0.023315
0.000000
0.002442
0.000000
0.033356
0.000000
0.000000
0.000000
0.021591
0.00000
0.00000
0.00000
Coste, F.
Shepard, W.
Zelwer, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
95.98
90.00
42.890
29.980
46.570
Cl2 H6 N2 Pt
300.045
Cisplatin
diammine(dichloro)platinum
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C10 H26 N4
202.340
SPERMINE
non-polymer
N
1
N
PT
N
2
N
N
N
3
N
N
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
CL
N
9
N
CL
N
10
N
H
N
11
N
H
N
12
N
O
N
13
N
P
N
14
N
O
N
15
N
O
N
16
N
O
N
17
N
C
N
18
R
C
N
19
N
O
N
20
S
C
N
21
N
O
N
22
N
C
N
23
R
C
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
Y
28
N
C
N
29
N
N
Y
30
N
N
Y
31
N
C
Y
32
N
N
Y
33
N
C
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
O
N
49
N
P
N
50
N
O
N
51
N
O
N
52
N
O
N
53
N
C
N
54
R
C
N
55
N
O
N
56
S
C
N
57
N
O
N
58
N
C
N
59
R
C
N
60
N
N
N
61
N
C
N
62
N
O
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
C
N
67
N
C
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
O
N
83
N
P
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
O
N
90
S
C
N
91
N
O
N
92
N
C
N
93
R
C
Y
94
N
N
Y
95
N
C
Y
96
N
N
Y
97
N
C
N
98
N
C
N
99
N
O
N
100
N
N
N
101
N
C
N
102
N
N
N
103
N
N
Y
104
N
C
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
O
N
120
N
P
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
C
N
125
R
C
N
126
N
O
N
127
S
C
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
N
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
N
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
N
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
N
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
N
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
Y
39
N
sing
Y
40
N
doub
N
41
N
sing
Y
42
N
doub
N
43
N
sing
N
44
N
sing
Y
45
N
sing
Y
46
N
doub
N
47
N
sing
Y
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
Y
107
N
sing
Y
108
N
sing
Y
109
N
doub
N
110
N
sing
Y
111
N
sing
N
112
N
sing
Y
113
N
doub
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
431
440
10.1107/S0907444901021709
11856828
Description of ordered solvent molecules in a platinated decanucleotide duplex refined at 1.6A resolution against experimental MAD phases.
2002
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
27
1837
1846
10.1093/nar/27.8.1837
Crystal Structure of a Double-Stranded DNA Containing A Cisplatin Interstrand Cross-Link At 1.63 Angstrom Resolution: Hydration At The Platinated Site
1999
10.2210/pdb1i1p/pdb
pdb_00001i1p
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-11-01
