S.B.
Wright, P.E.
Dyson, H.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
2352
2357
10.1073/pnas.051627998
11226243
Two different neurodegenerative diseases caused by proteins with similar structures.
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
292
797
817
10.1006/jmbi.1999.3108
Ataxia in Prion Protein (PrP)-Deficient Mice is Associated with Upregulation of the Novel PrP-like Protein Doppel
1999
10.2210/pdb1i17/pdb
pdb_00001i17
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
12297.794
PRION-LIKE PROTEIN
GLOBULAR DOMAIN (RESIDUES 51-157)
1
man
polymer
MOUSE DOPPEL
no
no
RVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKL
HQRVLWRLIKEICSAKHCDFWLERGAA
RVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKL
HQRVLWRLIKEICSAKHCDFWLERGAA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
Escherichia coli
sample
10090
Mus musculus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PLASMID
PET21A(+)
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-03-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2001-01-31
REL
REL
The structure was determined using triple-resonance NMR spectroscopy
structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
0.02M
5.2
1
atm
299
K
based on 1311 distance restraints
distance geometry molecular dynamics simulated annealing
16
lowest energy
4mM 15N or 2mM 15N/13C protein 20mM d3-NaOAc, pH5.2
D2O:H2O = 1:9
Guentert
structure solution
DYANA
1.5
Case
refinement
Amber
7
600
Bruker
DRX
800
Bruker
DRX
ARG
1
n
1
ARG
1
A
VAL
2
n
2
VAL
2
A
ALA
3
n
3
ALA
3
A
GLU
4
n
4
GLU
4
A
ASN
5
n
5
ASN
5
A
ARG
6
n
6
ARG
6
A
PRO
7
n
7
PRO
7
A
GLY
8
n
8
GLY
8
A
ALA
9
n
9
ALA
9
A
PHE
10
n
10
PHE
10
A
ILE
11
n
11
ILE
11
A
LYS
12
n
12
LYS
12
A
GLN
13
n
13
GLN
13
A
GLY
14
n
14
GLY
14
A
ARG
15
n
15
ARG
15
A
LYS
16
n
16
LYS
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ILE
19
n
19
ILE
19
A
ASP
20
n
20
ASP
20
A
PHE
21
n
21
PHE
21
A
GLY
22
n
22
GLY
22
A
ALA
23
n
23
ALA
23
A
GLU
24
n
24
GLU
24
A
GLY
25
n
25
GLY
25
A
ASN
26
n
26
ASN
26
A
ARG
27
n
27
ARG
27
A
TYR
28
n
28
TYR
28
A
TYR
29
n
29
TYR
29
A
ALA
30
n
30
ALA
30
A
ALA
31
n
31
ALA
31
A
ASN
32
n
32
ASN
32
A
TYR
33
n
33
TYR
33
A
TRP
34
n
34
TRP
34
A
GLN
35
n
35
GLN
35
A
PHE
36
n
36
PHE
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
GLY
39
n
39
GLY
39
A
ILE
40
n
40
ILE
40
A
TYR
41
n
41
TYR
41
A
TYR
42
n
42
TYR
42
A
GLU
43
n
43
GLU
43
A
GLY
44
n
44
GLY
44
A
CYS
45
n
45
CYS
45
A
SER
46
n
46
SER
46
A
GLU
47
n
47
GLU
47
A
ALA
48
n
48
ALA
48
A
ASN
49
n
49
ASN
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
LYS
52
n
52
LYS
52
A
GLU
53
n
53
GLU
53
A
MET
54
n
54
MET
54
A
LEU
55
n
55
LEU
55
A
VAL
56
n
56
VAL
56
A
THR
57
n
57
THR
57
A
SER
58
n
58
SER
58
A
CYS
59
n
59
CYS
59
A
VAL
60
n
60
VAL
60
A
ASN
61
n
61
ASN
61
A
ALA
62
n
62
ALA
62
A
THR
63
n
63
THR
63
A
GLN
64
n
64
GLN
64
A
ALA
65
n
65
ALA
65
A
ALA
66
n
66
ALA
66
A
ASN
67
n
67
ASN
67
A
GLN
68
n
68
GLN
68
A
ALA
69
n
69
ALA
69
A
GLU
70
n
70
GLU
70
A
PHE
71
n
71
PHE
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
GLU
74
n
74
GLU
74
A
LYS
75
n
75
LYS
75
A
GLN
76
n
76
GLN
76
A
ASP
77
n
77
ASP
77
A
SER
78
n
78
SER
78
A
LYS
79
n
79
LYS
79
A
LEU
80
n
80
LEU
80
A
HIS
81
n
81
HIS
81
A
GLN
82
n
82
GLN
82
A
ARG
83
n
83
ARG
83
A
VAL
84
n
84
VAL
84
A
LEU
85
n
85
LEU
85
A
TRP
86
n
86
TRP
86
A
ARG
87
n
87
ARG
87
A
LEU
88
n
88
LEU
88
A
ILE
89
n
89
ILE
89
A
LYS
90
n
90
LYS
90
A
GLU
91
n
91
GLU
91
A
ILE
92
n
92
ILE
92
A
CYS
93
n
93
CYS
93
A
SER
94
n
94
SER
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
HIS
97
n
97
HIS
97
A
CYS
98
n
98
CYS
98
A
ASP
99
n
99
ASP
99
A
PHE
100
n
100
PHE
100
A
TRP
101
n
101
TRP
101
A
LEU
102
n
102
LEU
102
A
GLU
103
n
103
GLU
103
A
ARG
104
n
104
ARG
104
A
GLY
105
n
105
GLY
105
A
ALA
106
n
106
ALA
106
A
ALA
107
n
107
ALA
107
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
11
A
N
ILE
11
A
O
GLY
39
A
O
GLY
39
3
A
TYR
41
0.069
SIDE CHAIN
1
3.75
0.50
120.30
