1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mo, H. Moore, R.C. Cohen, F.E. Westaway, D. Prusiner, S.B. Wright, P.E. Dyson, H.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 98 2352 2357 10.1073/pnas.051627998 11226243 Two different neurodegenerative diseases caused by proteins with similar structures. 2001 UK J.Mol.Biol. JMOBAK 0070 0022-2836 292 797 817 10.1006/jmbi.1999.3108 Ataxia in Prion Protein (PrP)-Deficient Mice is Associated with Upregulation of the Novel PrP-like Protein Doppel 1999 10.2210/pdb1i17/pdb pdb_00001i17 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 12297.794 PRION-LIKE PROTEIN GLOBULAR DOMAIN (RESIDUES 51-157) 1 man polymer MOUSE DOPPEL no no RVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKL HQRVLWRLIKEICSAKHCDFWLERGAA RVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKL HQRVLWRLIKEICSAKHCDFWLERGAA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia Escherichia coli sample 10090 Mus musculus 469008 Escherichia coli BL21(DE3) BL21 (DE3) PLASMID PET21A(+) database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-03-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2001-01-31 REL REL The structure was determined using triple-resonance NMR spectroscopy structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 0.02M 5.2 1 atm 299 K based on 1311 distance restraints distance geometry molecular dynamics simulated annealing 16 lowest energy 4mM 15N or 2mM 15N/13C protein 20mM d3-NaOAc, pH5.2 D2O:H2O = 1:9 Guentert structure solution DYANA 1.5 Case refinement Amber 7 600 Bruker DRX 800 Bruker DRX ARG 1 n 1 ARG 1 A VAL 2 n 2 VAL 2 A ALA 3 n 3 ALA 3 A GLU 4 n 4 GLU 4 A ASN 5 n 5 ASN 5 A ARG 6 n 6 ARG 6 A PRO 7 n 7 PRO 7 A GLY 8 n 8 GLY 8 A ALA 9 n 9 ALA 9 A PHE 10 n 10 PHE 10 A ILE 11 n 11 ILE 11 A LYS 12 n 12 LYS 12 A GLN 13 n 13 GLN 13 A GLY 14 n 14 GLY 14 A ARG 15 n 15 ARG 15 A LYS 16 n 16 LYS 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ILE 19 n 19 ILE 19 A ASP 20 n 20 ASP 20 A PHE 21 n 21 PHE 21 A GLY 22 n 22 GLY 22 A ALA 23 n 23 ALA 23 A GLU 24 n 24 GLU 24 A GLY 25 n 25 GLY 25 A ASN 26 n 26 ASN 26 A ARG 27 n 27 ARG 27 A TYR 28 n 28 TYR 28 A TYR 29 n 29 TYR 29 A ALA 30 n 30 ALA 30 A ALA 31 n 31 ALA 31 A ASN 32 n 32 ASN 32 A TYR 33 n 33 TYR 33 A TRP 34 n 34 TRP 34 A GLN 35 n 35 GLN 35 A PHE 36 n 36 PHE 36 A PRO 37 n 37 PRO 37 A ASP 38 n 38 ASP 38 A GLY 39 n 39 GLY 39 A ILE 40 n 40 ILE 40 A TYR 41 n 41 TYR 41 A TYR 42 n 42 TYR 42 A GLU 43 n 43 GLU 43 A GLY 44 n 44 GLY 44 A CYS 