MARRESEARCH
DOUBLE CRYSTAL
MAD
M
x-ray
1
1.0906
1.0
1.0718
1.0
1.0711
1.0
1.0301
1.0
DW21B
LURE
1.0906,1.0718,1.0711,1.0301
SYNCHROTRON
LURE BEAMLINE DW21B
2931.917
5'-D(*CP*CP*TP*CP*GP*CP*TP*CP*TP*C)-3'
1
syn
polymer
3159.079
5'-D(*GP*AP*GP*AP*GP*CP*GP*AP*GP*G)-3'
1
syn
polymer
300.045
Cisplatin
1
syn
non-polymer
202.340
SPERMINE
1
syn
non-polymer
18.015
water
135
nat
water
no
no
(DC)(DC)(DT)(DC)(DG)(DC)(DT)(DC)(DT)(DC)
CCTCGCTCTC
A
polydeoxyribonucleotide
no
no
(DG)(DA)(DG)(DA)(DG)(DC)(DG)(DA)(DG)(DG)
GAGAGCGAGG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.34
47.43
VAPOR DIFFUSION, HANGING DROP
6.2
sodium cacodylate, NaCl, KCl, spermine, MPD, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
sodium cacodylate
1
NaCl
1
KCl
1
spermine
1
MPD
1
sodium cacodylate
2
NaCl
2
KCl
2
MPD
2
-8.945
1
19
A
1
B
20
-0.505
A_DC1:DG20_B
1
-12.537
0.296
0.207
-0.121
-6.779
1
19
A
2
B
19
-1.096
A_DC2:DG19_B
2
-11.501
0.099
0.404
-0.102
-1.345
1
20
A
3
B
18
4.791
A_DT3:DA18_B
3
-5.984
-0.143
-0.024
-0.055
12.739
1
19
A
4
B
17
-1.726
A_DC4:DG17_B
4
2.844
0.286
-0.292
-0.127
-9.941
1
20
A
7
B
14
2.685
A_DT7:DA14_B
5
-11.031
-0.122
0.125
-0.079
-9.872
1
19
A
8
B
13
-0.011
A_DC8:DG13_B
6
-9.137
0.261
0.093
-0.181
-8.651
1
20
A
9
B
12
-1.794
A_DT9:DA12_B
7
-5.986
-0.276
0.082
-0.164
-0.477
1
19
A
10
B
11
-1.841
A_DC10:DG11_B
8
-5.401
0.262
-0.254
-0.203
3.269
36.132
A
A
1
2
2.503
B
B
20
19
3.325
1.552
0.631
-1.300
AA_DC1DC2:DG19DG20_BB
1
0.021
-0.034
36.100
-2.317
-1.014
2.835
21.853
A
A
2
3
6.494
B
B
19
18
3.268
2.442
-1.300
-1.029
AA_DC2DT3:DA18DG19_BB
2
4.113
-10.934
21.329
-3.614
4.945
2.875
27.784
A
A
3
4
31.920
B
B
18
17
3.180
14.482
-0.776
0.714
AA_DT3DC4:DG17DA18_BB
3
5.445
-12.002
23.148
-2.045
2.944
3.208
38.114
A
A
7
8
2.584
B
B
14
13
3.208
1.687
-0.412
-0.111
AA_DT7DC8:DG13DA14_BB
4
-0.786
1.204
38.070
-0.380
0.533
3.285
34.003
A
A
8
9
3.550
B
B
13
12
3.224
2.072
0.838
0.036
AA_DC8DT9:DA12DG13_BB
5
3.266
-5.596
33.788
-0.269
-0.912
3.119
31.895
A
A
9
10
1.099
B
B
12
11
3.141
0.603
-0.030
-0.058
AA_DT9DC10:DG11DA12_BB
6
3.419
-6.234
31.710
-0.211
0.652
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-06-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2001-02-02
REL
REL
CPT
Cisplatin
SPM
SPERMINE
HOH
water
CPT
221
3
CPT
CPT
221
A
SPM
222
4
SPM
SPM
222
B
HOH
2
5
HOH
HOH
222
A
HOH
3
5
HOH
HOH
223
A
HOH
4
5
HOH
HOH
224
A
HOH
5
5
HOH
HOH
225
A
HOH
7
5
HOH
HOH
226
A
HOH
11
5
HOH
HOH
227
A
HOH
13
5
HOH
HOH
228
A
HOH
15
5
HOH
HOH
229
A
HOH
19
5
HOH
HOH
230
A
HOH
20
5
HOH
HOH
231
A
HOH
