0.021271
0.000000
0.000000
0.000000
0.021271
0.000000
0.000000
0.000000
0.006236
0.00000
0.00000
0.00000
Robinson, H.
Gao, Y.-G.
Yang, X.-L.
Sanishvili, R.
Joachimiak, A.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.00
90.00
90.00
47.013
47.013
160.368
C9 H12 Br N2 O8 P
387.078
n
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
n
N-METHYLVALINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C16 H12 N2 O4
296.277
2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
PHENOXAZINE
non-polymer
C3 H7 N O2
89.093
n
SARCOSINE
peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
BR
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
O
N
35
N
P
N
36
N
O
N
37
N
O
N
38
N
O
N
39
N
C
N
40
R
C
N
41
N
O
N
42
S
C
N
43
N
O
N
44
N
C
N
45
R
C
Y
46
N
N
Y
47
N
C
Y
48
N
N
Y
49
N
C
Y
50
N
C
N
51
N
N
Y
52
N
N
Y
53
N
C
Y
54
N
N
Y
55
N
C
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
O
N
71
N
P
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
C
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
N
C
N
81
R
C
N
82
N
N
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
C
N
87
N
N
N
88
N
C
N
89
N
C
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
O
N
105
N
P
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
C
N
110
R
C
N
111
N
O
N
112
S
C
N
113
N
O
N
114
N
C
N
115
R
C
Y
116
N
N
Y
117
N
C
Y
118
N
N
Y
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
C
N
124
N
N
N
125
N
N
Y
126
N
C
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
O
N
142
N
P
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
C
N
147
R
C
N
148
N
O
N
149
S
C
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
N
N
154
N
C
N
155
N
O
N
156
N
N
N
157
N
C
N
158
N
O
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
R
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
N
N
200
N
C
N
201
S
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
Y
238
N
C
N
239
N
C
N
240
N
O
Y
241
N
C
N
242
N
N
Y
243
N
C
N
244
N
O
Y
245
N
C
Y
246
N
O
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
N
251
N
C
N
252
N
O
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
C
N
259
N
C
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
R
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
Y
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
Y
63
N
sing
Y
64
N
doub
N
65
N
sing
Y
66
N
doub
N
67
N
sing
N
68
N
sing
Y
69
N
sing
Y
70
N
doub
N
71
N
sing
Y
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
Y
131
N
sing
Y
132
N
sing
Y
133
N
doub
N
134
N
sing
Y
135
N
sing
N
136
N
sing
Y
137
N
doub
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
Y
243
N
doub
Y
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
Y
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
Y
256
N
sing
Y
257
N
doub
Y
258
N
sing
N
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
doub
N
263
N
sing
N
264
N
sing
Y
265
N
sing
N
266
N
doub
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
Y
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
40
5587
10.1021/BI002859Z
11341823
Crystallographic Analysis of a Novel Complex of Actinomycin D Bound to the DNA Decamer Cgatcgatcg.
2001
10.2210/pdb1i3w/pdb
pdb_00001i3w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110.0
1
CCD
1999-02-26
CUSTOM-MADE
SAGITALLY FOCUSED SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9530
1.0
19-ID
APS
0.9530
SYNCHROTRON
APS BEAMLINE 19-ID
3109.874
5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*GP)-3'
4
syn
polymer
1259.447
ACTINOMYCIN D
4
nat
polymer
18.015
water
188
nat
