0.029782
-0.008137
-0.004581
0.000000
0.026662
-0.002001
0.000000
0.000000
0.018528
0.00000
0.00000
0.00000
Smolinskaya, Y.
Nikonov, S.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
83.32
80.14
74.72
33.577
38.881
54.936
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C5 H10 O
86.132
PENTANAL
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
UK
Structure
STRUE6
2005
0969-2126
8
363
371
10.1016/S0969-2126(00)00116-7
10801481
Archaeal ribosomal protein L1: the structure provides new insights into RNA binding of the L1 protein family.
2000
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
58
1023
1029
10.1107/S0907444902006157
12037305
Structure of ribosomal protein L1 from Methanococcus thermolithotrophicus. Functionally important structural invariants on the L1 surface.
2002
10.2210/pdb1i2a/pdb
pdb_00001i2a
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1999-12-17
MARRESEARCH
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.009
1.0
I711
MAX II
1.009
SYNCHROTRON
MAX II BEAMLINE I711
24842.496
50S RIBOSOMAL PROTEIN L1P
1
man
polymer
86.132
PENTANAL
1
syn
non-polymer
18.015
water
185
nat
water
no
no
MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVI
RKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYF
QVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVKKEKAKKK
MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVI
RKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYF
QVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVKKEKAKKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanocaldococcus
Escherichia
Escherichia coli
sample
RPLA
2190
Methanocaldococcus jannaschii
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET11A-MJAL1
1
3.02
60.0
VAPOR DIFFUSION, HANGING DROP
7.5
PEG 10000, HEPES-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 301.5K
301.5
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2003-12-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2011-08-31
1
4
2014-03-12
1
5
2018-03-07
1
6
2023-08-09
_diffrn_source.pdbx_synchrotron_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1CJS IS the L1 protein with lower resolution.
RCSB
Y
RCSB
2001-02-07
REL
REL
PTL
PENTANAL
HOH
water
1CJS
PDB ENTRY 1CJS
PDB
experimental model
ALD
213
2
PTL
PTL
220
A
HOH
214
3
HOH
HOH
221
A
HOH
215
3
HOH
HOH
222
A
HOH
216
3
HOH
HOH
223
A
HOH
217
3
HOH
HOH
224
A
HOH
218
3
HOH
HOH
225
A
HOH
219
3
HOH
HOH
226
A
HOH
220
3
HOH
HOH
227
A
HOH
221
3
HOH
HOH
228
