0.016077
0.000000
0.000000
0.000000
0.016077
0.000000
0.000000
0.000000
0.007310
0.00000
0.00000
0.00000
Jung, S.
Spinelli, S.
Schimmele, B.
Honegger, A.
Pugliese, L.
Cambillau, C.
Pluckthun, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.0
90.0
90.0
62.2
62.2
136.8
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
S
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
309
671
685
10.1006/jmbi.2001.4663
11397088
Selection, characterization and x-ray structure of anti-ampicillin single-chain Fv fragments from phage-displayed murine antibody libraries.
2001
10.2210/pdb1i3g/pdb
pdb_00001i3g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
IMAGE PLATE
MARRESEARCH
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
12295.677
ANTIBODY FV FRAGMENT
VL DOMAIN
1
man
polymer
13480.933
ANTIBODY FV FRAGMENT
VH DOMAIN
1
man
polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
1
syn
non-polymer
18.015
water
69
nat
water
no
no
DYKDIVLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISN
VQSEDLADYFCQQYSSYPLTFGAGTKLELKR
DYKDIVLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISN
VQSEDLADYFCQQYSSYPLTFGAGTKLELKR
L
polypeptide(L)
no
no
QVQLQQPGAELVRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLTVDKSSSTAY
MQLSSLTSEDSAVYFCARWGYWGQGTLVTVSAASGAHHHHH
QVQLQQPGAELVRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLTVDKSSSTAY
MQLSSLTSEDSAVYFCARWGYWGQGTLVTVSAASGAHHHHH
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
PROTEIN SELECTED BY PHAGE DISPLAY
10090
Mus musculus
562
Escherichia coli
PLASMID
house mouse
Mus
Escherichia
sample
PROTEIN SELECTED BY PHAGE DISPLAY
10090
Mus musculus
562
Escherichia coli
PLASMID
1
2.57
52.06
VAPOR DIFFUSION, HANGING DROP
6.5
Ammonium Sulfate,potassium phosphate, MPD, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-10-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1h8s contains the same protein with the mutations:6E7P10G, and complexed with ampicillin
1h8o contains the same protein with the mutations:6E7P10G
1h8n contains the same protein with the mutations:6E7S9G
