0.012914 0.007456 0.000000 0.000000 0.014912 0.000000 0.000000 0.000000 0.005714 0.00000 0.00000 0.00000 Spinelli, S. Tegoni, M. Frenken, L. van Vliet, C. Cambillau, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 77.435 77.435 175.019 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H7 N O2 113.115 5-OXO-PYRROLIDINE-2-CARBALDEHYDE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C19 H16 N8 O10 S3 612.573 5-(4,6-DIAMINO-[1,3,5]TRIAZIN-2-YLAMINO)-4-HYDROXY-3-(2-SULFO-PHENYLAZO)-NAPHTHALENE-2,7-DISULFONIC ACID REACTIVE RED 1 DYE non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N C N 77 N N N 78 N O N 79 N C N 80 S C N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 R C N 91 N C N 92 N O N 93 N C N 94 N S N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 S C N 105 N C N 106 N O N 107 N C N 108 N C N 109 N C N 110 N O N 111 N N N 112 N O N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N O N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 N C N 144 N C N 145 N O N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N O N 153 N H N 154 N H N 155 N N N 156 S C N 157 N C N 158 N O N 159 S C N 160 N C N 161 N C N 162 N C N 163 N O N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N N N 178 S C N 179 N C N 180 N O N 181 N C N 182 N C N 183 N C N 184 N C N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 N C N 204 N C N 205 N C N 206 N C N 207 N N N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 N C N 229 N C N 230 N S N 231 N C N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C Y 249 N C Y 250 N C Y 251 N C Y 252 N C Y 253 N C Y 254 N C N 255 N O N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N O N 285 N O N 286 N O N 287 N S Y 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C N 304 N O N 305 N O N 306 N O N 307 N O N 308 N S N 309 N O N 310 N O N 311 N O N 312 N S N 313 N N N 314 N N N 315 N N Y 316 N C Y 317 N N Y 318 N C Y 319 N N Y 320 N C Y 321 N N N 322 N N N 323 N N N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N S N 355 N O N 356 N O N 357 N O N 358 N O N 359 N N N 360 S C N 361 N C N 362 N O N 363 R C N 364 N O N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N N Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C N 432 N C N 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing Y 242 N doub Y 243 N sing Y 244 N sing N 245 N sing Y 246 N doub N 247 N sing Y 248 N doub N 249 N sing Y 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N doub N 275 N sing Y 276 N doub Y 277 N sing Y 278 N sing N 279 N sing Y 280 N doub N 281 N sing Y 282 N sing N 283 N sing Y 284 N doub N 285 N sing N 286 N sing Y 287 N doub Y 288 N sing N 289 N sing Y 290 N sing N 291 N sing Y 292 N doub N 293 N sing Y 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing Y 299 N doub N 300 N sing Y 301 N sing N 302 N sing Y 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N doub N 311 N sing N 312 N sing N 313 N doub N 314 N