A
HOH
222
3
HOH
HOH
229
A
HOH
223
3
HOH
HOH
230
A
HOH
224
3
HOH
HOH
231
A
HOH
225
3
HOH
HOH
232
A
HOH
226
3
HOH
HOH
233
A
HOH
227
3
HOH
HOH
234
A
HOH
228
3
HOH
HOH
235
A
HOH
229
3
HOH
HOH
236
A
HOH
230
3
HOH
HOH
237
A
HOH
231
3
HOH
HOH
238
A
HOH
232
3
HOH
HOH
239
A
HOH
233
3
HOH
HOH
240
A
HOH
234
3
HOH
HOH
241
A
HOH
235
3
HOH
HOH
242
A
HOH
236
3
HOH
HOH
243
A
HOH
237
3
HOH
HOH
244
A
HOH
238
3
HOH
HOH
245
A
HOH
239
3
HOH
HOH
246
A
HOH
240
3
HOH
HOH
247
A
HOH
241
3
HOH
HOH
248
A
HOH
242
3
HOH
HOH
249
A
HOH
243
3
HOH
HOH
250
A
HOH
244
3
HOH
HOH
251
A
HOH
245
3
HOH
HOH
252
A
HOH
246
3
HOH
HOH
253
A
HOH
247
3
HOH
HOH
254
A
HOH
248
3
HOH
HOH
255
A
HOH
249
3
HOH
HOH
256
A
HOH
250
3
HOH
HOH
257
A
HOH
251
3
HOH
HOH
258
A
HOH
252
3
HOH
HOH
259
A
HOH
253
3
HOH
HOH
260
A
HOH
254
3
HOH
HOH
261
A
HOH
255
3
HOH
HOH
262
A
HOH
256
3
HOH
HOH
263
A
HOH
257
3
HOH
HOH
264
A
HOH
258
3
HOH
HOH
265
A
HOH
259
3
HOH
HOH
266
A
HOH
260
3
HOH
HOH
267
A
HOH
261
3
HOH
HOH
268
A
HOH
262
3
HOH
HOH
269
A
HOH
263
3
HOH
HOH
270
A
HOH
264
3
HOH
HOH
271
A
HOH
265
3
HOH
HOH
272
A
HOH
266
3
HOH
HOH
273
A
HOH
267
3
HOH
HOH
274
A
HOH
268
3
HOH
HOH
275
A
HOH
269
3
HOH
HOH
276
A
HOH
270
3
HOH
HOH
277
A
HOH
271
3
HOH
HOH
278
A
HOH
272
3
HOH
HOH
279
A
HOH
273
3
HOH
HOH
280
A
HOH
274
3
HOH
HOH
281
A
HOH
275
3
HOH
HOH
282
A
HOH
276
3
HOH
HOH
283
A
HOH
277
3
HOH
HOH
284
A
HOH
278
3
HOH
HOH
285
A
HOH
279
3
HOH
HOH
286
A
HOH
280
3
HOH
HOH
287
A
HOH
281
3
HOH
HOH
288
A
HOH
282
3
HOH
HOH
289
A
HOH
283
3
HOH
HOH
290
A
HOH
284
3
HOH
HOH
291
A
HOH
285
3
HOH
HOH
292
A
HOH
286
3
HOH
HOH
293
A
HOH
287
3
HOH
HOH
294
A
HOH
288
3
HOH
HOH
295
A
HOH
289
3
HOH
HOH
296
A
HOH
290
3
HOH
HOH
297
A
HOH
291
3
HOH
HOH
298
A
HOH
292
3
HOH
HOH
299
A
HOH
293
3
HOH
HOH
300
A
HOH
294
3
HOH
HOH
301
A
HOH
295
3
HOH
HOH
302
A
HOH
296
3
HOH
HOH
303
A
HOH
297
3
HOH
HOH
304
A
HOH
298
3
HOH
HOH
305
A
HOH
299
3
HOH
HOH
306
A
HOH
300
3
HOH
HOH
307
A
HOH
301
3
HOH
HOH
308
A
HOH
302
3
HOH
HOH
309
A
HOH
303
3
HOH
HOH
310
A
HOH
304
3
HOH
HOH
311
A
HOH
305
3
HOH
HOH
312
A
HOH
306
3
HOH
HOH
313
A
HOH
307
3
HOH
HOH
314
A
HOH
308
3
HOH
HOH
315
A
HOH
309
3
HOH
HOH
316
A
HOH
310
3
HOH
HOH
317
A
HOH
311
3
HOH
HOH
318
A
HOH
312
3
HOH
HOH
319
A
HOH
313
3
HOH
HOH
320
A
HOH
314
3
HOH
HOH
321
A
HOH
315
3
HOH
HOH
322
A
HOH
316
3
HOH
HOH
323
A
HOH
317
3
HOH
HOH
324
A
HOH
318
3
HOH
HOH
325
A
HOH
319
3
HOH
HOH
326
A
HOH
320
3
HOH
HOH
327
A
HOH
321
3
HOH
HOH
328
A
HOH
322
3
HOH
HOH
329
A
HOH
323
3
HOH
HOH
330
A
