1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tinoco Jr., I.
Kim, C.-H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
307
827
839
10.1006/jmbi.2001.4497
11273704
Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter
2001
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
415
423
10.1038/75202
RNA motifs that determine specificity between a viral Replicase and its promoter
2000
10.2210/pdb1i4b/pdb
pdb_00001i4b
incorrect carbon chiral center(s)
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
THE MAJOR STRUCTURAL FAMILY OF 5'UUA3' MUTANT TRILOOP
4133.501
5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3'
1
syn
polymer
no
no
GGUGCUUAGCACC
GGUGCUUAGCACC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-20.151
1
19
A
1
A
13
-4.573
A_G1:C13_A
1
-6.450
-0.209
-0.619
-0.238
-10.183
1
19
A
2
A
12
-3.532
A_G2:C12_A
2
-26.185
-0.124
-0.274
-0.246
9.243
1
20
A
3
A
11
-1.804
A_U3:A11_A
3
-26.895
-0.305
-0.789
-0.238
-3.058
1
19
A
4
A
10
0.036
A_G4:C10_A
4
-26.068
-0.164
-0.373
-0.286
-8.165
1
19
A
5
A
9
4.442
A_C5:G9_A
5
-5.941
0.359
-0.721
-0.427
3.138
34.591
A
A
1
2
-1.763
A
A
13
12
3.102
-1.048
-1.342
-0.991
AA_G1G2:C12C13_AA
1
-0.216
0.364
34.575
-1.513
2.225
2.913
29.784
A
A
2
3
-2.403
A
A
12
11
2.893
-1.233
0.186
-0.443
AA_G2U3:A11C12_AA
2
2.743
-5.345
29.636
-0.633
0.148
1.578
43.105
A
A
3
4
46.604
A
A
11
10
3.374
30.926
-0.322
-1.200
AA_U3G4:C10A11_AA
3
-3.299
4.971
30.222
-4.395
0.144
3.024
39.044
A
A
4
5
14.796
A
A
10
9
2.857
9.725
1.735
-0.141
AA_G4C5:G9C10_AA
4
7.994
-12.162
37.034
-1.295
-1.705
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-04-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
The solution structure of the Stem Loop C 5'AUA3' triloop of Brome Mosaic Virus (+) strand RNA
The solution structure of the mutant stem loop C 5'GUA3' triloop of Brome Mosaic Virus (+) strand RNA
N
RCSB
Y
RCSB
2001-02-20
REL
REL
This sequence is a mutant triloop of which wild type sequence is naturally occured in BMV (+) strand RNA
sample
1
2D NOESY
DQF-COSY
5mM NaCl
6.5
ambient
283
K
simulated annealing
1
minimized average structure
2mM 5'UUA3' triloop, unlabeled, 5mM Sodium Phosphate buffer, pH 6.5
90% H2O/10% D2O
data analysis
Felix
95
Bruger, A.
structure solution
X-PLOR
3.1
Bruger, A.
refinement
X-PLOR
3.1
500
Bruker
AVANCE
600
Bruker
AMX
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
C
5
n
5
C
5
A
U
6
n
6
U
6
A
U
7
n
7
U
7
A
A
8
n
8
A
8
A
G
9
n
9
G
9
A
C
10
n
10
C
10
A
A
11
n
11
A
11
A
C
12
n
12
C
12
A
C
13
n
13
C
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
HO2'
O4'
A
C
11
12
1.44
minimized average
The solution structure of the major family of the mutant stem loop C 5'UUA3' triloop of brome mosaic virus (+) strand RNA
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
13
A
N4
C
13
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
11
A
N1
A
11
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
11
A
N6
A
11
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
10
A
N4
C
10
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
A
G
9
A
N1
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
A
G
9
A
O6
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
A
G
9
A
N2
G
9
1_555
RNA
RNA, Triloop, Stem-Loop, Mutant, Replication, BMV
1I4B
PDB
1
1I4B
1
13
1I4B
1
13
1I4B
A
1
1
13
1
P 1