doub N 315 E doub N 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing Y 321 N doub N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub Y 379 N sing Y 380 N sing N 381 N sing Y 382 N sing Y 383 N doub N 384 N sing Y 385 N doub N 386 N sing Y 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing Y 402 N doub Y 403 N sing Y 404 N sing N 405 N sing Y 406 N doub N 407 N sing Y 408 N doub N 409 N sing Y 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 311 123 129 10.1006/jmbi.2001.4856 11469862 Lateral recognition of a dye hapten by a llama VHH domain. 2001 10.2210/pdb1i3u/pdb pdb_00001i3u 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.988 1.0 ID2 ESRF 0.988 SYNCHROTRON ESRF BEAMLINE ID2 13842.268 ANTIBODY VHH LAMA DOMAIN 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 612.573 5-(4,6-DIAMINO-[1,3,5]TRIAZIN-2-YLAMINO)-4-HYDROXY-3-(2-SULFO-PHENYLAZO)-NAPHTHALENE-2,7-DISULFONIC ACID 1 syn non-polymer 18.015 water 164 nat water no yes (CGN)VQLQESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVS RDNAKNTVNLQMNSLKPEDTAVYYCAAKTTTWGGNDPNNWNYWGQGTQVTV XVQLQESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNA KNTVNLQMNSLKPEDTAVYYCAAKTTTWGGNDPNNWNYWGQGTQVTV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n llama Lama Escherichia sample 9844 Lama glama 562 Escherichia coli 1 3.65 66.27 VAPOR DIFFUSION, HANGING DROP 5.5 MME 5000, sodium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K 290 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2001-08-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Three-dimensional Structure of a Lama VHH domain unliganded SEQUENCE AN APPROPRIATE SEQUENCE DATABASE MATCH WAS NOT AVAILABLE AT THE TIME OF PROCESSING. RCSB Y RCSB 2001-02-16 REL REL SO4 SULFATE ION RR1 5-(4,6-DIAMINO-[1,3,5]TRIAZIN-2-YLAMINO)-4-HYDROXY-3-(2-SULFO-PHENYLAZO)-NAPHTHALENE-2,7-DISULFONIC ACID HOH water VHH52 anti-R1 unliganded Other experimental model SO4 1 2 SO4 SO4 402 A RR1 1 3 RR1 RR1 401 A WAT 201 4 HOH HOH 201 A WAT 202 4 HOH HOH 202 A WAT 203 4 HOH HOH 203 A WAT 204 4 HOH HOH 204 A WAT 205 4 HOH HOH 205 A WAT 206 4 HOH HOH 206 A WAT 207 4 HOH HOH 207 A WAT 208 4 HOH HOH 208 A WAT 209 4 HOH HOH 209 A WAT 210 4 HOH HOH 210 A WAT 211 4 HOH HOH 211 A WAT 212 4 HOH HOH 212 A WAT 213 4 HOH HOH 213 A WAT 214 4 HOH HOH 214 A WAT 215 4 HOH HOH 215 A WAT 216 4 HOH HOH 216 A WAT 217 4 HOH HOH 217 A WAT 218 4 HOH HOH 218 A WAT 219 4 HOH HOH 219 A WAT 220 4 HOH HOH 220 A WAT 221 4 HOH HOH 221 A WAT 222 4 HOH HOH 222 A WAT 223 4 HOH HOH 223 A WAT 224 4 HOH HOH 224 A WAT 225 4 HOH HOH 225 A WAT 226 4 HOH HOH 226 A WAT 227 4 HOH HOH 227 A WAT 228 4 HOH HOH 228 A WAT 229 4 HOH HOH 229 A WAT 230 4 HOH HOH 230 A WAT 231 4 HOH HOH 231 A WAT 232 4 HOH HOH 232 A WAT 233 4 HOH HOH 233 A WAT 234 4 HOH HOH 234 A WAT 235 4 HOH HOH 235 A WAT 236 4 HOH HOH 236 A WAT 237 4 HOH HOH 237 A WAT 238 4 HOH HOH 238 A WAT 239 4 HOH HOH 239 A WAT 240 4 HOH HOH 240 A WAT 241 4 