124.05
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
104
104
104
N
3
3.32
0.50
120.30
123.62
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
6
6
6
N
4
4.14
0.50
120.30
124.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
1
1
1
N
4
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
5
3.11
0.50
120.30
123.41
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
6
6
6
N
7
3.67
0.50
120.30
123.97
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
1
1
1
N
8
3.15
0.50
120.30
123.45
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
1
1
1
N
8
3.18
0.50
120.30
123.48
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
83
83
83
N
9
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
1
1
1
N
10
3.16
0.50
120.30
123.46
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
10
3.19
0.50
120.30
123.49
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
12
3.11
0.50
120.30
123.41
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
1
1
1
N
13
3.59
0.50
120.30
123.89
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
83
83
83
N
14
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
6
6
6
N
14
3.19
0.50
120.30
123.49
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
83
83
83
N
15
3.63
0.50
120.30
123.93
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
73
73
73
N
16
3.19
0.50
120.30
123.49
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
15
15
15
N
18
3.39
0.50
120.30
123.69
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
6
6
6
N
19
3.07
0.50
120.30
123.37
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
6
6
6
N
20
3.28
0.50
120.30
123.58
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
1
1
1
N
1
A
ALA
3
-75.33
37.30
1
A
SER
46
-141.70
-58.71
1
A
ASP
77
-130.32
-45.33
2
A
SER
46
-137.84
-58.72
2
A
GLU
74
-79.92
47.23
2
A
LYS
75
-147.29
-33.55
2
A
LYS
79
-124.57
-59.59
3
A
VAL
2
-91.65
-82.40
3
A
ALA
3
-153.92
-159.70
3
A
SER
46
-131.83
-57.27
3
A
GLU
74
-79.84
46.80
3
A
LYS
75
-155.31
-61.46
3
A
LYS
96
-72.99
49.80
4
A
CYS
45
-55.54
109.23
4
A
SER
46
-125.81
-56.25
4
A
ASP
77
-136.72
-39.91
5
A
SER
46
-139.31
-58.40
6
A
ASP
77
-138.10
-37.21
7
A
SER
46
-144.68
-61.09
7
A
ASP
77
-135.10
-40.22
8
A
SER
46
-145.91
-50.81
8
A
LYS
75
-142.37
-53.68
8
A
SER
78
-143.84
37.17
9
A
SER
46
-139.06
-58.61
9
A
LEU
102
-124.18
-162.77
9
A
ALA
106
-67.18
92.64
10
A
SER
46
-148.02
-51.40
10
A
TRP
101
-67.32
84.31
11
A
LYS
12
-101.77
73.52
11
A
SER
46
-132.26
-61.90
11
A
ASP
77
-132.93
-40.92
11
A
LYS
79
-120.73
-67.69
12
A
SER
46
-146.55
-52.52
12
A
ASP
77
-135.49
-35.04
12
A
GLU
103
-139.49
-74.21
13
A
LYS
16
-46.26
105.77
13
A
SER
46
-136.87
-59.32
13
A
GLU
74
-74.49
43.67
13
A
LYS
75
-155.31
-62.47
13
A
ARG
104
-141.90
-59.31
14
A
SER
46
-140.76
-60.19
14
A
ASP
77
-136.72
-36.78
15
A
SER
46
-147.30
-47.23
15
A
ASP
77
-135.76
-40.31
16
A
SER
46
-139.94
-59.47
16
A
LYS
79
-121.33
-77.76
17
A
SER
46
-145.52
-52.61
17
A
ASP
77
-135.25
-44.27
17
A
LYS
79
-120.40
-76.38
17
A
GLU
103
-140.09
-65.48
18
A
SER
72
-132.93
-58.80
18
A
SER
78
-80.62
49.96
18
A
ARG
104
-138.12
-77.07
19
A
LYS
75
-147.32
-53.19
19
A
LYS
96
-67.52
92.28
20
A
SER
46
-142.23
-77.74
20
A
ASP
77
-133.17
-39.92
NMR STRUCTURE OF MOUSE DOPPEL 51-157
1
N
N
A
GLY
22
A
GLY
22
HELX_P
A
TYR
33
A
TYR
33
1
1
12
A
TRP
34
A
TRP
34
HELX_P
A
PHE
36
A
PHE
36
5
2
3
A
THR
51
A
THR
51
HELX_P
A
ASN
67
A
ASN
67
1
3
17
A
ASN
67
A
ASN
67
HELX_P
A
GLN
76
A
GLN
76
1
4
10
A
SER
78
A
SER
78
HELX_P
A
LYS
96
A
LYS
96
1
5
19
disulf
2.037
A
CYS
45
A
SG
CYS
45
1_555
A
CYS
98
A
SG
CYS
98
1_555
disulf
2.043
A
CYS
59
A
SG
CYS
59
1_555
A
CYS
93
A
SG
CYS
93
1_555
UNKNOWN FUNCTION
mouse doppel, doppel, dpl, prion, UNKNOWN FUNCTION
PRND_MOUSE
UNP
1
51
Q9QUG3
RVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKL
HQRVLWRLIKEICSAKHCDFWLERGAA
51
157
1I17
1
107
Q9QUG3
A
1
1
107
2
anti-parallel
A
ALA
9
A
ALA
9
A
ILE
11
A
ILE
11
A
GLY
39
A
GLY
39
A
TYR
41
A
TYR
41
1
P 1