water
DACTINOMYCIN
no
yes
(DC)(DG)(DA)(DT)(DC)(DG)(DA)(BRU)(DC)(DG)
CGATCGAUCG
A,B,C,D
polydeoxyribonucleotide
no
yes
T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)
TVPGVXTVPGV
E,F,G,H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1890
STREPTOMYCES ANTIBIOTICUS
1
3.49
64.74
4.5
GLYCINE BUFFER, BARIUM CHLORIDE, SPERMINE, PEG400, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
glycine buffer
1
barium chloride
1
spermine
1
PEG 400
1
6.034
1
19
A
5
B
20
-1.023
A_DC5:DG20_B
1
5.772
0.234
0.227
-0.151
-9.161
1
19
A
6
B
19
3.966
A_DG6:DC19_B
2
-9.936
-0.298
-0.317
-0.145
-5.608
1
20
A
7
B
18
2.450
A_DA7:BRU18_B
3
-8.756
0.085
-0.111
-0.104
12.238
1
20
A
8
B
17
1.803
A_BRU8:DA17_B
4
-7.010
-0.176
-0.287
-0.074
8.666
1
19
A
9
B
16
2.954
A_DC9:DG16_B
5
-10.911
0.221
-0.371
-0.293
-6.028
1
19
A
10
B
15
-1.740
A_DG10:DC15_B
6
4.633
-0.265
0.071
-0.184
6.483
1
19
C
25
D
40
-3.125
C_DC25:DG40_D
7
5.879
0.157
0.438
-0.235
-6.797
1
19
C
26
D
39
1.402
C_DG26:DC39_D
8
-7.785
0.012
-0.139
-0.254
3.471
1
20
C
27
D
38
1.335
C_DA27:BRU38_D
9
-12.089
0.106
0.231
0.004
5.433
1
20
C
28
D
37
-1.241
C_BRU28:DA37_D
10
-8.623
-0.248
0.010
-0.131
7.992
1
19
C
29
D
36
2.605
C_DC29:DG36_D
11
-13.398
0.383
-0.206
-0.244
-5.281
1
19
C
30
D
35
0.345
C_DG30:DC35_D
12
1.834
-0.321
0.166
-0.153
6.840
27.596
A
A
5
6
-3.344
B
B
20
19
6.665
-1.571
-1.812
0.942
AA_DC5DG6:DC19DG20_BB
1
-8.263
17.593
26.306
2.784
-0.464
3.242
35.184
A
A
6
7
13.751
B
B
19
18
3.205
8.225
-0.591
0.343
AA_DG6DA7:BRU18DC19_BB
2
-3.708
6.199
34.043
-0.662
0.423
2.806
30.725
A
A
7
8
2.191
B
B
18
17
2.819
1.161
0.261
-0.440
AA_DA7BRU8:DA17BRU18_BB
3
0.695
-1.313
30.696
-1.027
-0.375
3.351
37.968
A
A
8
9
8.330
B
B
17
16
3.353
5.400
0.201
0.170
AA_BRU8DC9:DG16DA17_BB
4
2.058
-3.175
37.542
-0.448
-0.038
6.866
25.508
A
A
9
10
-2.575
B
B
16
15
6.799
-1.117
1.485
1.155
AA_DC9DG10:DC15DG16_BB
5
8.117
-18.706
24.176
3.302
1.615
6.992
28.292
C
C
25
26
2.098
D
D
40
39
6.728
1.009
-1.879
0.444
CC_DC25DG26:DC39DG40_DD
6
-8.810
18.321
26.893
0.405
-0.553
3.053
32.659
C
C
26
27
6.740
D
D
39
38
3.045
3.767
-0.380
0.046
CC_DG26DA27:BRU38DC39_DD
7
-5.107
9.138
32.053
-0.533
-0.158
3.325
29.320
C
C
27
28
-4.137
D
D
38
37
3.285
-2.091
0.104
-0.678
CC_DA27BRU28:DA37BRU38_DD
8
1.830
-3.620
29.191
-0.882
0.194
3.143
41.425
C
C
28
29
6.550
D
D
37
36
3.146
4.619
0.311
0.005
CC_BRU28DC29:DG36DA37_DD
9
3.318
-4.704
41.050
-0.469
-0.098
6.865
24.443
C
C
29
30
0.637
D
D
36
35
6.763
0.262
1.608
0.987
CC_DC29DG30:DC35DG36_DD
10
9.651
-23.416
22.482
2.153
2.734
pdbx_validate_polymer_linkage
software
struct_conn
struct_ref_seq
atom_site
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Advisory
Data collection
Database references
Derived calculations
Refinement description
Atomic model
Data collection
Database references
Derived calculations
1
0
2001-05-21
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
1
5
2019-07-24
2
0
2023-11-15
_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
CRYSTAL STRUCTURE OF ACTINOMYCIN Z3
CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2
CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA
CRYSTAL STRUCTURE OF ACTINOMYCIN D
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)
CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2
CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2
SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN X2
RCSB
Y
RCSB
2001-02-17
REL
REL
HOH
water
ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE
ACTINOMYCIN FAMILY.
HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
Antibiotic
ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PXZ)
Actinomycin D
Polypeptide
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
HOH
2001
3
HOH
HOH
2001
C
HOH
2002
3
HOH
HOH
2002
C
HOH
2003
3
HOH
HOH
2003
C
HOH
2004
3
HOH
HOH
2004
C
HOH
2005
3
HOH
HOH
2005
C
HOH
2006
3
HOH
HOH
2006
C
HOH
2007
3
HOH
HOH
2007
C
HOH
2008
3
HOH
HOH
2008
C
HOH
2009
3
HOH
HOH
2009
C
HOH
2010
3
HOH
HOH
2010
C
HOH
2011
3
HOH
HOH
2011
C
HOH
2012
3
HOH
HOH
2012
C
HOH
2013
3
HOH
HOH
2013
C
HOH
2014
3
HOH
HOH
2014
C
HOH
2015
3
HOH
HOH
2015
C
HOH
2016
3
HOH
HOH
2016
C
HOH
2017
3
HOH
HOH
2017
C
HOH
2018
3
HOH
HOH
2018
C
HOH
2019
3
HOH
HOH
2019
C
HOH
2020
3
HOH
HOH
2020
C
HOH
2021
3
HOH
HOH
2021
C
HOH
2022
3
HOH
HOH
2022
C
HOH
2023
3
HOH
HOH
2023
C
HOH
2024
3
HOH
HOH
2024
C
HOH
2025
3
HOH
HOH
2025
C
HOH
2026
3
HOH
HOH
2026
C
HOH
2027
3
HOH
HOH
2027
C
HOH
2028
3
HOH
HOH
2028
C
HOH
2029
3
HOH
HOH
2029
C
HOH
2030
3
HOH
HOH
2030
C
HOH
2031
3
HOH
HOH
2031
C
HOH
2032
3
HOH
HOH
2032
C
HOH
2033
3
HOH
HOH
2033
C
HOH
2001
3
HOH
HOH
2001
D
HOH
2002
3
HOH
HOH
2002
D
HOH
2003
3
HOH
HOH
2003
D
HOH
2004
3
HOH
HOH
2004
D
HOH
2005
3
HOH
HOH
2005
D
HOH
2006
3
HOH
HOH
2006
D
HOH
2007
3
HOH
HOH
2007
D
HOH
2008
3
HOH
HOH
2008
D
HOH
2009
3
HOH
HOH
2009
D
HOH
2010
3
HOH
HOH
2010
D
HOH
2011
3
HOH
HOH
2011
D
HOH
2012
3
HOH
HOH
2012
D
HOH
2013
3
HOH
HOH
2013
D
HOH
2014
3
HOH
HOH
2014
D
HOH
2015
3
HOH
HOH
2015
D
HOH
2016
3
HOH
HOH
2016
D
HOH
2017
3
HOH
HOH
2017
D
HOH
2018
3
HOH
HOH
2018
D
HOH
2019
3
HOH
HOH
2019
D
HOH
2020
3
HOH
HOH
2020
D
HOH
2021
3
HOH
HOH
2021
D
HOH
2022
3
HOH
HOH
2022
D
HOH
2023
3
HOH
HOH
2023
D
HOH
2024
3
HOH
HOH
2024
D
HOH
2025
3
HOH
HOH
2025
D
HOH
2026
3
HOH
HOH
2026
D
HOH
2027
3
HOH
HOH
2027
D
HOH
2028
3
HOH
HOH
2028
D
HOH
2029
3
HOH
HOH
2029
D
HOH
2030
3
HOH
HOH
2030
D
HOH
2031
3
HOH
HOH
2031
D
HOH
2032
3
HOH
HOH
2032
D
HOH
2033
3
HOH
HOH
2033
D
HOH
2034
3
HOH
HOH
2034
D
HOH
2035
3
HOH
HOH
2035
D
HOH
2036
3
HOH
HOH
2036
D
HOH
2037
3
HOH
HOH
2037
D
HOH
2038
3
HOH
HOH
2038
D
HOH
2039
3
HOH
HOH
2039
D
HOH
2040
3
HOH
HOH
2040
D
HOH
2041
3
HOH
HOH
2041
D
HOH
2042
3
HOH
HOH
2042
D
HOH
2043
3
HOH
HOH
2043
D
HOH
2044
3
HOH
HOH
2044
D
HOH
2001
3
HOH
HOH
2001
E
HOH
2002
3
HOH
HOH
2002
E
HOH
2003
3
HOH
HOH
2003
E
HOH
2004
3
HOH
HOH
2004
E
HOH
2005
3
HOH
HOH
2005
E
HOH
2006
3
HOH
HOH
2006
E
HOH
2007
3
HOH
HOH
2007
E
HOH
2008
3
HOH
HOH
2008
E
HOH
2009
3
HOH
HOH
2009
E
HOH
2001
3
HOH
HOH
2001
F
HOH
2002
3
HOH
HOH
2002
F
HOH
2003
3
HOH
HOH
2003
F
HOH
2004
3
HOH
HOH
2004
F
HOH
2005