45 n 45 CYS 45 A SER 46 n 46 SER 46 A GLU 47 n 47 GLU 47 A ALA 48 n 48 ALA 48 A ASN 49 n 49 ASN 49 A VAL 50 n 50 VAL 50 A THR 51 n 51 THR 51 A LYS 52 n 52 LYS 52 A GLU 53 n 53 GLU 53 A MET 54 n 54 MET 54 A LEU 55 n 55 LEU 55 A VAL 56 n 56 VAL 56 A THR 57 n 57 THR 57 A SER 58 n 58 SER 58 A CYS 59 n 59 CYS 59 A VAL 60 n 60 VAL 60 A ASN 61 n 61 ASN 61 A ALA 62 n 62 ALA 62 A THR 63 n 63 THR 63 A GLN 64 n 64 GLN 64 A ALA 65 n 65 ALA 65 A ALA 66 n 66 ALA 66 A ASN 67 n 67 ASN 67 A GLN 68 n 68 GLN 68 A ALA 69 n 69 ALA 69 A GLU 70 n 70 GLU 70 A PHE 71 n 71 PHE 71 A SER 72 n 72 SER 72 A ARG 73 n 73 ARG 73 A GLU 74 n 74 GLU 74 A LYS 75 n 75 LYS 75 A GLN 76 n 76 GLN 76 A ASP 77 n 77 ASP 77 A SER 78 n 78 SER 78 A LYS 79 n 79 LYS 79 A LEU 80 n 80 LEU 80 A HIS 81 n 81 HIS 81 A GLN 82 n 82 GLN 82 A ARG 83 n 83 ARG 83 A VAL 84 n 84 VAL 84 A LEU 85 n 85 LEU 85 A TRP 86 n 86 TRP 86 A ARG 87 n 87 ARG 87 A LEU 88 n 88 LEU 88 A ILE 89 n 89 ILE 89 A LYS 90 n 90 LYS 90 A GLU 91 n 91 GLU 91 A ILE 92 n 92 ILE 92 A CYS 93 n 93 CYS 93 A SER 94 n 94 SER 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A HIS 97 n 97 HIS 97 A CYS 98 n 98 CYS 98 A ASP 99 n 99 ASP 99 A PHE 100 n 100 PHE 100 A TRP 101 n 101 TRP 101 A LEU 102 n 102 LEU 102 A GLU 103 n 103 GLU 103 A ARG 104 n 104 ARG 104 A GLY 105 n 105 GLY 105 A ALA 106 n 106 ALA 106 A ALA 107 n 107 ALA 107 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 11 A N ILE 11 A O GLY 39 A O GLY 39 3 A TYR 41 0.069 SIDE CHAIN 1 3.75 0.50 120.30 124.05 A A A NE CZ NH1 ARG ARG ARG 104 104 104 N 3 3.32 0.50 120.30 123.62 A A A NE CZ NH1 ARG ARG ARG 6 6 6 N 4 4.14 0.50 120.30 124.44 A A A NE CZ NH1 ARG ARG ARG 1 1 1 N 4 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 73 73 73 N 5 3.11 0.50 120.30 123.41 A A A NE CZ NH1 ARG ARG ARG 6 6 6 N 7 3.67 0.50 120.30 123.97 A A A NE CZ NH1 ARG ARG ARG 1 1 1 N 8 3.15 0.50 120.30 123.45 A A A NE CZ NH1 ARG ARG ARG 1 1 1 N 8 3.18 0.50 120.30 123.48 A A A NE CZ NH1 ARG ARG ARG 83 83 83 N 9 3.35 0.50 120.30 123.65 A A A NE CZ NH1 ARG ARG ARG 1 1 1 N 10 3.16 0.50 120.30 123.46 A A A NE CZ NH1 ARG ARG ARG 15 15 15 N 10 3.19 0.50 120.30 123.49 A A A NE CZ NH1 ARG ARG ARG 73 73 73 N 12 3.11 0.50 120.30 123.41 A A A NE CZ NH1 ARG ARG ARG 1 1 1 N 13 3.59 0.50 120.30 123.89 A A A NE CZ NH1 ARG ARG ARG 83 83 83 N 14 3.35 0.50 120.30 123.65 A A A NE CZ NH1 ARG ARG ARG 6 6 6 N 14 3.19 0.50 120.30 123.49 A A A NE CZ NH1 ARG ARG ARG 83 83 83 N 15 3.63 0.50 120.30 123.93 A A A NE CZ NH1 ARG ARG ARG 73 73 