RCSB
Y
RCSB
2001-02-15
REL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
unpublished structure from alternate crystal form
Other
experimental model
MPD
500
3
MPD
MPD
500
L
HOH
401
4
HOH
HOH
401
L
HOH
406
4
HOH
HOH
406
L
HOH
407
4
HOH
HOH
407
L
HOH
411
4
HOH
HOH
411
L
HOH
414
4
HOH
HOH
414
L
HOH
419
4
HOH
HOH
419
L
HOH
420
4
HOH
HOH
420
L
HOH
424
4
HOH
HOH
424
L
HOH
425
4
HOH
HOH
425
L
HOH
426
4
HOH
HOH
426
L
HOH
427
4
HOH
HOH
427
L
HOH
433
4
HOH
HOH
433
L
HOH
436
4
HOH
HOH
436
L
HOH
437
4
HOH
HOH
437
L
HOH
438
4
HOH
HOH
438
L
HOH
440
4
HOH
HOH
440
L
HOH
442
4
HOH
HOH
442
L
HOH
444
4
HOH
HOH
444
L
HOH
446
4
HOH
HOH
446
L
HOH
448
4
HOH
HOH
448
L
HOH
450
4
HOH
HOH
450
L
HOH
452
4
HOH
HOH
452
L
HOH
459
4
HOH
HOH
459
L
HOH
460
4
HOH
HOH
460
L
HOH
461
4
HOH
HOH
461
L
HOH
462
4
HOH
HOH
462
L
HOH
463
4
HOH
HOH
463
L
HOH
468
4
HOH
HOH
468
L
HOH
473
4
HOH
HOH
473
L
HOH
474
4
HOH
HOH
474
L
HOH
402
4
HOH
HOH
402
H
HOH
403
4
HOH
HOH
403
H
HOH
404
4
HOH
HOH
404
H
HOH
405
4
HOH
HOH
405
H
HOH
408
4
HOH
HOH
408
H
HOH
409
4
HOH
HOH
409
H
HOH
410
4
HOH
HOH
410
H
HOH
412
4
HOH
HOH
412
H
HOH
413
4
HOH
HOH
413
H
HOH
415
4
HOH
HOH
415
H
HOH
416
4
HOH
HOH
416
H
HOH
417
4
HOH
HOH
417
H
HOH
418
4
HOH
HOH
418
H
HOH
421
4
HOH
HOH
421
H
HOH
422
4
HOH
HOH
422
H
HOH
423
4
HOH
HOH
423
H
HOH
428
4
HOH
HOH
428
H
HOH
429
4
HOH
HOH
429
H
HOH
430
4
HOH
HOH
430
H
HOH
431
4
HOH
HOH
431
H
HOH
432
4
HOH
HOH
432
H
HOH
434
4
HOH
HOH
434
H
HOH
439
4
HOH
HOH
439
H
HOH
441
4
HOH
HOH
441
H
HOH
443
4
HOH
HOH
443
H
HOH
445
4
HOH
HOH
445
H
HOH
447
4
HOH
HOH
447
H
HOH
451
4
HOH
HOH
451
H
HOH
453
4
HOH
HOH
453
H
HOH
454
4
HOH
HOH
454
H
HOH
455
4
HOH
HOH
455
H
HOH
456
4
HOH
HOH
456
H
HOH
457
4
HOH
HOH
457
H
HOH
458
4
HOH
HOH
458
H
HOH
465
4
HOH
HOH
465
H
HOH
466
4
HOH
HOH
466
H
HOH
467
4
HOH
HOH
467
H
HOH
469
4
HOH
HOH
469
H
HOH
471
4
HOH
HOH
471
H
n
1
-2
L
n
2
-1
L
n
3
0
L
ASP
1
n
4
ASP
1
L
ILE
2
n
5
ILE
2
L
VAL
3
n
6
VAL
3
L
LEU
4
n
7
LEU
4
L
THR
5
n
8
THR
5
L
GLN
6
n
9
GLN
6
L
SER
7
n
10
SER
7
L
HIS
8
n
11
HIS
8
L
LYS
9
n
12
LYS
9
L
PHE
10
