0.036114 -0.000000 0.000000 0.000000 0.020960 0.000000 0.000000 0.000000 0.008801 0.00000 0.00000 0.00000 Tereshko, V. Wallace, S. Usman, N. Wincott, F. Egli, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90 90 90 27.69 47.71 113.62 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C7 H19 N3 145.246 SPERMIDINE N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34) non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 N C N 84 R C Y 85 N N Y 86 N C Y 87 N N Y 88 N C Y 89 N C N 90 N N Y 91 N N Y 92 N C Y 93 N N Y 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N P N 111 N O N 112 N O N 113 N O N 114 N C N 115 R C N 116 N O N 117 S C N 118 N O N 119 N C N 120 R C N 121 N N N 122 N C N 123 N O N 124 N N N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 R C N 156 N O N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C N 162 N C N 163 N O N 164 N N N 165 N C N 166 N N N 167 N N Y 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N O N 184 N H N 185 N H N 186 N N N 187 N C N 188 N C N 189 N C N 190 N C N 191 N N N 192 N C N 193 N C N 194 N C N 195 N N N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N O N 216 N P N 217 N O N 218 N O N 219 N O N 220 N C N 221 R C N 222 N O N 223 S C N 224 N O N 225 R C N 226 N O N 227 R C N 228 N N N 229 N C N 230 N O N 231 N N N 232 N C N 233 N O N 234 N C N 235 N C N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing Y 99 N sing Y 100 N sing Y 101 N doub N 102 N sing Y 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N doub N 108 N sing N 109 N sing Y 110 N sing Y 111 N doub N 112 N sing Y 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing Y 175 N sing Y 176 N sing Y 177 N doub N 178 N sing Y 179 N sing N 180 N sing Y 181 N doub N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N doub N 254 N sing N 255 N sing UK RNA RNARFU 2122 1355-8382 7 405 420 10.1017/S1355838201001935 11333021 X-ray crystallographic observation of "in-line" and "adjacent" conformations in a bulged self-cleaving RNA/DNA hybrid. 2001 10.2210/pdb1i2x/pdb pdb_00001i2x 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1998-11-26 RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 3471.194 DNA/RNA (5'-R(*GP*CP*G)-D(P*AP*TP*AP*T)-R(P*AP*CP*GP*U)-3') 4 syn polymer 145.246 SPERMIDINE 1 syn non-polymer 18.015 water 79 nat water no no GCG(DA)(DT)(DA)(DT)ACGU GCGATATACGU A,B,D,C polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n n 1 2.68 54.07 VAPOR DIFFUSION, SITTING DROP 6.0 spermidine, MPD. pH 6.0, VAPOR DIFFUSION, SITTING DROP at 298 298 spermidine 1 MPD 1 MPD 2 8.302 28 B 21 A 11 -2.685 B_G21:U11_A 1 1.591 -2.559 0.555 -0.524 10.228 1 19 B 22 A 10 