3
HOH
HOH
2005
F
HOH
2006
3
HOH
HOH
2006
F
HOH
2007
3
HOH
HOH
2007
F
HOH
2008
3
HOH
HOH
2008
F
HOH
2009
3
HOH
HOH
2009
F
HOH
2001
3
HOH
HOH
2001
G
HOH
2002
3
HOH
HOH
2002
G
HOH
2003
3
HOH
HOH
2003
G
HOH
2004
3
HOH
HOH
2004
G
HOH
2005
3
HOH
HOH
2005
G
HOH
2006
3
HOH
HOH
2006
G
HOH
2007
3
HOH
HOH
2007
G
HOH
2008
3
HOH
HOH
2008
G
HOH
2009
3
HOH
HOH
2009
G
HOH
2010
3
HOH
HOH
2010
G
HOH
2001
3
HOH
HOH
2001
H
HOH
2002
3
HOH
HOH
2002
H
HOH
2003
3
HOH
HOH
2003
H
HOH
2004
3
HOH
HOH
2004
H
HOH
2005
3
HOH
HOH
2005
H
HOH
2006
3
HOH
HOH
2006
H
HOH
2007
3
HOH
HOH
2007
H
n
1
1
A
DG
2
n
2
DG
2
A
DA
3
n
3
DA
3
A
DT
4
n
4
DT
4
A
DC
5
n
5
DC
5
A
DG
6
n
6
DG
6
A
DA
7
n
7
DA
7
A
BRU
8
n
8
BRU
8
A
DC
9
n
9
DC
9
A
DG
10
n
10
DG
10
A
DC
11
n
1
DC
11
B
DG
12
n
2
DG
12
B
DA
13
n
3
DA
13
B
DT
14
n
4
DT
14
B
DC
15
n
5
DC
15
B
DG
16
n
6
DG
16
B
DA
17
n
7
DA
17
B
BRU
18
n
8
BRU
18
B
DC
19
n
9
DC
19
B
DG
20
n
10
DG
20
B
n
1
21
C
DG
22
n
2
DG
22
C
DA
23
n
3
DA
23
C
DT
24
n
4
DT
24
C
DC
25
n
5
DC
25
C
DG
26
n
6
DG
26
C
DA
27
n
7
DA
27
C
BRU
28
n
8
BRU
28
C
DC
29
n
9
DC
29
C
DG
30
n
10
DG
30
C
DC
31
n
1
DC
31
D
DG
32
n
2
DG
32
D
DA
33
n
3
DA
33
D
DT
34
n
4
DT
34
D
DC
35
n
5
DC
35
D
DG
36
n
6
DG
36
D
DA
37
n
7
DA
37
D
BRU
38
n
8
BRU
38
D
DC
39
n
9
DC
39
D
DG
40
n
10
DG
40
D
THR
1
n
1
THR
1
E
DVA
2
n
2
DVA
2
E
PRO
3
n
3
PRO
3
E
SAR
4
n
4
SAR
4
E
MVA
5
n
5
MVA
5
E
PXZ
6
n
6
PXZ
6
E
THR
7
n
7
THR
7
E
DVA
8
n
8
DVA
8
E
PRO
9
n
9
PRO
9
E
SAR
10
n
10
SAR
10
E
MVA
11
n
11
MVA
11
E
THR
1
n
1
THR
1
F
DVA
2
n
2
DVA
2
F
PRO
3
n
3
PRO
3
F
SAR
4
n
4
SAR
4
F
MVA
5
n
5
MVA
5
F
PXZ
6
n
6
PXZ
6
F
THR
7
n
7
THR
7
F
DVA
8
n
8
DVA
8
F
PRO
9
n
9
PRO
9
F
SAR
10
n
10
SAR
10
F
MVA
11
n
11
MVA
11
F
THR
1
n
1
THR
1
G
DVA
2
n
2
DVA
2
G
PRO
3
n
3
PRO
3
G
SAR
4
n
4
SAR
4
G
MVA
5
n
5
MVA
5
G
PXZ
6
n
6
PXZ
6
G
THR
7
n
7
THR
7
G
DVA
8
n
8
DVA
8
G
PRO
9
n
9
PRO
9
G
SAR
10
n
10
SAR
10
G
MVA
11
n
11
MVA
11
G
THR
1
n
1
THR
1
H
DVA
2
n
2
DVA
2
H
PRO
3
n
3
PRO
3
H
SAR
4
n
4
SAR
4
H
MVA
5
n
5
MVA
5
H
PXZ
6
n
6
PXZ
6
H
THR
7
n
7
THR
7
H
DVA
8
n
8
DVA
8
H
PRO
9
n
9
PRO
9
H
SAR
10
n
10
SAR
10
H
MVA
11
n
11
MVA
11
H
0.231
0.239
0.230
0.237
0.270
0.279
839
980
5.200
5.000
16195
author_defined_assembly
4
tetrameric
author_defined_assembly
4
tetrameric
A
BRU
8
URACIL MODIFIED WITH BR
A
BRU
8
U
B
BRU
18
URACIL MODIFIED WITH BR
B
BRU
8
U
C
BRU
28
URACIL MODIFIED WITH BR
C
BRU
8
U
D
BRU
38
URACIL MODIFIED WITH BR
D
BRU
8
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
P
DG
2
A
P
DG
2
1
Y
1
A
OP1
DG
2
A
OP1
DG
2
1
Y
1
A
OP2
DG
2
A
OP2
DG
2
1
Y
1
C
P
DG
22
C
P
DG
2
1
Y
1
C
OP1
DG
22