n
13
PHE
10
L
MET
11
n
14
MET
11
L
SER
12
n
15
SER
12
L
THR
13
n
16
THR
13
L
SER
14
n
17
SER
14
L
VAL
15
n
18
VAL
15
L
GLY
16
n
19
GLY
16
L
ASP
17
n
20
ASP
17
L
ARG
18
n
21
ARG
18
L
VAL
19
n
22
VAL
19
L
SER
20
n
23
SER
20
L
ILE
21
n
24
ILE
21
L
THR
22
n
25
THR
22
L
CYS
23
n
26
CYS
23
L
LYS
24
n
27
LYS
24
L
ALA
25
n
28
ALA
25
L
SER
26
n
29
SER
26
L
GLN
29
n
30
GLN
29
L
ASP
30
n
31
ASP
30
L
VAL
31
n
32
VAL
31
L
GLY
32
n
33
GLY
32
L
THR
39
n
34
THR
39
L
ALA
40
n
35
ALA
40
L
VAL
41
n
36
VAL
41
L
ALA
42
n
37
ALA
42
L
TRP
43
n
38
TRP
43
L
TYR
44
n
39
TYR
44
L
GLN
45
n
40
GLN
45
L
GLN
46
n
41
GLN
46
L
LYS
47
n
42
LYS
47
L
PRO
48
n
43
PRO
48
L
GLY
49
n
44
GLY
49
L
GLN
50
n
45
GLN
50
L
SER
51
n
46
SER
51
L
PRO
52
n
47
PRO
52
L
LYS
53
n
48
LYS
53
L
LEU
54
n
49
LEU
54
L
LEU
55
n
50
LEU
55
L
ILE
56
n
51
ILE
56
L
TYR
57
n
52
TYR
57
L
TRP
58
n
53
TRP
58
L
ALA
67
n
54
ALA
67
L
SER
68
n
55
SER
68
L
THR
69
n
56
THR
69
L
ARG
70
n
57
ARG
70
L
HIS
71
n
58
HIS
71
L
THR
72
n
59
THR
72
L
GLY
73
n
60
GLY
73
L
VAL
74
n
61
VAL
74
L
PRO
75
n
62
PRO
75
L
ASP
76
n
63
ASP
76
L
ARG
77
n
64
ARG
77
L
PHE
78
n
65
PHE
78
L
THR
79
n
66
THR
79
L
GLY
80
n
67
GLY
80
L
SER
81
n
68
SER
81
L
GLY
82
n
69
GLY
82
L
SER
83
n
70
SER
83
L
GLY
84
n
71
GLY
84
L
THR
87
n
72
THR
87
L
ASP
88
n
73
ASP
88
L
PHE
89
n
74
PHE
89
L
THR
90
n
75
THR
90
L
LEU
91
n
76
LEU
91
L
THR
92
n
77
THR
92
L
ILE
93
n
78
ILE
93
L
SER
94
n
79
SER
94
L
ASN
95
n
80
ASN
95
L
VAL
96
n
81
VAL
96
L
GLN
97
n
82
GLN
97
L
SER
98
n
83
SER
98
L
GLU
99
n
84
GLU
99
L
ASP
100
n
85
ASP
100
L
LEU
101
n
86
LEU
101
L
ALA
102
n
87
ALA
102
L
ASP
103
n
88
ASP
103
L
TYR
104
n
89
TYR
104
L
PHE
105
n
90
PHE
105
L
CYS
106
n
91
CYS
106
L
GLN
107
n
92
GLN
107
L
GLN
108
n
93
GLN
108
L
TYR
109
n
94
TYR
109
L
SER
110
n
95
SER
110
L
SER
111
n
96
SER
111
L
TYR
135
n
97
TYR
135
L
PRO
136
n
98
PRO
136
L
LEU
137
n
99
LEU
137
L
THR
138
n
100
THR
138
L
PHE
139
n
101
PHE
139
L
GLY
140
n
102
GLY
140
L
ALA
141
n
103
ALA
141
L
GLY
142
n
104
GLY
142
L
THR
143
n
105
THR
143
L
LYS
144
n
106
LYS
144
L
LEU
145
n
107
LEU
145
L
