1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kim, C.-H.
Tinoco Jr., I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
307
827
839
10.1006/jmbi.2001.4497
11273704
Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter
2001
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
415
423
10.1038/75202
RNA motifs that determine specificity between a viral replicase and its promoter
2000
incorrect carbon chiral center(s)
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5'GUA3' RNA MUTANT TRILOOP
4172.541
5'-R(*GP*GP*UP*GP*CP*GP*UP*AP*GP*CP*AP*CP*C)-3'
1
syn
polymer
no
no
GGUGCGUAGCACC
GGUGCGUAGCACC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-13.573
1
19
A
1
A
13
-3.552
A_G1:C13_A
1
-4.925
0.043
-1.437
-0.479
-15.149
1
19
A
2
A
12
-5.248
A_G2:C12_A
2
-7.673
-0.152
-0.418
-0.030
11.986
1
20
A
3
A
11
-7.536
A_U3:A11_A
3
-36.292
-0.228
-0.474
-0.340
-0.498
1
19
A
4
A
10
0.055
A_G4:C10_A
4
-17.970
-0.132
-0.297
-0.168
5.122
1
19
A
5
A
9
7.999
A_C5:G9_A
5
-26.912
0.387
-0.774
-0.420
3.223
34.108
A
A
1
2
17.213
A
A
13
12
3.314
9.850
-1.538
-0.817
AA_G1G2:C12C13_AA
1
-8.672
15.154
31.551
-3.022
1.189
2.546
28.527
A
A
2
3
-2.919
A
A
12
11
2.587
-1.436
-0.670
-0.512
AA_G2U3:A11C12_AA
2
2.375
-4.827
28.395
-0.782
1.786
3.118
40.489
A
A
3
4
32.595
A
A
11
10
3.844
21.463
0.784
-0.210
AA_U3G4:C10A11_AA
3
-3.148
4.780
34.396
-3.091
-1.542
2.864
41.170
A
A
4
5
3.492
A
A
10
9
2.678
2.422
1.139
-0.380
AA_G4C5:G9C10_AA
4
11.981
-17.277
39.389
-0.767
-0.495
repository
Initial release
Version format compliance
Version format compliance
Structure summary
1
0
2001-04-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-02-01
the solution structure of the wild type triloop 5'AUA3' of the stemloop C of Brome Mosaic Virus (+) RNA.
N
RCSB
Y
RCSB
2001-02-20
REL
REL
This sequence is a mutant triloop of which wild type sequence is naturally occured in BMV (+) strand RNA
sample
1
5mM NaCl
6.5
ambient
283
K
simulated annealing molecular dynamics
1
minimized average structure
The 5'GUA3' triloop mutant in 5 mM NaPhosphate buffer pH=6.5
5mM Sodium Phosphate buffer pH 6.5, O.1 mM EDTA
data analysis
FELIX
95
Brunger, A.
structure solution
X-PLOR
3.1
Brunger, A.
refinement
X-PLOR
3.1
500
Bruker
Avance
600
Bruker
AMX
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
C
5
n
5
C
5
A
G
6
n
6
G
6
A
U
7
n
7
U
7
A
A
8
n
8
A
8
A
G
9
n
9
G
9
A
C
10
n
10
C
10
A
A
11
n
11
A
11
A
C
12
n
12
C
12
A
C
13
n
13
C
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HO2'
O5'
G
G
1
2
1.52
5'-R(*GP*GP*UP*GP*CP*GP*UP*AP*GP*CP*AP*CP*C)-3'
minimized average
The solution structure of the mutant stem loop C 5'GUA3' triloop of brome mosaic virus (+) strand RNA
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
13
A
N4
C
13
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
12
A
N4
C
12
1_555
hydrog
G-C PAIR
A
G
2
A
N1
G
2
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
11
A
N1
A
11
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
11
A
N6
A
11
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
10
A
N4
C
10
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
A
G
9
A
N1
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
A
G
9
A
O6
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
A
G
9
A
N2
G
9
1_555
RNA
RNA, Triloop, Stem-Loop, Mutant, Replication, BMV
1I46
PDB
1
1I46
1
13
1I46
1
13
1I46
A
1
1
13
1
P 1