5.634 B_C22:G10_A 2 -26.596 0.009 -0.174 0.084 -17.693 1 19 B 23 A 9 1.736 B_G23:C9_A 3 -26.512 -0.110 -0.529 -0.121 -10.364 1 B 24 A 7 11.254 B_DA24:DT7_A 4 -18.296 -0.012 0.065 0.134 7.189 1 20 B 25 A 6 -0.363 B_DT25:DA6_A 5 -10.675 0.114 -0.572 -0.376 -8.521 1 20 B 26 A 5 -1.719 B_DA26:DT5_A 6 -8.529 -0.763 -0.755 -0.597 6.270 1 20 B 27 A 4 1.330 B_DT27:DA4_A 7 -9.029 -0.377 -0.262 -0.502 8.789 1 19 B 29 A 3 -8.424 B_C29:G3_A 8 -18.341 -0.015 -0.113 -0.343 1.153 1 19 B 30 A 2 -8.308 B_G30:C2_A 9 -15.922 0.244 0.353 0.061 -2.664 28 B 31 A 1 -3.908 B_U31:G1_A 10 0.739 2.538 0.139 -0.841 9.918 1 28 C 121 D 111 4.146 C_G121:U111_D 11 -7.615 -2.139 1.008 -0.372 5.076 1 19 C 122 D 110 1.551 C_C122:G110_D 12 -16.927 -0.023 0.232 -0.347 -19.547 1 19 C 123 D 109 -4.449 C_G123:C109_D 13 -15.974 0.866 -0.331 -0.083 -17.696 1 20 C 124 D 107 14.206 C_DA124:DT107_D 14 -16.203 -0.582 -0.042 -0.129 2.402 1 20 C 125 D 106 13.491 C_DT125:DA106_D 15 -17.759 -0.708 -0.008 -0.297 6.334 1 20 C 126 D 105 -0.415 C_DA126:DT105_D 16 -18.333 -0.001 0.025 -0.002 10.987 1 20 C 127 D 104 -5.041 C_DT127:DA104_D 17 -9.669 -0.688 -0.351 0.062 17.167 1 19 C 129 D 103 2.707 C_C129:G103_D 18 -18.987 -0.240 -0.286 -0.331 -5.956 1 19 C 130 D 102 1.541 C_G130:C102_D 19 -24.246 -0.575 0.052 -0.068 -8.989 28 C 131 D 101 2.414 C_U131:G101_D 20 -5.020 2.754 0.822 -0.561 2.996 43.636 B B 21 22 9.235 A A 11 10 3.203 6.827 0.147 -1.137 BB_G21C22:G10U11_AA 1 4.596 -6.217 42.890 -2.156 0.224 2.575 39.720 B B 22 23 30.252 A A 10 9 3.838 19.705 -0.223 -1.618 BB_C22G23:C9G10_AA 2 1.614 -2.478 34.624 -4.800 0.526 2.847 24.230 B B 23 24 13.532 A A 9 7 3.108 5.568 -0.756 -1.178 BB_G23DA24:DT7C9_AA 3 -6.184 15.030 22.777 -4.463 -0.041 2.642 33.251 B B 24 25 5.751 A A 7 6 2.735 3.276 -0.210 -0.310 BB_DA24DT25:DA6DT7_AA 4 4.419 -7.756 32.806 -0.995 0.978 3.620 32.717 B B 25 26 16.222 A A 6 5 3.903 9.012 0.194 -0.518 BB_DT25DA26:DT5DA6_AA 5 3.156 -5.681 31.329 -2.751 0.297 2.678 34.493 B B 26 27 9.339 A A 5 4 2.850 5.502 0.203 -0.594 BB_DA26DT27:DA4DT5_AA 6 -4.251 7.216 33.805 -1.731 -0.906 3.221 22.215 B B 27 29 0.222 A A 4 3 3.239 0.086 0.877 -1.045 BB_DT27C29:G3DA4_AA 7 -0.348 0.904 22.212 -2.744 -2.405 2.555 40.128 B B 29 30 18.296 A A 3 2 3.293 12.347 -0.111 -1.978 BB_C29G30:C2G3_AA 8 -3.822 5.663 38.071 -4.178 -0.239 3.284 43.160 B B 30 31 3.703 A A 2 1 3.347 2.719 0.492 -1.427 BB_G30U31:G1C2_AA 9 3.588 -4.885 42.936 -2.211 -0.311 3.563 -39.496 B C 31 121 -19.149 A D 1 111 2.325 12.678 0.064 -4.422 BC_U31G121:U111G1_DA 10 -6.025 -9.099 -37.011 5.152 -0.567 3.360 40.828 C C 121 122 4.556 D D 111 110 3.495 3.169 -0.214 -1.120 CC_G121C122:G110U111_DD 11 4.486 -6.449 40.473 -1.972 0.826 2.263 48.942 C C 122 123 27.822 D D 110 109 3.508 22.283 0.064 -2.071 CC_C122G123:C109G110_DD 12 2.835 -3.539 43.768 -4.087 0.124 3.481 17.275 C C 123 124 -6.966 D D 109 107 3.367 -2.087 -0.166 -1.128 CC_G123DA124:DT107C109_DD 13 -0.438 1.463 17.144 -2.384 0.265 2.834 34.913 C C 124 125 -0.611 D D 107 106 2.834 -0.367 -0.112 -0.321 CC_DA124DT125:DA106DT107_DD 14 0.736 -1.227 34.903 -0.487 0.284 3.143 37.087 C C 125 126 11.230 D D 106 105 3.219 7.101 -0.440 -0.049 CC_DT125DA126:DT105DA106_DD 15 0.908 -1.435 36.413 -1.010 0.811 2.462 24.510 C C 126 127 21.582 D D 105 104 3.116 8.955 0.570 -1.268 CC_DA126DT127:DA104DT105_DD 16 0.599 -1.444 22.831 -5.438 -1.179 3.436 28.935 C C 127 129 -5.519 D D 104 103 3.223 -2.752 1.465 -1.642 CC_DT127C129:G103DA104_DD 17 1.602 -3.212 28.762 -2.665 -2.570 2.424 36.473 C C 129 130 28.449 D D 103 102 3.642 17.126 -0.679 -1.876 CC_C129G130:C102G103_DD 18 -3.076 5.110 32.180 -5.346 0.663 3.424 44.768 C C 130 131 2.506 D D 102 101 3.507 1.903 0.062 -1.095 CC_G130U131:G101C102_DD 19 -5.951 7.836 44.352 -1.622 -0.658 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-04-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-02-12 REL REL SPD SPERMIDINE HOH water SPD 200 2 SPD SPD 200 D HOH 205 3 HOH HOH 205 A HOH 208 3 HOH HOH 208 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 219 3 HOH HOH 219 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 224 3 HOH HOH 224 A HOH 227 3 HOH HOH 227 A HOH 231 3 HOH HOH 231 A HOH 239 3 HOH HOH 239 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 246 3 HOH HOH 246 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 260 3 HOH HOH 260 A HOH 281 3 HOH HOH 281 A HOH 201 3 HOH HOH 201 B HOH 207 3 HOH HOH 207 B HOH 209 3 HOH HOH 209 B HOH 211 3 HOH HOH 211 B HOH 216 3 HOH HOH 216 B HOH 218 3 HOH HOH 218 B HOH 229 3 HOH HOH 229 B HOH 237 3 HOH HOH 237 B HOH 240 3 HOH HOH 240 B HOH 243 3 HOH HOH 243 B HOH 248 3 HOH HOH 248 B HOH 249 3 HOH HOH 249 B HOH 259 3 HOH HOH 259 B HOH 265 3 HOH HOH 265 B HOH 279 3 HOH HOH 279 B HOH 202 3 HOH HOH 202 D HOH 203 3 HOH HOH 203 D HOH 204 3 HOH HOH 204 D HOH 206 3 HOH HOH 206 D HOH 217 3 HOH HOH 217 D HOH 228 3 HOH HOH 228 D HOH 234 3 HOH HOH 234 D HOH 235 3 HOH HOH 235 D HOH 238 3 HOH HOH 238 D HOH 244 3 HOH HOH 244 D HOH 245 3 HOH HOH 245 D HOH 247 3 HOH HOH 247 D HOH 263 3 HOH HOH 263 D HOH 264 3 HOH HOH 264 D HOH 266 3 HOH HOH 266 D HOH 268 3 HOH HOH 268 D HOH 272 3 HOH HOH 272 D HOH 273 3 HOH HOH 273 D HOH 276 3 HOH HOH 276 D HOH 278 3 HOH HOH 278 D HOH 210 3 HOH HOH 210 C HOH 212 3 HOH HOH 212 C HOH 213 3 HOH HOH 213 C HOH 223 3 HOH HOH 223 C HOH 225 3 HOH HOH 225 C HOH 226 