GLU
146
n
108
GLU
146
L
LEU
147
n
109
LEU
147
L
n
110
148
L
n
111
149
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
PRO
7
n
7
PRO
7
H
GLY
9
n
8
GLY
9
H
ALA
10
n
9
ALA
10
H
GLU
11
n
10
GLU
11
H
LEU
12
n
11
LEU
12
H
VAL
13
n
12
VAL
13
H
ARG
14
n
13
ARG
14
H
PRO
15
n
14
PRO
15
H
GLY
16
n
15
GLY
16
H
ALA
17
n
16
ALA
17
H
SER
18
n
17
SER
18
H
VAL
19
n
18
VAL
19
H
LYS
20
n
19
LYS
20
H
LEU
21
n
20
LEU
21
H
SER
22
n
21
SER
22
H
CYS
23
n
22
CYS
23
H
LYS
24
n
23
LYS
24
H
ALA
25
n
24
ALA
25
H
SER
26
n
25
SER
26
H
GLY
27
n
26
GLY
27
H
TYR
29
n
27
TYR
29
H
THR
30
n
28
THR
30
H
PHE
31
n
29
PHE
31
H
THR
32
n
30
THR
32
H
SER
33
n
31
SER
33
H
TYR
39
n
32
TYR
39
H
TRP
40
n
33
TRP
40
H
ILE
41
n
34
ILE
41
H
ASN
42
n
35
ASN
42
H
TRP
43
n
36
TRP
43
H
VAL
44
n
37
VAL
44
H
LYS
45
n
38
LYS
45
H
GLN
46
n
39
GLN
46
H
ARG
47
n
40
ARG
47
H
PRO
48
n
41
PRO
48
H
GLY
49
n
42
GLY
49
H
GLN
50
n
43
GLN
50
H
GLY
51
n
44
GLY
51
H
LEU
52
n
45
LEU
52
H
GLU
53
n
46
GLU
53
H
TRP
54
n
47
TRP
54
H
ILE
55
n
48
ILE
55
H
GLY
56
n
49
GLY
56
H
ASN
57
n
50
ASN
57
H
ILE
58
n
51
ILE
58
H
TYR
59
n
52
TYR
59
H
PRO
60
n
53
PRO
60
H
SER
61
n
54
SER
61
H
ASP
65
n
55
ASP
65
H
SER
66
n
56
SER
66
H
TYR
67
n
57
TYR
67
H
THR
68
n
58
THR
68
H
ASN
69
n
59
ASN
69
H
TYR
70
n
60
TYR
70
H
ASN
71
n
61
ASN
71
H
GLN
72
n
62
GLN
72
H
LYS
73
n
63
LYS
73
H
PHE
74
n
64
PHE
74
H
LYS
75
n
65
LYS
75
H
ASP
76
n
66
ASP
76
H
LYS
77
n
67
LYS
77
H
ALA
78
n
68
ALA
78
H
THR
79
n
69
THR
79
H
LEU
80
n
70
LEU
80
H
THR
81
n
71
THR
81
H
VAL
82
n
72
VAL
82
H
ASP
83
n
73
ASP
83
H
LYS
84
n
74
LYS
84
H
SER
85
n
75
SER
85
H
SER
86
n
76
SER
86
H
SER
87
n
77
SER
87
H
THR
88
n
78
THR
88
H
ALA
89
n
79
ALA
89
H
TYR
90
n
80
TYR
90
H
MET
91
n
81
MET
91
H
GLN
92
n
82
GLN
92
H
LEU
93
n
83
LEU
93
H
SER
94
n
84
SER
94
H
SER
95
n
85
SER
95
H
LEU
96
n
86
LEU
96
H
THR
97
n
87
THR
97
H
SER
98
n
88
SER
98
H
GLU
99
n
89
GLU
99
H
ASP
100
n
90
ASP
100
H
SER
101
n
91
SER
101
H
ALA
102
n
92
ALA
102
H
VAL
103
n
93
VAL
103
H
TYR
104
n
94
TYR
104
H
PHE
105
n
95
PHE
105
H
CYS
106
n
96
CYS
106
H
ALA
107
n
97
ALA
107
H