C
OP1
DG
2
1
Y
1
C
OP2
DG
22
C
OP2
DG
2
1
Y
1
A
DC
1
A
DC
1
1
Y
1
C
DC
21
C
DC
1
1
Y
1
E
E
DVA
PRO
8
9
30.64
1
G
G
DVA
PRO
2
3
35.76
1
A
DA
3
0.075
SIDE CHAIN
1
A
DG
10
0.051
SIDE CHAIN
1
B
DC
11
0.072
SIDE CHAIN
1
B
DA
13
0.066
SIDE CHAIN
1
B
DT
14
0.095
SIDE CHAIN
1
B
DG
20
0.055
SIDE CHAIN
1
C
DG
22
0.085
SIDE CHAIN
1
C
DA
23
0.074
SIDE CHAIN
1
C
DG
26
0.076
SIDE CHAIN
1
D
DG
32
0.076
SIDE CHAIN
1
D
DT
34
0.061
SIDE CHAIN
1
D
DG
40
0.068
SIDE CHAIN
1
-8.32
1.30
127.00
118.68
A
A
A
C8
N9
C1'
DG
DG
DG
2
2
2
N
1
-5.89
0.80
109.40
103.51
A
A
A
O5'
C5'
C4'
DC
DC
DC
5
5
5
N
1
10.87
1.60
120.90
131.77
A
A
A
P
O5'
C5'
DC
DC
DC
5
5
5
N
1
2.59
0.40
120.30
122.89
A
A
A
C6
N1
C2
DC
DC
DC
5
5
5
N
1
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
-4.96
0.80
109.40
104.44
A
A
A
O5'
C5'
C4'
DG
DG
DG
10
10
10
N
1
2.41
0.30
108.30
110.71
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
3.61
0.30
108.30
111.91
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
-7.92
1.20
119.70
111.78
B
B
B
C3'
O3'
P
BRU
BRU
DC
18
18
19
Y
1
-5.15
0.60
126.00
120.85
B
B
B
N3
C4
N9
DG
DG
DG
20
20
20
N
1
3.08
0.50
128.60
131.68
C
C
C
N3
C4
C5
DG
DG
DG
26
26
26
N
1
-5.48
0.80
109.40
103.92
D
D
D
O5'
C5'
C4'
DT
DT
DT
34
34
34
N
1
-3.81
0.60
118.90
115.09
D
D
D
N1
C2
O2
DC
DC
DC
35
35
35
N
1
-4.74
0.70
108.00
103.26
D
D
D
O4'
C1'
N9
DG
DG
DG
36
36
36
N
1
-2.60
0.40
104.50
101.90
D
D
D
O4'
C4'
C3'
DC
DC
DC
39
39
39
N
1
-3.21
0.40
104.50
101.29
D
D
D
O4'
C4'
C3'
DG
DG
DG
40
40
40
N
1
4.29
0.30
108.30
112.59
D
D
D
O4'
C1'
N9
DG
DG
DG
40
40
40
N
SHELX-97 HOPE
0.279
0.239
0.237
1.70
10.00
980
19747
5.000
95.2
RANDOM 5%
1
A POSTERIORI
0.000
MAD
G. PARKINSON, J. VOJTECHOSKY, L. CLOWNEY, A.T. BRUNGER, H.M. BERMAN
SHELX-97 SWAT
1.70
10.00
188
1318
0
770
360
0.008
0.024
0.068
0.039
0.037
0.008
0.081
1.700
10.000
1I3W
19747
0.000
0.05700
1
23.3000
9.800
95.2
0.53000
1.70
1.76
3.000
1
3.50
88.3
refinement
SHELXL-97
refinement
CNS
data reduction
d*TREK
data scaling
HKL-2000
phasing
CNS
ACTINOMYCIN D BINDING TO CGATCGATCG
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.595
both
A
DA
7
A
O3'
DA
7
1_555
A
BRU
8
A
P
BRU
8
1_555
covale
1.606
both
A
BRU
8
A
O3'
BRU
8
1_555
A
DC
9
A
P
DC
9
1_555
covale
1.596
both
B
DA
17
B
O3'
DA
7
1_555
B
BRU
18
B
P
BRU
8
1_555
covale
1.606
both
B
BRU
18
B
O3'
BRU
8
1_555
B
DC
19
B
P
DC
9
1_555
covale
1.587
both
C
DA
27
C
O3'
DA
7
1_555
C
BRU
28
C
P
BRU
8
1_555
covale
1.575
both
C
BRU
28
C
O3'
BRU
8
1_555
C
DC
29
C
P
DC
9
1_555
covale
1.607
both
D
DA
37
D
O3'
DA
7
1_555
D
BRU
38
D
P
BRU
8
1_555
covale
1.609