3 HOH HOH 226 C HOH 232 3 HOH HOH 232 C HOH 233 3 HOH HOH 233 C HOH 236 3 HOH HOH 236 C HOH 250 3 HOH HOH 250 C HOH 251 3 HOH HOH 251 C HOH 254 3 HOH HOH 254 C HOH 255 3 HOH HOH 255 C HOH 256 3 HOH HOH 256 C HOH 261 3 HOH HOH 261 C HOH 262 3 HOH HOH 262 C HOH 267 3 HOH HOH 267 C HOH 269 3 HOH HOH 269 C HOH 270 3 HOH HOH 270 C HOH 271 3 HOH HOH 271 C HOH 274 3 HOH HOH 274 C HOH 275 3 HOH HOH 275 C HOH 277 3 HOH HOH 277 C HOH 280 3 HOH HOH 280 C G 1 n 1 G 1 A C 2 n 2 C 2 A G 3 n 3 G 3 A A 4 n 4 DA 4 A T 5 n 5 DT 5 A A 6 n 6 DA 6 A T 7 n 7 DT 7 A A 8 n 8 A 8 A C 9 n 9 C 9 A G 10 n 10 G 10 A U 11 n 11 U 11 A G 21 n 1 G 21 B C 22 n 2 C 22 B G 23 n 3 G 23 B A 24 n 4 DA 24 B T 25 n 5 DT 25 B A 26 n 6 DA 26 B T 27 n 7 DT 27 B A 28 n 8 A 28 B C 29 n 9 C 29 B G 30 n 10 G 30 B U 31 n 11 U 31 B G 101 n 1 G 101 D C 102 n 2 C 102 D G 103 n 3 G 103 D A 104 n 4 DA 104 D T 105 n 5 DT 105 D A 106 n 6 DA 106 D T 107 n 7 DT 107 D A 108 n 8 A 108 D C 109 n 9 C 109 D G 110 n 10 G 110 D U 111 n 11 U 111 D G 121 n 1 G 121 C C 122 n 2 C 122 C G 123 n 3 G 123 C A 124 n 4 DA 124 C T 125 n 5 DT 125 C A 126 n 6 DA 126 C T 127 n 7 DT 127 C A 128 n 8 A 128 C C 129 n 9 C 129 C G 130 n 10 G 130 C U 131 n 11 U 131 C author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A G 1 0.060 SIDE CHAIN 1 B G 21 0.054 SIDE CHAIN 1 B A 28 0.056 SIDE CHAIN 1 D DT 105 0.070 SIDE CHAIN 1 C C 129 0.066 SIDE CHAIN 1 13.15 2.00 113.00 126.15 A A A C4' C3' O3' U U U 11 11 11 N 0.2782 0.2495 2.4 10 453 6220 6220 7.3 95.7 random 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 2.4 10 81 1011 10 920 0 2.4 20 1I2X 6220 6220 0 0 1 95.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 2.4 A STRUCTURE OF A-DUPLEX WITH BULGED ADENOSINE, SPERMIDINE FORM 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N hydrog TYPE_28_PAIR A G 1 A N1 G 1 1_555 B U 31 B O2 U 11 1_555 hydrog TYPE_28_PAIR A G 1 A O6 G 1 1_555 B U 31 B N3 U 11 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 B G 30 B N1 G 10 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 B G 30 B O6 G 10 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 B G 30 B N2 G 10 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 B C 29 B N3 C 9 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 B C 29 B O2 C 9 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 B C 29 B N4 C 9 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 27 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 27 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 5 1_555 B DA 26 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 5 1_555 B DA 26 B N6 DA 6 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 25 