ARG
108
n
98
ARG
108
H
TRP
109
n
99
TRP
109
H
GLY
137
n
100
GLY
137
H
TYR
138
n
101
TYR
138
H
TRP
139
n
102
TRP
139
H
GLY
140
n
103
GLY
140
H
GLN
141
n
104
GLN
141
H
GLY
142
n
105
GLY
142
H
THR
143
n
106
THR
143
H
LEU
144
n
107
LEU
144
H
VAL
145
n
108
VAL
145
H
THR
146
n
109
THR
146
H
VAL
147
n
110
VAL
147
H
SER
148
n
111
SER
148
H
n
112
149
H
n
113
150
H
n
114
151
H
n
115
152
H
n
116
153
H
n
117
154
H
n
118
155
H
n
119
156
H
n
120
157
H
n
121
158
H
author_and_software_defined_assembly
PISA
2
dimeric
1740
-23
10250
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
N
THR
5
A
N
THR
8
L
O
LYS
24
A
O
LYS
27
L
N
CYS
23
A
N
CYS
26
L
O
PHE
89
A
O
PHE
74
L
O
THR
92
A
O
THR
77
L
N
THR
79
A
N
THR
66
L
N
THR
69
A
N
THR
56
L
O
TYR
57
A
O
TYR
52
L
N
LEU
55
A
N
LEU
50
L
O
TRP
43
A
O
TRP
38
L
O
GLN
46
A
O
GLN
41
L
N
ASP
103
A
N
ASP
88
L
N
GLN
108
A
N
GLN
93
L
O
THR
138
A
O
THR
100
L
N
THR
69
A
N
THR
56
L
O
TYR
57
A
O
TYR
52
L
N
LEU
55
A
N
LEU
50
L
O
TRP
43
A
O
TRP
38
L
O
GLN
46
A
O
GLN
41
L
N
ASP
103
A
N
ASP
88
L
N
TYR
104
A
N
TYR
89
L
O
THR
143
A
O
THR
105
L
N
GLU
146
A
N
GLU
108
L
O
MET
11
A
O
MET
14
H
O
GLN
5
B
O
GLN
5
H
N
LYS
24
B
N
LYS
23
H
O
CYS
23
B
O
CYS
22
H
N
ALA
89
B
N
ALA
79
H
N
GLN
92
B
N
GLN
82
H
O
THR
79
B
O
THR
69
H
O
ASN
69
B
O
ASN
59
H
N
ASN
57
B
N
ASN
50
H
O
ILE
58
B
O
ILE
51
H
N
ILE
41
B
N
ILE
34
H
O
GLN
46
B
O
GLN
39
H
N
VAL
103
B
N
VAL
93
H
N
ARG
108
B
N
ARG
98
H
O
TYR
138
B
O
TYR
101
H
O
ASN
69
B
O
ASN
59
H
N
ASN
57
B
N
ASN
50
H
O
ILE
58
B
O
ILE
51
H
N
ILE
41
B
N
ILE
34
H
O
GLN
46
B
O
GLN
39
H
N
VAL
103
B
N
VAL
93
H
N
TYR
104
B
N
TYR
94
H
O
THR
143
B
O
THR
106
H
N
THR
146
B
N
THR
109
H
O
GLU
11
B
O
GLU
10
1
L
CD
LYS
9
A
CD
LYS
12
0
Y
1
L
CE
LYS
9
A
CE
LYS
12
0
Y
1
L
NZ
LYS
9
A
NZ
LYS
12
0
Y
1
L
C
THR
13
A
C
THR
16
0
Y
1
L
CG
LYS
53
A
CG
LYS
48
0
Y
1
L
CD
LYS
53
A
CD
LYS
48
0
Y
1
L
CE
LYS
53
A
CE
LYS
48
0
Y
1
L
NZ
LYS
53
A
NZ
LYS
48
0
Y
1
L
CB
SER
68
A
CB
SER
55
0
Y
1
L
N
THR
72
A
N
THR
59
0
Y
1
L
O
THR
72
A
O
THR
59
0
Y
1
L
CB
THR
72
A
CB
THR
59
0
Y
1
L
OG1
THR
72
A
OG1
THR
59
0
Y
1
L
CG2
THR
72
A