both
D
BRU
38
D
O3'
BRU
8
1_555
D
DC
39
D
P
DC
9
1_555
covale
1.329
both
E
THR
1
E
C
THR
1
1_555
E
DVA
2
E
N
DVA
2
1_555
covale
1.336
one
E
THR
1
E
OG1
THR
1
1_555
E
MVA
5
E
C
MVA
5
1_555
covale
1.345
one
E
THR
1
E
N
THR
1
1_555
E
PXZ
6
E
C0
PXZ
6
1_555
covale
1.336
both
E
DVA
2
E
C
DVA
2
1_555
E
PRO
3
E
N
PRO
3
1_555
covale
1.329
both
E
PRO
3
E
C
PRO
3
1_555
E
SAR
4
E
N
SAR
4
1_555
covale
1.333
both
E
SAR
4
E
C
SAR
4
1_555
E
MVA
5
E
N
MVA
5
1_555
covale
1.344
one
E
PXZ
6
E
C0'
PXZ
6
1_555
E
THR
7
E
N
THR
7
1_555
covale
1.324
both
E
THR
7
E
C
THR
7
1_555
E
DVA
8
E
N
DVA
8
1_555
covale
1.333
one
E
THR
7
E
OG1
THR
7
1_555
E
MVA
11
E
C
MVA
11
1_555
covale
1.334
both
E
DVA
8
E
C
DVA
8
1_555
E
PRO
9
E
N
PRO
9
1_555
covale
1.335
both
E
PRO
9
E
C
PRO
9
1_555
E
SAR
10
E
N
SAR
10
1_555
covale
1.329
both
E
SAR
10
E
C
SAR
10
1_555
E
MVA
11
E
N
MVA
11
1_555
covale
1.326
both
F
THR
1
F
C
THR
1
1_555
F
DVA
2
F
N
DVA
2
1_555
covale
1.322
one
F
THR
1
F
OG1
THR
1
1_555
F
MVA
5
F
C
MVA
5
1_555
covale
1.354
one
F
THR
1
F
N
THR
1
1_555
F
PXZ
6
F
C0
PXZ
6
1_555
covale
1.321
both
F
DVA
2
F
C
DVA
2
1_555
F
PRO
3
F
N
PRO
3
1_555
covale
1.336
both
F
PRO
3
F
C
PRO
3
1_555
F
SAR
4
F
N
SAR
4
1_555
covale
1.334
both
F
SAR
4
F
C
SAR
4
1_555
F
MVA
5
F
N
MVA
5
1_555
covale
1.341
one
F
PXZ
6
F
C0'
PXZ
6
1_555
F
THR
7
F
N
THR
7
1_555
covale
1.325
both
F
THR
7
F
C
THR
7
1_555
F
DVA
8
F
N
DVA
8
1_555
covale
1.316
one
F
THR
7
F
OG1
THR
7
1_555
F
MVA
11
F
C
MVA
11
1_555
covale
1.332
both
F
DVA
8
F
C
DVA
8
1_555
F
PRO
9
F
N
PRO
9
1_555
covale
1.340
both
F
PRO
9
F
C
PRO
9
1_555
F
SAR
10
F
N
SAR
10
1_555
covale
1.325
both
F
SAR
10
F
C
SAR
10
1_555
F
MVA
11
F
N
MVA
11
1_555
covale
1.329
both
G
THR
1
G
C
THR
1
1_555
G
DVA
2
G
N
DVA
2
1_555
covale
1.330
one
G
THR
1
G
OG1
THR
1
1_555
G
MVA
5
G
C
MVA
5
1_555
covale
1.335
one
G
THR
1
G
N
THR
1
1_555
G
PXZ
6
G
C0
PXZ
6
1_555
covale
1.348
both
G
DVA
2
G
C
DVA
2
1_555
G
PRO
3
G
N
PRO
3
1_555
covale
1.336
both
G
PRO
3
G
C
PRO
3
1_555
G
SAR
4
G
N
SAR
4
1_555
covale
1.331
both
G
SAR
4
G
C
SAR
4
1_555
G
MVA
5
G
N
MVA
5
1_555
covale
1.335
one
G
PXZ
6
G
C0'
PXZ
6
1_555
G
THR
7
G
N
THR
7
1_555
covale
1.332
both
G
THR
7
G
C
THR
7
1_555
G
DVA
8
G
N
DVA
8
1_555
covale
1.322
one
G
THR
7
G
OG1
THR
7
1_555
G
MVA
11
G
C
MVA
11
1_555
covale
1.327
both
G
DVA
8
G
C
DVA
8
1_555
G
PRO
9
G
N
PRO
9
1_555
covale
1.339
both
G
PRO
9
G
C
PRO
9
1_555
G
SAR
10
G
N
SAR
10
1_555
covale
1.335
both
G
SAR
10
G
C
SAR
10
1_555
G
MVA
11
G
N
MVA
11
1_555
covale
1.328
both
H
THR
1
H
C
THR
1
1_555
H
DVA
2
H
N
DVA
2
1_555
covale
1.336
one
H
THR