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 25 B O4 DT 5 1_555 hydrog DT-DA PAIR A DT 7 A N3 DT 7 1_555 B DA 24 B N1 DA 4 1_555 hydrog WATSON-CRICK A C 9 A N3 C 9 1_555 B G 23 B N1 G 3 1_555 hydrog WATSON-CRICK A C 9 A N4 C 9 1_555 B G 23 B O6 G 3 1_555 hydrog WATSON-CRICK A C 9 A O2 C 9 1_555 B G 23 B N2 G 3 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 B C 22 B N3 C 2 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 B C 22 B O2 C 2 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 B C 22 B N4 C 2 1_555 hydrog TYPE_28_PAIR A U 11 A N3 U 11 1_555 B G 21 B O6 G 1 1_555 hydrog TYPE_28_PAIR A U 11 A O2 U 11 1_555 B G 21 B N1 G 1 1_555 hydrog TYPE_28_PAIR D G 101 C N1 G 1 1_555 C U 131 D O2 U 11 1_555 hydrog TYPE_28_PAIR D G 101 C O6 G 1 1_555 C U 131 D N3 U 11 1_555 hydrog WATSON-CRICK D C 102 C N3 C 2 1_555 C G 130 D N1 G 10 1_555 hydrog WATSON-CRICK D C 102 C N4 C 2 1_555 C G 130 D O6 G 10 1_555 hydrog WATSON-CRICK D C 102 C O2 C 2 1_555 C G 130 D N2 G 10 1_555 hydrog WATSON-CRICK D G 103 C N1 G 3 1_555 C C 129 D N3 C 9 1_555 hydrog WATSON-CRICK D G 103 C N2 G 3 1_555 C C 129 D O2 C 9 1_555 hydrog WATSON-CRICK D G 103 C O6 G 3 1_555 C C 129 D N4 C 9 1_555 hydrog WATSON-CRICK D DA 104 C N1 DA 4 1_555 C DT 127 D N3 DT 7 1_555 hydrog WATSON-CRICK D DA 104 C N6 DA 4 1_555 C DT 127 D O4 DT 7 1_555 hydrog WATSON-CRICK D DT 105 C N3 DT 5 1_555 C DA 126 D N1 DA 6 1_555 hydrog WATSON-CRICK D DT 105 C O4 DT 5 1_555 C DA 126 D N6 DA 6 1_555 hydrog WATSON-CRICK D DA 106 C N1 DA 6 1_555 C DT 125 D N3 DT 5 1_555 hydrog WATSON-CRICK D DA 106 C N6 DA 6 1_555 C DT 125 D O4 DT 5 1_555 hydrog WATSON-CRICK D DT 107 C N3 DT 7 1_555 C DA 124 D N1 DA 4 1_555 hydrog WATSON-CRICK D DT 107 C O4 DT 7 1_555 C DA 124 D N6 DA 4 1_555 hydrog WATSON-CRICK D C 109 C N3 C 9 1_555 C G 123 D N1 G 3 1_555 hydrog WATSON-CRICK D C 109 C N4 C 9 1_555 C G 123 D O6 G 3 1_555 hydrog WATSON-CRICK D C 109 C O2 C 9 1_555 C G 123 D N2 G 3 1_555 hydrog WATSON-CRICK D G 110 C N1 G 10 1_555 C C 122 D N3 C 2 1_555 hydrog WATSON-CRICK D G 110 C N2 G 10 1_555 C C 122 D O2 C 2 1_555 hydrog WATSON-CRICK D G 110 C O6 G 10 1_555 C C 122 D N4 C 2 1_555 hydrog TYPE_28_PAIR D U 111 C N3 U 11 1_555 C G 121 D O6 G 1 1_555 hydrog TYPE_28_PAIR D U 111 C O2 U 11 1_555 C G 121 D N1 G 1 1_555 DNA-RNA HYBRID 'adenine bulge, A-type NA, DNA/RNA hybrid', DNA-RNA HYBRID 1I2X PDB 1 1I2X 1 11 1I2X 1 11 1I2X A 1 1 11 21 31 1I2X 21 31 1I2X B 1 1 11 101 111 1I2X 101 111 1I2X D 1 1 11 121 131 1I2X 121 131 1I2X C 1 1 11 BINDING SITE FOR RESIDUE SPD D 200 D SPD 200 Software 3 A A 8 A A 8 3 3_545 D C 102 C C 2 3 1_555 D G 103 C G 3 3 1_555 19 orthorhombic P 21 21 21