1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Tinoco Jr., I. Kim, C.-H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 307 827 839 10.1006/jmbi.2001.4497 11273704 Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter 2001 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 7 415 423 10.1038/75202 RNA motifs that determine specificity between a viral Replicase and its promoter 2000 10.2210/pdb1i4b/pdb pdb_00001i4b incorrect carbon chiral center(s) 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 THE MAJOR STRUCTURAL FAMILY OF 5'UUA3' MUTANT TRILOOP 4133.501 5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3' 1 syn polymer no no GGUGCUUAGCACC GGUGCUUAGCACC A polyribonucleotide n n n n n n n n n n n n n -20.151 1 19 A 1 A 13 -4.573 A_G1:C13_A 1 -6.450 -0.209 -0.619 -0.238 -10.183 1 19 A 2 A 12 -3.532 A_G2:C12_A 2 -26.185 -0.124 -0.274 -0.246 9.243 1 20 A 3 A 11 -1.804 A_U3:A11_A 3 -26.895 -0.305 -0.789 -0.238 -3.058 1 19 A 4 A 10 0.036 A_G4:C10_A 4 -26.068 -0.164 -0.373 -0.286 -8.165 1 19 A 5 A 9 4.442 A_C5:G9_A 5 -5.941 0.359 -0.721 -0.427 3.138 34.591 A A 1 2 -1.763 A A 13 12 3.102 -1.048 -1.342 -0.991 AA_G1G2:C12C13_AA 1 -0.216 0.364 34.575 -1.513 2.225 2.913 29.784 A A 2 3 -2.403 A A 12 11 2.893 -1.233 0.186 -0.443 AA_G2U3:A11C12_AA 2 2.743 -5.345 29.636 -0.633 0.148 1.578 43.105 A A 3 4 46.604 A A 11 10 3.374 30.926 -0.322 -1.200 AA_U3G4:C10A11_AA 3 -3.299 4.971 30.222 -4.395 0.144 3.024 39.044 A A 4 5 14.796 A A 10 9 2.857 9.725 1.735 -0.141 AA_G4C5:G9C10_AA 4 7.994 -12.162 37.034 -1.295 -1.705 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-04-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model The solution structure of the Stem Loop C 5'AUA3' triloop of Brome Mosaic Virus (+) strand RNA The solution structure of the mutant stem loop C 5'GUA3' triloop of Brome Mosaic Virus (+) strand RNA N RCSB Y RCSB 2001-02-20 REL REL This sequence is a mutant triloop of which wild type sequence is naturally occured in BMV (+) strand RNA sample 1 2D NOESY DQF-COSY 5mM NaCl 6.5 ambient 283 K simulated annealing 1 minimized average structure 2mM 5'UUA3' triloop, unlabeled, 5mM Sodium Phosphate buffer, pH 6.5 90% H2O/10% D2O data analysis Felix 95 Bruger, A. structure solution X-PLOR 3.1 Bruger, A. refinement X-PLOR 3.1 500 Bruker AVANCE 600 Bruker AMX G 1 n 1 G 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A U 6 n 6 U 6 A U 7 n 7 U 7 A A 8 n 8 A 8 A G 9 n 9 G 9 A C 10 n 10 C 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A C 13 n 13 C 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HO2' O4' A C 11 12 1.44 minimized average The solution structure of the major family of the mutant stem loop C 5'UUA3' triloop of brome mosaic virus (+) strand RNA 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 13 A N4 C 13 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 12 A N4 C 12 1_555 hydrog WATSON-CRICK A U 3 A N3 U 3 1_555 A A 11 A N1 A 11 1_555 hydrog WATSON-CRICK A U 3 A O4 U 3 1_555 A A 11 A N6 A 11 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 10 A N4 C 10 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 9 A N1 G 9 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 9 A O6 G 9 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 9 A N2 G 9 1_555 RNA RNA, Triloop, Stem-Loop, Mutant, Replication, BMV 1I4B PDB 1 1I4B 1 13 1I4B 1 13 1I4B A 1 1 13 1 P 1