1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kim, C.-H. Tinoco Jr., I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 307 827 839 10.1006/jmbi.2001.4497 11273704 Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter 2001 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 7 415 423 10.1038/75202 RNA motifs that determine specificity between a viral replicase and its promoter 2000 incorrect carbon chiral center(s) 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5'GUA3' RNA MUTANT TRILOOP 4172.541 5'-R(*GP*GP*UP*GP*CP*GP*UP*AP*GP*CP*AP*CP*C)-3' 1 syn polymer no no GGUGCGUAGCACC GGUGCGUAGCACC A polyribonucleotide n n n n n n n n n n n n n -13.573 1 19 A 1 A 13 -3.552 A_G1:C13_A 1 -4.925 0.043 -1.437 -0.479 -15.149 1 19 A 2 A 12 -5.248 A_G2:C12_A 2 -7.673 -0.152 -0.418 -0.030 11.986 1 20 A 3 A 11 -7.536 A_U3:A11_A 3 -36.292 -0.228 -0.474 -0.340 -0.498 1 19 A 4 A 10 0.055 A_G4:C10_A 4 -17.970 -0.132 -0.297 -0.168 5.122 1 19 A 5 A 9 7.999 A_C5:G9_A 5 -26.912 0.387 -0.774 -0.420 3.223 34.108 A A 1 2 17.213 A A 13 12 3.314 9.850 -1.538 -0.817 AA_G1G2:C12C13_AA 1 -8.672 15.154 31.551 -3.022 1.189 2.546 28.527 A A 2 3 -2.919 A A 12 11 2.587 -1.436 -0.670 -0.512 AA_G2U3:A11C12_AA 2 2.375 -4.827 28.395 -0.782 1.786 3.118 40.489 A A 3 4 32.595 A A 11 10 3.844 21.463 0.784 -0.210 AA_U3G4:C10A11_AA 3 -3.148 4.780 34.396 -3.091 -1.542 2.864 41.170 A A 4 5 3.492 A A 10 9 2.678 2.422 1.139 -0.380 AA_G4C5:G9C10_AA 4 11.981 -17.277 39.389 -0.767 -0.495 repository Initial release Version format compliance Version format compliance Structure summary 1 0 2001-04-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-02-01 the solution structure of the wild type triloop 5'AUA3' of the stemloop C of Brome Mosaic Virus (+) RNA. N RCSB Y RCSB 2001-02-20 REL REL This sequence is a mutant triloop of which wild type sequence is naturally occured in BMV (+) strand RNA sample 1 5mM NaCl 6.5 ambient 283 K simulated annealing molecular dynamics 1 minimized average structure The 5'GUA3' triloop mutant in 5 mM NaPhosphate buffer pH=6.5 5mM Sodium Phosphate buffer pH 6.5, O.1 mM EDTA data analysis FELIX 95 Brunger, A. structure solution X-PLOR 3.1 Brunger, A. refinement X-PLOR 3.1 500 Bruker Avance 600 Bruker AMX G 1 n 1 G 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A G 6 n 6 G 6 A U 7 n 7 U 7 A A 8 n 8 A 8 A G 9 n 9 G 9 A C 10 n 10 C 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A C 13 n 13 C 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HO2' O5' G G 1 2 1.52 5'-R(*GP*GP*UP*GP*CP*GP*UP*AP*GP*CP*AP*CP*C)-3' minimized average The solution structure of the mutant stem loop C 5'GUA3' triloop of brome mosaic virus (+) strand RNA 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 13 A N4 C 13 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 12 A N4 C 12 1_555 hydrog G-C PAIR A G 2 A N1 G 2 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A U 3 A N3 U 3 1_555 A A 11 A N1 A 11 1_555 hydrog WATSON-CRICK A U 3 A O4 U 3 1_555 A A 11 A N6 A 11 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 10 A N4 C 10 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 9 A N1 G 9 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 9 A O6 G 9 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 9 A N2 G 9 1_555 RNA RNA, Triloop, Stem-Loop, Mutant, Replication, BMV 1I46 PDB 1 1I46 1 13 1I46 1 13 1I46 A 1 1 13 1 P 1