HOH HOH 241 A WAT 242 4 HOH HOH 242 A WAT 243 4 HOH HOH 243 A WAT 244 4 HOH HOH 244 A WAT 245 4 HOH HOH 245 A WAT 246 4 HOH HOH 246 A WAT 247 4 HOH HOH 247 A WAT 248 4 HOH HOH 248 A WAT 249 4 HOH HOH 249 A WAT 250 4 HOH HOH 250 A WAT 251 4 HOH HOH 251 A WAT 252 4 HOH HOH 252 A WAT 253 4 HOH HOH 253 A WAT 254 4 HOH HOH 254 A WAT 255 4 HOH HOH 255 A WAT 256 4 HOH HOH 256 A WAT 257 4 HOH HOH 257 A WAT 258 4 HOH HOH 258 A WAT 259 4 HOH HOH 259 A WAT 260 4 HOH HOH 260 A WAT 261 4 HOH HOH 261 A WAT 262 4 HOH HOH 262 A WAT 263 4 HOH HOH 263 A WAT 264 4 HOH HOH 264 A WAT 265 4 HOH HOH 265 A WAT 266 4 HOH HOH 266 A WAT 267 4 HOH HOH 267 A WAT 268 4 HOH HOH 268 A WAT 269 4 HOH HOH 269 A WAT 270 4 HOH HOH 270 A WAT 271 4 HOH HOH 271 A WAT 272 4 HOH HOH 272 A WAT 273 4 HOH HOH 273 A WAT 274 4 HOH HOH 274 A WAT 275 4 HOH HOH 275 A WAT 276 4 HOH HOH 276 A WAT 277 4 HOH HOH 277 A WAT 278 4 HOH HOH 278 A WAT 279 4 HOH HOH 279 A WAT 280 4 HOH HOH 280 A WAT 281 4 HOH HOH 281 A WAT 282 4 HOH HOH 282 A WAT 283 4 HOH HOH 283 A WAT 284 4 HOH HOH 284 A WAT 285 4 HOH HOH 285 A WAT 286 4 HOH HOH 286 A WAT 287 4 HOH HOH 287 A WAT 288 4 HOH HOH 288 A WAT 289 4 HOH HOH 289 A WAT 290 4 HOH HOH 290 A WAT 291 4 HOH HOH 291 A WAT 292 4 HOH HOH 292 A WAT 293 4 HOH HOH 293 A WAT 294 4 HOH HOH 294 A WAT 295 4 HOH HOH 295 A WAT 296 4 HOH HOH 296 A WAT 297 4 HOH HOH 297 A WAT 298 4 HOH HOH 298 A WAT 299 4 HOH HOH 299 A WAT 300 4 HOH HOH 300 A WAT 301 4 HOH HOH 301 A WAT 302 4 HOH HOH 302 A WAT 303 4 HOH HOH 303 A WAT 304 4 HOH HOH 304 A WAT 305 4 HOH HOH 305 A WAT 306 4 HOH HOH 306 A WAT 307 4 HOH HOH 307 A WAT 308 4 HOH HOH 308 A WAT 309 4 HOH HOH 309 A WAT 310 4 HOH HOH 310 A WAT 311 4 HOH HOH 311 A WAT 312 4 HOH HOH 312 A WAT 313 4 HOH HOH 313 A WAT 314 4 HOH HOH 314 A WAT 315 4 HOH HOH 315 A WAT 316 4 HOH HOH 316 A WAT 317 4 HOH HOH 317 A WAT 318 4 HOH HOH 318 A WAT 319 4 HOH HOH 319 A WAT 320 4 HOH HOH 320 A WAT 321 4 HOH HOH 321 A WAT 322 4 HOH HOH 322 A WAT 323 4 HOH HOH 323 A WAT 324 4 HOH HOH 324 A WAT 325 4 HOH HOH 325 A WAT 326 4 HOH HOH 326 A WAT 327 4 HOH HOH 327 A WAT 328 4 HOH HOH 328 A WAT 329 4 HOH HOH 329 A WAT 330 4 HOH HOH 330 A WAT 331 4 HOH HOH 331 A WAT 332 4 HOH HOH 332 A WAT 333 4 HOH HOH 333 A WAT 334 4 HOH HOH 334 A WAT 335 4 HOH HOH 335 A WAT 336 4 HOH HOH 336 A WAT 337 4 HOH HOH 337 A WAT 338 4 HOH HOH 338 A WAT 339 4 HOH HOH 339 A WAT 340 4 HOH HOH 340 A WAT 341 4 HOH HOH 341 A WAT 342 4 HOH HOH 342 A WAT 343 4 HOH HOH 343 A WAT 344 4 HOH HOH 344 A WAT 345 4 HOH HOH 345 A WAT 346 4 HOH HOH 346 A WAT 347 4 HOH HOH 347 A WAT 348 4 HOH HOH 348 A WAT 349 4 HOH HOH 349 A WAT 350 4 HOH HOH 350 A WAT 351 4 HOH HOH 351 A WAT 352 4 HOH HOH 352 A WAT 353 4 HOH HOH 353 A WAT 354 4 HOH HOH 354 A WAT 355 4 HOH HOH 355 A WAT 356 4 HOH HOH 356 A WAT 357 4 HOH HOH 357 A WAT 358 4 HOH HOH 358 A WAT 359 4 HOH HOH 359 A WAT 360 4 HOH HOH 360 A WAT 361 4 HOH HOH 361 A WAT 362 4 HOH HOH 362 A WAT 363 4 HOH HOH 363 