HOH
324
3
HOH
HOH
331
A
HOH
325
3
HOH
HOH
332
A
HOH
326
3
HOH
HOH
333
A
HOH
327
3
HOH
HOH
334
A
HOH
328
3
HOH
HOH
335
A
HOH
329
3
HOH
HOH
336
A
HOH
330
3
HOH
HOH
337
A
HOH
331
3
HOH
HOH
338
A
HOH
332
3
HOH
HOH
339
A
HOH
333
3
HOH
HOH
340
A
HOH
334
3
HOH
HOH
341
A
HOH
335
3
HOH
HOH
342
A
HOH
336
3
HOH
HOH
343
A
HOH
337
3
HOH
HOH
344
A
HOH
338
3
HOH
HOH
345
A
HOH
339
3
HOH
HOH
346
A
HOH
340
3
HOH
HOH
347
A
HOH
341
3
HOH
HOH
348
A
HOH
342
3
HOH
HOH
349
A
HOH
343
3
HOH
HOH
350
A
HOH
344
3
HOH
HOH
351
A
HOH
345
3
HOH
HOH
352
A
HOH
346
3
HOH
HOH
353
A
HOH
347
3
HOH
HOH
354
A
HOH
348
3
HOH
HOH
355
A
HOH
349
3
HOH
HOH
356
A
HOH
350
3
HOH
HOH
357
A
HOH
351
3
HOH
HOH
358
A
HOH
352
3
HOH
HOH
359
A
HOH
353
3
HOH
HOH
360
A
HOH
354
3
HOH
HOH
361
A
HOH
355
3
HOH
HOH
362
A
HOH
356
3
HOH
HOH
363
A
HOH
357
3
HOH
HOH
364
A
HOH
358
3
HOH
HOH
365
A
HOH
359
3
HOH
HOH
366
A
HOH
360
3
HOH
HOH
367
A
HOH
361
3
HOH
HOH
368
A
HOH
362
3
HOH
HOH
369
A
HOH
363
3
HOH
HOH
370
A
HOH
364
3
HOH
HOH
371
A
HOH
365
3
HOH
HOH
372
A
HOH
366
3
HOH
HOH
373
A
HOH
367
3
HOH
HOH
374
A
HOH
368
3
HOH
HOH
375
A
HOH
369
3
HOH
HOH
376
A
HOH
370
3
HOH
HOH
377
A
HOH
371
3
HOH
HOH
378
A
HOH
372
3
HOH
HOH
379
A
HOH
373
3
HOH
HOH
380
A
HOH
374
3
HOH
HOH
381
A
HOH
375
3
HOH
HOH
382
A
HOH
376
3
HOH
HOH
383
A
HOH
377
3
HOH
HOH
384
A
HOH
378
3
HOH
HOH
385
A
HOH
379
3
HOH
HOH
386
A
HOH
380
3
HOH
HOH
387
A
HOH
381
3
HOH
HOH
388
A
HOH
382
3
HOH
HOH
389
A
HOH
383
3
HOH
HOH
390
A
HOH
384
3
HOH
HOH
391
A
HOH
385
3
HOH
HOH
392
A
HOH
386
3
HOH
HOH
393
A
HOH
387
3
HOH
HOH
394
A
HOH
388
3
HOH
HOH
395
A
HOH
389
3
HOH
HOH
396
A
HOH
390
3
HOH
HOH
397
A
HOH
391
3
HOH
HOH
398
A
HOH
392
3
HOH
HOH
399
A
HOH
393
3
HOH
HOH
400
A
HOH
394
3
HOH
HOH
401
A
HOH
395
3
HOH
HOH
402
A
HOH
396
3
HOH
HOH
403
A
HOH
397
3
HOH
HOH
404
A
HOH
398
3
HOH
HOH
405
A
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
ARG
3
n
3
ARG
3
A
GLU
4
n
4
GLU
4
A
ALA
5
n
5
ALA
5
A
LEU
6
n
6
LEU
6
A
LEU
7
n
7
LEU
7
A
GLN
8
n
8
GLN
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
LYS
11
n
11
LYS
11
A
GLU
12
n
12
GLU
12
A
ALA
13
n
13
ALA
13
A
ARG
14
n
14
ARG
14
A
GLU
15
n
15
GLU
15
A
LEU
16
n
16
LEU
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
PRO
19
n
19
PRO
19
A
ARG
20
n
20
ARG
20
A
ASN
21
n
21
ASN
21
A
PHE
22
n
22
PHE
22
A
THR
23
n
23
THR
23
A
GLN
24
n
24
GLN
24
A
SER
25
n
25
SER
25
A
PHE
26
n
26
PHE
26
A
GLU
27
n
27
GLU
27
A
PHE
28
n
28
PHE
28
A
ILE
29
n
29
ILE
29
A
ALA
30
n
30
ALA
30
A
THR
31
n
31