22
5
HOH
HOH
232
A
HOH
23
5
HOH
HOH
233
A
HOH
24
5
HOH
HOH
234
A
HOH
28
5
HOH
HOH
235
A
HOH
29
5
HOH
HOH
236
A
HOH
34
5
HOH
HOH
237
A
HOH
35
5
HOH
HOH
238
A
HOH
36
5
HOH
HOH
239
A
HOH
37
5
HOH
HOH
240
A
HOH
41
5
HOH
HOH
241
A
HOH
42
5
HOH
HOH
242
A
HOH
44
5
HOH
HOH
243
A
HOH
45
5
HOH
HOH
244
A
HOH
46
5
HOH
HOH
245
A
HOH
47
5
HOH
HOH
246
A
HOH
48
5
HOH
HOH
247
A
HOH
53
5
HOH
HOH
248
A
HOH
55
5
HOH
HOH
249
A
HOH
56
5
HOH
HOH
250
A
HOH
57
5
HOH
HOH
251
A
HOH
59
5
HOH
HOH
252
A
HOH
60
5
HOH
HOH
253
A
HOH
63
5
HOH
HOH
254
A
HOH
69
5
HOH
HOH
255
A
HOH
73
5
HOH
HOH
256
A
HOH
75
5
HOH
HOH
257
A
HOH
78
5
HOH
HOH
258
A
HOH
84
5
HOH
HOH
259
A
HOH
85
5
HOH
HOH
260
A
HOH
87
5
HOH
HOH
261
A
HOH
88
5
HOH
HOH
262
A
HOH
94
5
HOH
HOH
263
A
HOH
97
5
HOH
HOH
264
A
HOH
99
5
HOH
HOH
265
A
HOH
102
5
HOH
HOH
266
A
HOH
108
5
HOH
HOH
267
A
HOH
110
5
HOH
HOH
268
A
HOH
117
5
HOH
HOH
269
A
HOH
120
5
HOH
HOH
270
A
HOH
123
5
HOH
HOH
271
A
HOH
129
5
HOH
HOH
272
A
HOH
132
5
HOH
HOH
273
A
HOH
135
5
HOH
HOH
274
A
HOH
139
5
HOH
HOH
275
A
HOH
6
5
HOH
HOH
223
B
HOH
8
5
HOH
HOH
224
B
HOH
9
5
HOH
HOH
225
B
HOH
10
5
HOH
HOH
226
B
HOH
12
5
HOH
HOH
227
B
HOH
14
5
HOH
HOH
228
B
HOH
16
5
HOH
HOH
229
B
HOH
17
5
HOH
HOH
230
B
HOH
18
5
HOH
HOH
231
B
HOH
21
5
HOH
HOH
232
B
HOH
25
5
HOH
HOH
233
B
HOH
26
5
HOH
HOH
234
B
HOH
27
5
HOH
HOH
235
B
HOH
30
5
HOH
HOH
236
B
HOH
31
5
HOH
HOH
237
B
HOH
32
5
HOH
HOH
238
B
HOH
33
5
HOH
HOH
239
B
HOH
38
5
HOH
HOH
240
B
HOH
39
5
HOH
HOH
241
B
HOH
40
5
HOH
HOH
242
B
HOH
43
5
HOH
HOH
243
B
HOH
49
5
HOH
HOH
244
B
HOH
50
5
HOH
HOH
245
B
HOH
51
5
HOH
HOH
246
B
HOH
52
5
HOH
HOH
247
B
HOH
54
5
HOH
HOH
248
B
HOH
58
5
HOH
HOH
249
B
HOH
61
5
HOH
HOH
250
B
HOH
62
5
HOH
HOH
251
B
HOH
64
5
HOH
HOH
252
B
HOH
65
5
HOH
HOH
253
B
HOH
66
5
HOH
HOH
254
B
HOH
67
5
HOH
HOH
255
B
HOH
68
5
HOH
HOH
256
B
HOH
70
5
HOH
HOH
257
B
HOH
71
5
HOH
HOH
258
B
HOH
72
5
HOH
HOH
259
B
HOH
74
5
HOH
HOH
260
B
HOH
76
5
HOH
HOH
261
B
HOH
77
5
HOH
HOH
262
B
HOH
79
5
HOH
HOH
263
B
HOH
80
5
HOH
HOH
264
B
HOH
81
5
HOH
HOH
265
B
HOH
82
5
HOH
HOH
266
B
HOH
83
5
HOH
HOH
267
B
HOH
86
5
HOH
HOH
268
B
HOH
89
5
HOH
HOH
269
B
HOH
90
5
HOH
HOH
270
B
HOH
91
5
HOH
HOH
271
B
HOH
92
5
HOH
HOH
272
B
HOH
93
5
HOH
HOH
273
B
HOH
95
5
HOH
HOH
274
B
HOH
96
5
HOH
HOH
275
B
HOH
98
5
HOH
HOH
276
B
HOH
100
5
HOH
HOH
277
B
HOH
101
5
HOH
HOH
278
B
HOH
103
5
HOH
HOH
279
B
HOH
105
5
HOH
HOH
280
B
HOH
106
5
HOH
HOH
281
B
HOH
107
5
HOH
HOH
282
B
HOH
109
5
HOH
HOH
283
B
HOH
111
5
HOH
HOH
284
B
HOH
112
5
HOH
HOH
285
B
HOH
113
5
HOH
HOH
286
B
HOH
114
5
HOH
HOH
287
B
HOH