1
H
OG1
THR
1
1_555
H
MVA
5
H
C
MVA
5
1_555
covale
1.355
one
H
THR
1
H
N
THR
1
1_555
H
PXZ
6
H
C0
PXZ
6
1_555
covale
1.335
both
H
DVA
2
H
C
DVA
2
1_555
H
PRO
3
H
N
PRO
3
1_555
covale
1.327
both
H
PRO
3
H
C
PRO
3
1_555
H
SAR
4
H
N
SAR
4
1_555
covale
1.333
both
H
SAR
4
H
C
SAR
4
1_555
H
MVA
5
H
N
MVA
5
1_555
covale
1.345
one
H
PXZ
6
H
C0'
PXZ
6
1_555
H
THR
7
H
N
THR
7
1_555
covale
1.320
both
H
THR
7
H
C
THR
7
1_555
H
DVA
8
H
N
DVA
8
1_555
covale
1.327
one
H
THR
7
H
OG1
THR
7
1_555
H
MVA
11
H
C
MVA
11
1_555
covale
1.331
both
H
DVA
8
H
C
DVA
8
1_555
H
PRO
9
H
N
PRO
9
1_555
covale
1.325
both
H
PRO
9
H
C
PRO
9
1_555
H
SAR
10
H
N
SAR
10
1_555
covale
1.325
both
H
SAR
10
H
C
SAR
10
1_555
H
MVA
11
H
N
MVA
11
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
19
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
19
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
19
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
BRU
18
B
N3
BRU
8
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
BRU
18
B
O4
BRU
8
1_555
hydrog
WATSON-CRICK
A
BRU
8
A
N3
BRU
8
1_555
B
DA
17
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
BRU
8
A
O4
BRU
8
1_555
B
DA
17
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
15
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
15
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
15
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DC
25
C
N3
DC
5
1_555
D
DG
40
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
25
C
N4
DC
5
1_555
D
DG
40
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
C
DC
25
C
O2
DC
5
1_555
D
DG
40
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
C
DG
26
C
N1
DG
6
1_555
D
DC
39
D
N3
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
26
C
N2
DG
6
1_555
D
DC
39
D
O2
DC
9
1_555
hydrog
WATSON-CRICK
C
DG
26
C
O6
DG
6
1_555
D
DC
39
D
N4
DC
9
1_555
hydrog
WATSON-CRICK
C
DA
27
C
N1
DA
7
1_555
D
BRU
38
D
N3
BRU
8
1_555
hydrog
WATSON-CRICK
C
DA
27
C
N6
DA
7
1_555
D
BRU
38
D
O4
BRU
8
1_555
hydrog
WATSON-CRICK
C
BRU
28
C
N3
BRU
8
1_555
D
DA
37
D
N1
DA
7
1_555
hydrog
WATSON-CRICK
C
BRU
28
C
O4
BRU
8
1_555
D
DA
37
D
N6
DA
7
1_555
hydrog
WATSON-CRICK
C
DC
29
C
N3
DC
9
1_555
D
DG
36
D
N1
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
29
C
N4
DC
9
1_555
D
DG
36
D
O6
DG
6
1_555
hydrog
WATSON-CRICK
C
DC
29
C
O2
DC
9
1_555
D
DG
36
D
N2
DG
6
1_555
hydrog
WATSON-CRICK
C
DG
30
C
N1
DG
10
1_555
D
DC
35
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
30
C
N2
DG
10
1_555
D
DC
35
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
30
C
O6
DG
10