THR
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
ILE
35
n
35
ILE
35
A
ASP
36
n
36
ASP
36
A
MET
37
n
37
MET
37
A
ARG
38
n
38
ARG
38
A
LYS
39
n
39
LYS
39
A
PRO
40
n
40
PRO
40
A
GLU
41
n
41
GLU
41
A
ASN
42
n
42
ASN
42
A
ARG
43
n
43
ARG
43
A
ILE
44
n
44
ILE
44
A
LYS
45
n
45
LYS
45
A
THR
46
n
46
THR
46
A
GLU
47
n
47
GLU
47
A
VAL
48
n
48
VAL
48
A
VAL
49
n
49
VAL
49
A
LEU
50
n
50
LEU
50
A
PRO
51
n
51
PRO
51
A
HIS
52
n
52
HIS
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
GLY
55
n
55
GLY
55
A
LYS
56
n
56
LYS
56
A
GLU
57
n
57
GLU
57
A
ALA
58
n
58
ALA
58
A
LYS
59
n
59
LYS
59
A
ILE
60
n
60
ILE
60
A
ALA
61
n
61
ALA
61
A
VAL
62
n
62
VAL
62
A
ILE
63
n
63
ILE
63
A
GLY
64
n
64
GLY
64
A
THR
65
n
65
THR
65
A
GLY
66
n
66
GLY
66
A
ASP
67
n
67
ASP
67
A
LEU
68
n
68
LEU
68
A
ALA
69
n
69
ALA
69
A
LYS
70
n
70
LYS
70
A
GLN
71
n
71
GLN
71
A
ALA
72
n
72
ALA
72
A
GLU
73
n
73
GLU
73
A
GLU
74
n
74
GLU
74
A
LEU
75
n
75
LEU
75
A
GLY
76
n
76
GLY
76
A
LEU
77
n
77
LEU
77
A
THR
78
n
78
THR
78
A
VAL
79
n
79
VAL
79
A
ILE
80
n
80
ILE
80
A
ARG
81
n
81
ARG
81
A
LYS
82
n
82
LYS
82
A
GLU
83
n
83
GLU
83
A
GLU
84
n
84
GLU
84
A
ILE
85
n
85
ILE
85
A
GLU
86
n
86
GLU
86
A
GLU
87
n
87
GLU
87
A
LEU
88
n
88
LEU
88
A
GLY
89
n
89
GLY
89
A
LYS
90
n
90
LYS
90
A
ASN
91
n
91
ASN
91
A
LYS
92
n
92
LYS
92
A
ARG
93
n
93
ARG
93
A
LYS
94
n
94
LYS
94
A
LEU
95
n
95
LEU
95
A
ARG
96
n
96
ARG
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
ALA
99
n
99
ALA
99
A
LYS
100
n
100
LYS
100
A
ALA
101
n
101
ALA
101
A
HIS
102
n
102
HIS
102
A
ASP
103
n
103
ASP
103
A
PHE
104
n
104
PHE
104
A
PHE
105
n
105
PHE
105
A
ILE
106
n
106
ILE
106
A
ALA
107
n
107
ALA
107
A
GLN
108
n
108
GLN
108
A
ALA
109
n
109
ALA
109
A
ASP
110
n
110
ASP
110
A
LEU
111
n
111
LEU
111
A
MET
112
n
112
MET
112
A
PRO
113
n
113
PRO
113
A
LEU
114
n
114
LEU
114
A
ILE
115
n
115
ILE
115
A
GLY
116
n
116
GLY
116
A
ARG
117
n
117
ARG
117
A
TYR
118
n
118
TYR
118
A
MET
119
n
119
MET
119
A
GLY
120
n
120
GLY
120
A
VAL
121
n
121
VAL
121
A
ILE
122
n
122
ILE
122
A
LEU
123
n
123
LEU
123
A
GLY
124
n
124
GLY
124
A
PRO
125
n
125
PRO
125
A
ARG
126
n
126
ARG
126
A
GLY
127
n
127
GLY
127
A
LYS
128
n
128
LYS
128
A
MET
129
n
129
MET
129
A
PRO
130
n
130
PRO
130
A
LYS
131
n
131
LYS
131
A
PRO
132
n
132
PRO
132
A
VAL
133
n
133
VAL
133
A
PRO
134
n
134
PRO
134
A
ALA
135
n
135
ALA
135
A
ASN
136
n
136
ASN
136
A
ALA
137
n
137
ALA
137
A
ASN
138
n
138
ASN
138
A
ILE
139
n
139
ILE
139
A
LYS
140
n
140
LYS
140
A
PRO
141
n
141
PRO
141
A
LEU
142