115
5
HOH
HOH
288
B
HOH
116
5
HOH
HOH
289
B
HOH
118
5
HOH
HOH
290
B
HOH
119
5
HOH
HOH
291
B
HOH
121
5
HOH
HOH
292
B
HOH
124
5
HOH
HOH
293
B
HOH
125
5
HOH
HOH
294
B
HOH
126
5
HOH
HOH
295
B
HOH
127
5
HOH
HOH
296
B
HOH
128
5
HOH
HOH
297
B
HOH
130
5
HOH
HOH
298
B
HOH
131
5
HOH
HOH
299
B
HOH
133
5
HOH
HOH
300
B
HOH
134
5
HOH
HOH
301
B
HOH
136
5
HOH
HOH
302
B
HOH
138
5
HOH
HOH
303
B
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
T
3
n
3
DT
3
A
C
4
n
4
DC
4
A
+G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
T
7
n
7
DT
7
A
C
8
n
8
DC
8
A
T
9
n
9
DT
9
A
C
10
n
10
DC
10
A
G
11
n
1
DG
11
B
A
12
n
2
DA
12
B
G
13
n
3
DG
13
B
A
14
n
4
DA
14
B
+G
15
n
5
DG
15
B
C
16
n
6
DC
16
B
G
17
n
7
DG
17
B
A
18
n
8
DA
18
B
G
19
n
9
DG
19
B
G
20
n
10
DG
20
B
author_defined_assembly
2
dimeric
A
DG
5
A
N7
DG
5
1_555
A
CPT
221
C
PT1
CPT
1_555
A
CPT
221
C
N1
CPT
1_555
90.5
A
DG
5
A
N7
DG
5
1_555
A
CPT
221
C
PT1
CPT
1_555
A
CPT
221
C
N2
CPT
1_555
174.5
A
CPT
221
C
N1
CPT
1_555
A
CPT
221
C
PT1
CPT
1_555
A
CPT
221
C
N2
CPT
1_555
85.3
A
DG
5
A
N7
DG
5
1_555
A
CPT
221
C
PT1
CPT
1_555
B
DG
15
B
N7
DG
5
1_555
86.4
A
CPT
221
C
N1
CPT
1_555
A
CPT
221
C
PT1
CPT
1_555
B
DG
15
B
N7
DG
5
1_555
176.5
A
CPT
221
C
N2
CPT
1_555
A
CPT
221
C
PT1
CPT
1_555
B
DG
15
B
N7
DG
5
1_555
97.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
N1
SPM
222
D
N1
SPM
1
1
N
1
B
C2
SPM
222
D
C2
SPM
1
1
N
1
A
A
O
O
HOH
HOH
263
272
2.11
1
-4.92
0.80
109.40
104.48
A
A
A
O5'
C5'
C4'
DC
DC
DC
1
1
1
N
1
-2.98
0.40
104.50
101.52
A
A
A
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
4.99
0.70
118.00
122.99
A
A
A
N3
C4
N4
DC
DC
DC
2
2
2
N
1
19.56
1.10
110.50
130.06
A
A
A
O3'
P
OP2
DT
DC
DC
3
4
4
Y
1
-6.78
0.80
109.40
102.62
A
A
A
O5'
C5'
C4'
DG
DG
DG
5
5
5
N
1
-2.63
0.40
110.80
108.17
A
A
A
C4
C5
N7
DG
DG
DG
5
5
5
N
1
2.74
0.40
105.40
108.14
A
A
A
N9
C4
C5
DG
DG
DG
5
5
5
N
1
-3.93
0.60
119.90
115.97
A
A
A
N1
C6
O6
DG
DG
DG
5
5
5
N
1
3.15
0.50
121.30
124.45
A
A
A
C6
N1
C2
DT
DT
DT
7
7
7
N
1
-4.73
0.60
123.70
118.97
A
A
A
C5
C6
N1
DT
DT
DT
7
7
7
N
1
7.61
1.10
110.50
118.11
A
A
A
O3'
P
OP2
DT
DC
DC
7
8
8
Y
1
-4.86
0.70
108.00
103.14
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
7.80
1.10
110.50
118.30
A
A
A
O3'
P
OP2
DC
DT
DT
8
9
9
Y
1
10.78
1.10
110.50
121.28
A
A
A
O3'
P
OP2
DT
DC
DC
9
10
10
Y
1
-5.92
0.80
102.40
96.48
B
B
B
C3'
C2'
C1'
DA
DA
DA
12
12
12
N
1
5.56
0.60
118.60
124.16
B
B
B
C6
N1
C2
DA
DA
DA
12
12
12
N
1
-4.86
0.50
129.30
124.44
B
B
B
N1
C2
N3
DA
DA
DA
12
12
12
N
1
3.75
0.60
118.60
122.35
B
B
B
N1
C6
N6
DA
DA
DA
12
12