CG2
THR
59
0
Y
1
L
CG1
VAL
74
A
CG1
VAL
61
0
Y
1
L
CB
ASP
76
A
CB
ASP
63
0
Y
1
L
CG
ASP
76
A
CG
ASP
63
0
Y
1
L
OD1
ASP
76
A
OD1
ASP
63
0
Y
1
L
OD2
ASP
76
A
OD2
ASP
63
0
Y
1
L
CG2
THR
79
A
CG2
THR
66
0
Y
1
L
C
SER
94
A
C
SER
79
0
Y
1
L
O
SER
94
A
O
SER
79
0
Y
1
L
ND2
ASN
95
A
ND2
ASN
80
0
Y
1
L
NE2
GLN
97
A
NE2
GLN
82
0
Y
1
L
OE1
GLU
99
A
OE1
GLU
84
0
Y
1
L
O
LEU
147
A
O
LEU
109
0
Y
1
H
N
GLN
1
B
N
GLN
1
0
Y
1
H
CA
GLN
1
B
CA
GLN
1
0
Y
1
H
CG
GLN
1
B
CG
GLN
1
0
Y
1
H
CD
GLN
1
B
CD
GLN
1
0
Y
1
H
OE1
GLN
1
B
OE1
GLN
1
0
Y
1
H
NE2
GLN
1
B
NE2
GLN
1
0
Y
1
H
CG1
VAL
2
B
CG1
VAL
2
0
Y
1
H
OE2
GLU
11
B
OE2
GLU
10
0
Y
1
H
CG
ARG
14
B
CG
ARG
13
0
Y
1
H
CD
ARG
14
B
CD
ARG
13
0
Y
1
H
NE
ARG
14
B
NE
ARG
13
0
Y
1
H
NH1
ARG
14
B
NH1
ARG
13
0
Y
1
H
NH2
ARG
14
B
NH2
ARG
13
0
Y
1
H
CE
LYS
24
B
CE
LYS
23
0
Y
1
H
NZ
LYS
24
B
NZ
LYS
23
0
Y
1
H
OG
SER
61
B
OG
SER
54
0
Y
1
H
CG
GLN
72
B
CG
GLN
62
0
Y
1
H
CD
GLN
72
B
CD
GLN
62
0
Y
1
H
OE1
GLN
72
B
OE1
GLN
62
0
Y
1
H
NE2
GLN
72
B
NE2
GLN
62
0
Y
1
H
CD
LYS
75
B
CD
LYS
65
0
Y
1
H
CE
LYS
75
B
CE
LYS
65
0
Y
1
H
NZ
LYS
75
B
NZ
LYS
65
0
Y
1
H
CG
GLU
99
B
CG
GLU
89
0
Y
1
H
CD
GLU
99
B
CD
GLU
89
0
Y
1
H
OE1
GLU
99
B
OE1
GLU
89
0
Y
1
H
OE2
GLU
99
B
OE2
GLU
89
0
Y
1
H
C
SER
148
B
C
SER
111
0
Y
1
L
ASP
-2
A
ASP
1
1
Y
1
L
TYR
-1
A
TYR
2
1
Y
1
L
LYS
0
A
LYS
3
1
Y
1
L
LYS
148
A
LYS
110
1
Y
1
L
ARG
149
A
ARG
111
1
Y
1
H
ALA
149
B
ALA
112
1
Y
1
H
ALA
150
B
ALA
113
1
Y
1
H
SER
151
B
SER
114
1
Y
1
H
GLY
152
B
GLY
115
1
Y
1
H
ALA
153
B
ALA
116
1
Y
1
H
HIS
154
B
HIS
117
1
Y
1
H
HIS
155
B
HIS
118
1
Y
1
H
HIS
156
B
HIS
119
1
Y
1
H
HIS
157
B
HIS
120
1
Y
1
H
HIS
158
B
HIS
121
1
Y
1
11.16
1.60
122.70
133.86
H
H
H
O
C
N
GLN
GLN
GLN
5
5
6
Y
1
L
SER
7
-41.09
-70.26
1
L
THR
13
174.83
164.97
1
L
VAL
15
-38.55
141.19
1
L
ALA
67
68.83
-46.35
1
L
THR
72
-55.41
104.28
1
L
ALA
102
-174.63
-177.07
1
H
ALA
102
-175.10
-177.26
0
0
0
0
0
0
0.243
0.175
2.44
15.
9323
RANDOM
1
Isotropic
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
anti-N9-neuraminidase antibody NC41/anti-lysozyme antibody D11.15
Engh & Huber
2.44
15.