A WAT 364 4 HOH HOH 364 A PGL 1 n 1 CGN 1 A VAL 2 n 2 VAL 2 A GLN 3 n 3 GLN 3 A LEU 4 n 4 LEU 4 A GLN 5 n 5 GLN 5 A GLU 6 n 6 GLU 6 A SER 7 n 7 SER 7 A GLY 8 n 8 GLY 8 A GLY 9 n 9 GLY 9 A GLY 10 n 10 GLY 10 A LEU 11 n 11 LEU 11 A VAL 12 n 12 VAL 12 A GLN 13 n 13 GLN 13 A ALA 14 n 14 ALA 14 A GLY 15 n 15 GLY 15 A ASP 16 n 16 ASP 16 A SER 17 n 17 SER 17 A LEU 18 n 18 LEU 18 A LYS 19 n 19 LYS 19 A LEU 20 n 20 LEU 20 A SER 21 n 21 SER 21 A CYS 22 n 22 CYS 22 A GLU 23 n 23 GLU 23 A ALA 24 n 24 ALA 24 A SER 25 n 25 SER 25 A GLY 26 n 26 GLY 26 A ASP 27 n 27 ASP 27 A SER 28 n 28 SER 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A THR 31 n 31 THR 31 A TYR 32 n 32 TYR 32 A VAL 33 n 33 VAL 33 A ILE 34 n 34 ILE 34 A GLY 35 n 35 GLY 35 A TRP 36 n 36 TRP 36 A PHE 37 n 37 PHE 37 A ARG 38 n 38 ARG 38 A GLN 39 n 39 GLN 39 A ALA 40 n 40 ALA 40 A PRO 41 n 41 PRO 41 A GLY 42 n 42 GLY 42 A LYS 43 n 43 LYS 43 A GLU 44 n 44 GLU 44 A ARG 45 n 45 ARG 45 A ILE 46 n 46 ILE 46 A TYR 47 n 47 TYR 47 A LEU 48 n 48 LEU 48 A ALA 49 n 49 ALA 49 A THR 50 n 50 THR 50 A ILE 51 n 51 ILE 51 A GLY 52 n 52 GLY 52 A ARG 53 n 53 ARG 53 A ASN 54 n 54 ASN 54 A LEU 55 n 55 LEU 55 A VAL 56 n 56 VAL 56 A GLY 57 n 57 GLY 57 A PRO 58 n 58 PRO 58 A SER 59 n 59 SER 59 A ASP 60 n 60 ASP 60 A PHE 61 n 61 PHE 61 A TYR 62 n 62 TYR 62 A THR 63 n 63 THR 63 A ARG 64 n 64 ARG 64 A TYR 65 n 65 TYR 65 A ALA 66 n 66 ALA 66 A ASP 67 n 67 ASP 67 A SER 68 n 68 SER 68 A VAL 69 n 69 VAL 69 A LYS 70 n 70 LYS 70 A GLY 71 n 71 GLY 71 A ARG 72 n 72 ARG 72 A PHE 73 n 73 PHE 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A SER 76 n 76 SER 76 A ARG 77 n 77 ARG 77 A ASP 78 n 78 ASP 78 A ASN 79 n 79 ASN 79 A ALA 80 n 80 ALA 80 A LYS 81 n 81 LYS 81 A ASN 82 n 82 ASN 82 A THR 83 n 83 THR 83 A VAL 84 n 84 VAL 84 A ASN 85 n 85 ASN 85 A LEU 86 n 86 LEU 86 A GLN 87 n 87 GLN 87 A MET 88 n 88 MET 88 A ASN 89 n 89 ASN 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A LYS 92 n 92 LYS 92 A PRO 93 n 93 PRO 93 A GLU 94 n 94 GLU 94 A ASP 95 n 95 ASP 95 A THR 96 n 96 THR 96 A ALA 97 n 97 ALA 97 A VAL 98 n 98 VAL 98 A TYR 99 n 99 TYR 99 A TYR 100 n 100 TYR 100 A CYS 101 n 101 CYS 101 A ALA 102 n 102 ALA 102 A ALA 103 n 103 ALA 103 A LYS 104 n 104 LYS 104 A THR 105 n 105 THR 105 A THR 106 n 106 THR 106 A THR 107 n 107 THR 107 A TRP 108 n 108 TRP 108 A GLY 109 n 109 GLY 109 A GLY 110 n 110 GLY 110 A ASN 111 n 111 ASN 111 A ASP 112 n 112 ASP 112 A PRO 113 n 113 PRO 113 A ASN 114 n 114 ASN 114 A ASN 115 n 115 ASN 115 A TRP 116 n 116 TRP 116 A ASN 117 n 117 ASN 117 A TYR 118 n 118 TYR 118 A TRP 119 n 119 TRP 119 A GLY 120 n 120 GLY 120 A GLN 121 n 121 GLN 121 A GLY 122 n 122 GLY 122 A THR 123 n 123 THR 123 A GLN 124 n 124 GLN 124 A VAL 125 n 125 VAL 125 A THR 126 n 126 THR 126 A VAL 127 n 127 VAL 127 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 7 A O SER 7 A N SER 21 A N SER 21 A N CYS 22 A N CYS 22 A O VAL 84 A O VAL 84 A N GLN 87 A N GLN 87 A O ALA 74 A O