n
142
LEU
142
A
VAL
143
n
143
VAL
143
A
GLU
144
n
144
GLU
144
A
ARG
145
n
145
ARG
145
A
LEU
146
n
146
LEU
146
A
LYS
147
n
147
LYS
147
A
LYS
148
n
148
LYS
148
A
THR
149
n
149
THR
149
A
VAL
150
n
150
VAL
150
A
VAL
151
n
151
VAL
151
A
ILE
152
n
152
ILE
152
A
ASN
153
n
153
ASN
153
A
THR
154
n
154
THR
154
A
ARG
155
n
155
ARG
155
A
ASP
156
n
156
ASP
156
A
LYS
157
n
157
LYS
157
A
PRO
158
n
158
PRO
158
A
TYR
159
n
159
TYR
159
A
PHE
160
n
160
PHE
160
A
GLN
161
n
161
GLN
161
A
VAL
162
n
162
VAL
162
A
LEU
163
n
163
LEU
163
A
VAL
164
n
164
VAL
164
A
GLY
165
n
165
GLY
165
A
ASN
166
n
166
ASN
166
A
GLU
167
n
167
GLU
167
A
LYS
168
n
168
LYS
168
A
MET
169
n
169
MET
169
A
THR
170
n
170
THR
170
A
ASP
171
n
171
ASP
171
A
GLU
172
n
172
GLU
172
A
GLN
173
n
173
GLN
173
A
ILE
174
n
174
ILE
174
A
VAL
175
n
175
VAL
175
A
ASP
176
n
176
ASP
176
A
ASN
177
n
177
ASN
177
A
ILE
178
n
178
ILE
178
A
GLU
179
n
179
GLU
179
A
ALA
180
n
180
ALA
180
A
VAL
181
n
181
VAL
181
A
LEU
182
n
182
LEU
182
A
ASN
183
n
183
ASN
183
A
VAL
184
n
184
VAL
184
A
VAL
185
n
185
VAL
185
A
ALA
186
n
186
ALA
186
A
LYS
187
n
187
LYS
187
A
LYS
188
n
188
LYS
188
A
TYR
189
n
189
TYR
189
A
GLU
190
n
190
GLU
190
A
LYS
191
n
191
LYS
191
A
GLY
192
n
192
GLY
192
A
LEU
193
n
193
LEU
193
A
TYR
194
n
194
TYR
194
A
HIS
195
n
195
HIS
195
A
ILE
196
n
196
ILE
196
A
LYS
197
n
197
LYS
197
A
ASP
198
n
198
ASP
198
A
ALA
199
n
199
ALA
199
A
TYR
200
n
200
TYR
200
A
VAL
201
n
201
VAL
201
A
LYS
202
n
202
LYS
202
A
LEU
203
n
203
LEU
203
A
THR
204
n
204
THR
204
A
MET
205
n
205
MET
205
A
GLY
206
n
206
GLY
206
A
PRO
207
n
207
PRO
207
A
ALA
208
n
208
ALA
208
A
VAL
209
n
209
VAL
209
A
LYS
210
n
210
LYS
210
A
VAL
211
n
211
VAL
211
A
LYS
212
n
212
LYS
212
A
n
213
213
A
n
214
214
A
n
215
215
A
n
216
216
A
n
217
217
A
n
218
218
A
n
219
219
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
164
A
N
VAL
164
A
O
PHE
26
A
O
PHE
26
A
O
THR
31
A
O
THR
31
A
N
LYS
197
A
N
LYS
197
A
O
VAL
201
A
O
VAL
201
A
N
VAL
209
A
N
VAL
209
A
N
VAL
48
A
N
VAL
48
A
O
VAL
150
A
O
VAL
150
A
N
THR
78
A
N
THR
78
A
O
ILE
60
A
O
ILE
60
A
N
ALA
61
A
N
ALA
61
A
O
PHE
104
A
O
PHE
104
A
O
PHE
105
A
O
PHE
105
A
N
LYS
131
A
N
LYS
131
1
A
LYS
213
A
LYS
213
1
Y
1
A
GLU
214
A
GLU
214
1
Y
1
A
LYS
215
A
LYS
215
1
Y
1
A
ALA
216
A
ALA
216
1
Y
1
A
LYS
217
A
LYS
217
1
Y
1
A
LYS
218
A
LYS
218
1
Y
1
A
LYS
219
A
LYS
219
1
Y
1
3.67
0.50
120.30
123.97
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
54
54
54
N
1
3.65
0.50
120.30
123.95