73 N 16 3.19 0.50 120.30 123.49 A A A NE CZ NH1 ARG ARG ARG 15 15 15 N 18 3.39 0.50 120.30 123.69 A A A NE CZ NH1 ARG ARG ARG 6 6 6 N 19 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 6 6 6 N 20 3.28 0.50 120.30 123.58 A A A NE CZ NH1 ARG ARG ARG 1 1 1 N 1 A ALA 3 -75.33 37.30 1 A SER 46 -141.70 -58.71 1 A ASP 77 -130.32 -45.33 2 A SER 46 -137.84 -58.72 2 A GLU 74 -79.92 47.23 2 A LYS 75 -147.29 -33.55 2 A LYS 79 -124.57 -59.59 3 A VAL 2 -91.65 -82.40 3 A ALA 3 -153.92 -159.70 3 A SER 46 -131.83 -57.27 3 A GLU 74 -79.84 46.80 3 A LYS 75 -155.31 -61.46 3 A LYS 96 -72.99 49.80 4 A CYS 45 -55.54 109.23 4 A SER 46 -125.81 -56.25 4 A ASP 77 -136.72 -39.91 5 A SER 46 -139.31 -58.40 6 A ASP 77 -138.10 -37.21 7 A SER 46 -144.68 -61.09 7 A ASP 77 -135.10 -40.22 8 A SER 46 -145.91 -50.81 8 A LYS 75 -142.37 -53.68 8 A SER 78 -143.84 37.17 9 A SER 46 -139.06 -58.61 9 A LEU 102 -124.18 -162.77 9 A ALA 106 -67.18 92.64 10 A SER 46 -148.02 -51.40 10 A TRP 101 -67.32 84.31 11 A LYS 12 -101.77 73.52 11 A SER 46 -132.26 -61.90 11 A ASP 77 -132.93 -40.92 11 A LYS 79 -120.73 -67.69 12 A SER 46 -146.55 -52.52 12 A ASP 77 -135.49 -35.04 12 A GLU 103 -139.49 -74.21 13 A LYS 16 -46.26 105.77 13 A SER 46 -136.87 -59.32 13 A GLU 74 -74.49 43.67 13 A LYS 75 -155.31 -62.47 13 A ARG 104 -141.90 -59.31 14 A SER 46 -140.76 -60.19 14 A ASP 77 -136.72 -36.78 15 A SER 46 -147.30 -47.23 15 A ASP 77 -135.76 -40.31 16 A SER 46 -139.94 -59.47 16 A LYS 79 -121.33 -77.76 17 A SER 46 -145.52 -52.61 17 A ASP 77 -135.25 -44.27 17 A LYS 79 -120.40 -76.38 17 A GLU 103 -140.09 -65.48 18 A SER 72 -132.93 -58.80 18 A SER 78 -80.62 49.96 18 A ARG 104 -138.12 -77.07 19 A LYS 75 -147.32 -53.19 19 A LYS 96 -67.52 92.28 20 A SER 46 -142.23 -77.74 20 A ASP 77 -133.17 -39.92 NMR STRUCTURE OF MOUSE DOPPEL 51-157 1 N N A GLY 22 A GLY 22 HELX_P A TYR 33 A TYR 33 1 1 12 A TRP 34 A TRP 34 HELX_P A PHE 36 A PHE 36 5 2 3 A THR 51 A THR 51 HELX_P A ASN 67 A ASN 67 1 3 17 A ASN 67 A ASN 67 HELX_P A GLN 76 A GLN 76 1 4 10 A SER 78 A SER 78 HELX_P A LYS 96 A LYS 96 1 5 19 disulf 2.037 A CYS 45 A SG CYS 45 1_555 A CYS 98 A SG CYS 98 1_555 disulf 2.043 A CYS 59 A SG CYS 59 1_555 A CYS 93 A SG CYS 93 1_555 UNKNOWN FUNCTION mouse doppel, doppel, dpl, prion, UNKNOWN FUNCTION PRND_MOUSE UNP 1 51 Q9QUG3 RVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKL HQRVLWRLIKEICSAKHCDFWLERGAA 51 157 1I17 1 107 Q9QUG3 A 1 1 107 2 anti-parallel A ALA 9 A ALA 9 A ILE 11 A ILE 11 A GLY 39 A GLY 39 A TYR 41 A TYR 41 1 P 1