ALA 74 A O ARG 64 A O ARG 64 A N THR 50 A N THR 50 A N ILE 51 A N ILE 51 A O ILE 34 A O ILE 34 A N GLN 39 A N GLN 39 A O VAL 98 A O VAL 98 A N ALA 103 A N ALA 103 A O TYR 118 A O TYR 118 A O ARG 64 A O ARG 64 A N THR 50 A N THR 50 A N ILE 51 A N ILE 51 A O ILE 34 A O ILE 34 A N GLN 39 A N GLN 39 A O VAL 98 A O VAL 98 A N TYR 99 A N TYR 99 A O THR 123 A O THR 123 A O GLN 124 A O GLN 124 A N GLY 10 A N GLY 10 1 A A O O HOH HOH 340 340 2.07 1_555 2_655 1 A ALA 97 171.43 168.98 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP RR1_240399.PARAM RR1_240399.TOP SO4.PARAM SO4.TOP 32.2 5.94 5.75 0.00 5.94 0.00 -11.87 0.266 0.008 0.232 0.232 1.95 18.50 1194 0 15003 8.0 99.3 RANDOM 2310814.65 0.00 1 RESTRAINED THROUGHOUT 0 0 MOLECULAR REPLACEMENT VHH52 anti-R1 unliganded FLAT MODEL 51.87 0.364 0.32 0.27 5.00 0.27 0.23 1.95 18.50 164 1186 45 0 977 0.007 1.5 24.6 0.71 1.24 1.50 2.11 2.00 1.67 2.00 2.38 2.50 0.305 0.026 0.29 2.02 133 1319 0 6 9.2 54.4 20.7 1.95 30 1I3U 189080 15022 0 0 0.057 1 4.7 2.7 99.7 1.95 2.00 4.7 1088 0.144 2.7 99.7 data reduction DENZO data scaling SCALA phasing AMoRE refinement CNS 1.0 data scaling CCP4 (SCALA) THREE-DIMENSIONAL STRUCTURE OF A LLAMA VHH DOMAIN COMPLEXED WITH THE DYE RR1 1 N N 2 N N 3 N N 4 N N A SER 28 A SER 28 HELX_P A TYR 32 A TYR 32 5 1 5 A ASN 79 A ASN 79 HELX_P A LYS 81 A LYS 81 5 2 3 A LYS 92 A LYS 92 HELX_P A THR 96 A THR 96 5 3 5 A ASP 112 A ASP 112 HELX_P A TRP 116 A TRP 116 5 4 5 disulf 2.032 A CYS 22 A SG CYS 22 1_555 A CYS 101 A SG CYS 101 1_555 covale 1.324 one A CGN 1 A C CGN 1 1_555 A VAL 2 A N VAL 2 1_555 IMMUNE SYSTEM antibody, VHH fragment, Lama glama, IMMUNE SYSTEM 1I3U PDB 1 1I3U 1 127 1I3U 1 127 1I3U A 1 1 127 4 5 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A GLN 3 A GLN 3 A SER 7 A SER 7 A LEU 18 A LEU 18 A SER 25 A SER 25 A THR 83 A THR 83 A MET 88 A MET 88 A PHE 73 A PHE 73 A ASP 78 A ASP 78 A PHE 61 A PHE 61 A TYR 65 A TYR 65 A ILE 46 A ILE 46 A LEU 55 A LEU 55 A VAL 33 A VAL 33 A GLN 39 A GLN 39 A ALA 97 A ALA 97 A LYS 104 A LYS 104 A TYR 118 A TYR 118 A TRP 119 A TRP 119 A PHE 61 A PHE 61 A TYR 65 A TYR 65 A ILE 46 A ILE 46 A LEU 55 A LEU 55 A VAL 33 A VAL 33 A GLN 39 A GLN 39 A ALA 97 A ALA 97 A LYS 104 A LYS 104 A THR 123 A THR 123 A THR 126 A THR 126 A GLY 10 A GLY 10 A LEU 11 A LEU 11 BINDING SITE FOR RESIDUE SO4 A 402 A SO4 402 Software 2 BINDING SITE FOR RESIDUE RR1 A 401 A RR1 401 Software 17 A GLN 39 A GLN 39 2 1_555 A ARG 45 A ARG 45 2 1_555 A THR 50 A THR 50 17 1_555 A GLY 52 A GLY 52 17 1_555 A ARG 53 A ARG 53 17 1_555 A ASN 54 A ASN 54 17 1_555 A LEU 55 A LEU 55 17 1_555 A LEU 55 A LEU 55 17 16_545 A GLY 57 A GLY 57 17 16_545 A PRO 58 A PRO 58 17 16_545 A TYR 62 A TYR 62 17 1_555 A ARG 64 A ARG 64 17 1_555 A LYS 104 A LYS 104 17 1_555 A THR 107 A THR 107 17 1_555 A TRP 108 A TRP 108 17 1_555 A GLY 109 A GLY 109 17 1_555 A GLY 110 A GLY 110 17 1_555 A HOH 243 D HOH 17 1_555 A HOH 267 D HOH 17 1_555 155 H 3 2