12
N
1
9.82
1.50
119.60
129.42
B
B
B
OP1
P
OP2
DA
DA
DA
14
14
14
N
1
-5.12
0.80
109.40
104.28
B
B
B
O5'
C5'
C4'
DG
DG
DG
15
15
15
N
1
-5.46
0.70
108.00
102.54
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
1
3.09
0.30
108.30
111.39
B
B
B
O4'
C1'
N9
DA
DA
DA
18
18
18
N
0.1880000
0.1590000
1.63
20
340
7353
7322
RANDOM
1
MAD
Hendrikson & Konnert
1.63
20
135
554
15
404
0
1.63
20
1I1P
7353
7333
1
4
0.0370000
1
14
3.5
93.1
0.0700000
1.63
1.72
1
3.4
97
phasing
SHARP
refinement
REFMAC
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
REFINEMENT INCLUDING EXPERIMENTAL MAD PHASES ALLOWS AN EXHAUSTIVE STUDY OF ORDERED SOLVENT MOLECULES FOR A PLATINATED DECANUCLEOTIDE
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
metalc
2.010
A
DG
5
A
N7
DG
5
1_555
A
CPT
221
C
PT1
CPT
1_555
metalc
1.991
A
CPT
221
C
PT1
CPT
1_555
B
DG
15
B
N7
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
19
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
19
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
19
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
18
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
18
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
B
DG
17
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
B
DG
17
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
B
DG
17
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
14
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
14
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
13
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
13
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
13
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
12
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
12
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
11
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
11
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
11
B
N2
DG
1
1_555
DNA
ANTITUMOR DRUG, CIS-DDP, INTERSTRAND CROSS-LINK, DEOXYRIBONUCLEIC ACID, SPERMINE, DNA
1I1P
PDB
1
1I1P
1I1P
PDB
2
1I1P
1
10
1I1P
1
10
1I1P
A
1
1
10
11
20
1I1P
11
20
1I1P
B
2
1
10
BINDING SITE FOR RESIDUE CPT A 221
A
CPT
221
Software
8
BINDING SITE FOR RESIDUE SPM B 222
B
SPM
222
Software
6
A
DG
5
A
DG
5
8
1_555
A
DT
7
A
DT
7
8
1_555
A
DC
8
A
DC
8
8
1_555
A
HOH
235
E
HOH
8
1_555
A
HOH
249
E
HOH
8
1_555
A
HOH
259
E
HOH
8
1_555
B
DG
15
B
DG
5
8
1_555
B
HOH
233
F
HOH
8
1_555
A
DC
2
A
DC
2
6
4_557
A
DT
3
A
DT
3
6
4_557
B
DC
16
B
DC
6
6
1_555
B
DG
17
B
DG
7
6
1_555
B
HOH
263
F
HOH
6
1_555
B
HOH
269
F
HOH
6
1_555
5
C 1 2 1