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
155
155
155
N
1
A
ASN
21
-79.68
37.58
1
A
LYS
45
-151.33
77.72
1
A
ASN
91
-115.92
70.87
1
A
ARG
155
55.26
-138.24
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
ALD.TOP
ALD_OLD.PARAM
1.18
1.85
-0.83
2.27
0.48
-3.45
0.247
0.008
0.222
0.222
0.222
1.85
19.83
1078
23405
22327
4.8
99.5
RANDOM
673607.52
0.00
1
RESTRAINED
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
PDB ENTRY 1CJS
FLAT MODEL
56.13
0.376
0.28
0.25
5.00
0.17
0.20
1.85
19.83
185
1873
6
0
1682
0.007
1.4
22.0
0.85
3.21
1.50
4.86
2.00
5.76
2.00
8.51
2.50
0.279
0.022
0.298
1.97
166
3541
6
4.5
99.7
23.5
1.825
20
1I2A
188639
23155
0
0
0.088
1
15
3.520
94.8
0.309
1.825
2.0
1
3.41
87.1
data scaling
XDS
data reduction
XDS
refinement
CNS
phasing
CNS
CRYSTAL STRUCTURE OF L1 RIBOSOMAL PROTEIN FROM METHANOCOCCUS JANNASCHII WITH 1.85A RESOLUTION.
1
N
N
2
N
N
3
N
N
A
ASP
2
A
ASP
2
HELX_P
A
ALA
17
A
ALA
17
1
1
16
A
LYS
39
A
LYS
39
HELX_P
A
ARG
43
A
ARG
43
5
2
5
A
THR
65
A
THR
65
HELX_P
A
LEU
75
A
LEU
75
1
3
11
A
GLU
83
A
GLU
83
HELX_P
A
ASN
91
A
ASN
91
1
4
9
A
ASN
91
A
ASN
91
HELX_P
A
HIS
102
A
HIS
102
1
5
12
A
LEU
111
A
LEU
111
HELX_P
A
MET
119
A
MET
119
1
6
9
A
MET
119
A
MET
119
HELX_P
A
GLY
124
A
GLY
124
1
7
6
A
PRO
125
A
PRO
125
HELX_P
A
GLY
127
A
GLY
127
5
8
3
A
ILE
139
A
ILE
139
HELX_P
A
LYS
148
A
LYS
148
1
9
10
A
THR
170
A
THR
170
HELX_P
A
TYR
189
A
TYR
189
1
10
20
A
LYS
191
A
LYS
191
HELX_P
A
TYR
194
A
TYR
194
5
11
4
RIBOSOME
RIBOSOMAL PROTEIN, PRIMARY RRNA-BINDING PROTEIN, TRANSLATIONAL REPRESSOR, RIBOSOME
RL1_METJA
UNP
1
14
P54050
MDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVI
RKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYF
QVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVKKEKAKKK
14
232
1I2A
1
219
P54050
A
1
1
219
4
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
A
TYR
159
A
TYR
159
A
ASN
166
A
ASN
166
A
SER
25
A
SER
25
A
LEU
32
A
LEU
32
A
ILE
196
A
ILE
196
A
LEU
203
A
LEU
203
A
VAL
209
A
VAL
209
A
LYS
210
A
LYS
210
A
LYS
45
A
LYS
45
A
VAL
49
A
VAL
49
A
THR
149
A
THR
149
A
ASN
153
A
ASN
153
A
THR
78
A
THR
78
A
ILE
80
A
ILE
80
A
ILE
60
A
ILE
60
A
ILE
63
A
ILE
63
A
PHE
104
A
PHE
104
A
GLN
108
A
GLN
108
A
LYS
131
A
LYS
131
A
VAL
133
A
VAL
133
BINDING SITE FOR RESIDUE PTL A 220
A
PTL
220
Software
6
A
ARG
20
A
ARG
20
6
1_555
A
ASN
21
A
ASN
21
6
1_555
A
LYS
33
A
LYS
33
6
1_545
A
TYR
194
A
TYR
194
6
1_545
A
ILE
196
A
ILE
196
6
1_545
A
LYS
197
A
LYS
197
6
1_545
1
P 1