1_555
D
DC
35
D
N4
DC
5
1_555
DNA/ANTIBIOTIC
ACTINOMYCIN D, ACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, MISMATCH, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX
E
DVA
2
E
DVA
2
1
E
PRO
3
E
PRO
3
23.54
E
PRO
3
E
PRO
3
1
E
SAR
4
E
SAR
4
-6.40
E
PRO
9
E
PRO
9
1
E
SAR
10
E
SAR
10
1.34
F
DVA
2
F
DVA
2
1
F
PRO
3
F
PRO
3
-1.17
F
PRO
3
F
PRO
3
1
F
SAR
4
F
SAR
4
8.43
F
DVA
8
F
DVA
8
1
F
PRO
9
F
PRO
9
22.23
F
PRO
9
F
PRO
9
1
F
SAR
10
F
SAR
10
-7.73
G
PRO
3
G
PRO
3
1
G
SAR
4
G
SAR
4
-7.83
G
DVA
8
G
DVA
8
1
G
PRO
9
G
PRO
9
8.84
G
PRO
9
G
PRO
9
1
G
SAR
10
G
SAR
10
7.51
H
DVA
2
H
DVA
2
1
H
PRO
3
H
PRO
3
14.07
H
PRO
3
H
PRO
3
1
H
SAR
4
H
SAR
4
-8.14
H
DVA
8
H
DVA
8
1
H
PRO
9
H
PRO
9
13.09
H
PRO
9
H
PRO
9
1
H
SAR
10
H
SAR
10
-6.56
1I3W
PDB
1
1I3W
NOR00228
NOR
2
NOR00228
1
10
1I3W
1
10
1I3W
A
1
1
10
11
20
1I3W
11
20
1I3W
B
1
1
10
21
30
1I3W
21
30
1I3W
C
1
1
10
31
40
1I3W
31
40
1I3W
D
1
1
10
1
11
1I3W
1
11
NOR00228
E
2
1
11
1
11
1I3W
1
11
NOR00228
F
2
1
11
1
11
1I3W
1
11
NOR00228
G
2
1
11
1
11
1I3W
1
11
NOR00228
H
2
1
11
BINDING SITE FOR CHAIN E OF ACTINOMYCIN D
Software
12
BINDING SITE FOR CHAIN F OF ACTINOMYCIN D
Software
15
BINDING SITE FOR CHAIN G OF ACTINOMYCIN D
Software
10
BINDING SITE FOR CHAIN H OF ACTINOMYCIN D
Software
15
A
DG
2
A
DG
2
12
1_555
A
DA
3
A
DA
3
12
1_555
A
DC
5
A
DC
5
12
1_555
A
DG
6
A
DG
6
12
1_555
B
DC
11
B
DC
1
12
4_555
B
DC
19
B
DC
9
12
1_555
B
DG
20
B
DG
10
12
1_555
C
DT
24
C
DT
4
12
1_555
E
HOH
2005
M
HOH
12
1_555
E
HOH
2006
M
HOH
12
1_555
E
HOH
2008
M
HOH
12
1_555
E
HOH
2009
M
HOH
12
1_555
A
DG
2
A
DG
2
15
3_544
A
DC
9
A
DC
9
15
1_555
A
DG
10
A
DG
10
15
1_555
B
DC
11
B
DC
1
15
1_555
B
DG
12
B
DG
2
15
1_555
B
DA
13
B
DA
3
15
1_555
B
DC
15
B
DC
5
15
1_555
B
DG
16
B
DG
6
15
1_555
D
DT
34
D
DT
4
15
1_555
F
HOH
2004
N
HOH
15
1_555
F
HOH
2006
N
HOH
15
1_555
F
HOH
2007
N
HOH
15
1_555
F
HOH
2008
N
HOH
15
1_555
F
HOH
2009
N
HOH
15
1_555
H
MVA
11
H
MVA
11
15
7_545
A
DT
4
A
DT
4
10
1_555
C
DG
22
C
DG
2
10
1_555
C
DA
23
C
DA
3
10
1_555
C
DC
25
C
DC
5
10
1_555
C
DG
26
C
DG
6
10
1_555
D
DC
31
D
DC
1
10
4_565
D
DG
40
D
DG
10
10
1_555
G
HOH
2007
O
HOH
10
1_555
G
HOH
2008
O
HOH
10
1_555
G
HOH
2010
O
HOH
10
1_555
B
DT
14
B
DT
4
15
1_555
C
DG
22
C
DG
2
15
3_644
C
DG
30
C
DG
10
15
1_555
D
DC
31
D
DC
1
15
1_555
D
DG
32
D
DG
2
15
1_555
D
DA
33
D
DA
3
15
1_555
D
DC
35
D
DC
5
15
1_555
D
DG
36
D
DG
6
15
1_555
F
MVA
11
F
MVA
11
15
7_655
H
HOH
2001
P
HOH
15
1_555
H
HOH
2003
P
HOH
15
1_555
H
HOH
2004
P
HOH
15
1_555
H
HOH
2005
P
HOH
15
1_555
H
HOH
2006
P
HOH
15
1_555
H
HOH
2007
P
HOH
15
1_555
96
P 43 21 2