77
1770
0
0
1693
0.008
1.81
1.21
2.44
20.0
1I3G
41050
9809
2
2
0.07
1
11
89.2
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.851
CRYSTAL STRUCTURE OF AN AMPICILLIN SINGLE CHAIN FV, FORM 1, FREE
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
L
GLN
97
A
GLN
82
HELX_P
L
LEU
101
A
LEU
86
5
1
5
H
THR
30
B
THR
28
HELX_P
H
TYR
39
B
TYR
32
5
2
5
H
THR
97
B
THR
87
HELX_P
H
SER
101
B
SER
91
5
3
5
disulf
2.019
L
CYS
23
A
SG
CYS
26
1_555
L
CYS
106
A
SG
CYS
91
1_555
disulf
2.032
H
CYS
23
B
SG
CYS
22
1_555
H
CYS
106
B
SG
CYS
96
1_555
ANTIBIOTIC
ANTIBODY FV FRAGMENT, antibiotic
L
TYR
135
A
TYR
97
1
L
PRO
136
A
PRO
98
-0.89
1I3G
PDB
1
1I3G
1I3G
PDB
2
1I3G
-2
149
1I3G
-2
149
1I3G
L
1
1
111
1
158
1I3G
1
158
1I3G
H
2
1
121
4
5
6
4
5
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
L
LEU
4
A
LEU
7
L
GLN
6
A
GLN
9
L
VAL
19
A
VAL
22
L
ALA
25
A
ALA
28
L
ASP
88
A
ASP
73
L
ILE
93
A
ILE
78
L
PHE
78
A
PHE
65
L
SER
83
A
SER
70
L
THR
69
A
THR
56
L
ARG
70
A
ARG
57
L
LYS
53
A
LYS
48
L
TYR
57
A
TYR
52
L
VAL
41
A
VAL
36
L
GLN
46
A
GLN
41
L
ASP
103
A
ASP
88
L
GLN
108
A
GLN
93
L
THR
138
A
THR
100
L
PHE
139
A
PHE
101
L
THR
69
A
THR
56
L
ARG
70
A
ARG
57
L
LYS
53
A
LYS
48
L
TYR
57
A
TYR
52
L
VAL
41
A
VAL
36
L
GLN
46
A
GLN
41
L
ASP
103
A
ASP
88
L
GLN
108
A
GLN
93
L
THR
143
A
THR
105
L
GLU
146
A
GLU
108
L
PHE
10
A
PHE
13
L
SER
12
A
SER
15
H
GLN
3
B
GLN
3
H
GLN
5
B
GLN
5
H
VAL
19
B
VAL
18
H
SER
26
B
SER
25
H
THR
88
B
THR
78
H
LEU
93
B
LEU
83
H
ALA
78
B
ALA
68
H
ASP
83
B
ASP
73
H
THR
68
B
THR
58
H
TYR
70
B
TYR
60
H
LEU
52
B
LEU
45
H
ILE
58
B
ILE
51
H
ILE
41
B
ILE
34
H
GLN
46
B
GLN
39
H
ALA
102
B
ALA
92
H
ARG
108
B
ARG
98
H
TYR
138
B
TYR
101
H
TRP
139
B
TRP
102
H
THR
68
B
THR
58
H
TYR
70
B
TYR
60
H
LEU
52
B
LEU
45
H
ILE
58
B
ILE
51
H
ILE
41
B
ILE
34
H
GLN
46
B
GLN
39
H
ALA
102
B
ALA
92
H
ARG
108
B
ARG
98
H
THR
143
B
THR
106
H
VAL
147
B
VAL
110
H
ALA
10
B
ALA
9
H
VAL
13
B
VAL
12
BINDING SITE FOR RESIDUE MPD L 500
L
MPD
500
Software
6
H
ASN
42
B
ASN
35
6
1_555
H
TRP
139
B
TRP
102
6
1_555
L
TYR
44
A
TYR
39
6
1_555
L
GLN
107
A
GLN
92
6
1_555
L
TYR
109
A
TYR
94
6
1_555
L
HOH
436
D
HOH
6
1_555
92
P 41 21 2