1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Tinoco Jr., I. Kim, C.-H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 307 827 839 10.1006/jmbi.2001.4497 11273704 Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter. 2001 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 7 415 423 10.1038/75202 RNA motifs that determine specificity between a viral replicase and its promoter 2000 10.2210/pdb1i4c/pdb pdb_00001i4c incorrect carbon chiral center(s) 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 THE MINOR STRUCTURAL FAMILY OF 5'UUA3' MUTANT TRILOOP. 4133.501 RNA (5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3') 1 syn polymer no no GGUGCUUAGCACC GGUGCUUAGCACC A polyribonucleotide n n n n n n n n n n n n n -20.727 1 19 A 1 A 13 -3.087 A_G1:C13_A 1 -9.417 -0.290 -0.669 -0.208 -9.624 1 19 A 2 A 12 -3.092 A_G2:C12_A 2 -23.274 -0.339 -0.307 -0.227 9.349 1 20 A 3 A 11 -5.288 A_U3:A11_A 3 -28.382 -0.219 -0.573 -0.282 -2.848 1 19 A 4 A 10 -1.705 A_G4:C10_A 4 -30.462 -0.178 -0.075 -0.279 -7.173 1 19 A 5 A 9 4.029 A_C5:G9_A 5 -14.007 0.255 -0.358 -0.335 2.902 34.372 A A 1 2 6.273 A A 13 12 2.963 3.699 -1.425 -0.899 AA_G1G2:C12C13_AA 1 -1.253 2.125 34.156 -2.041 2.235 2.922 30.049 A A 2 3 1.649 A A 12 11 2.941 0.855 -0.163 -0.411 AA_G2U3:A11C12_AA 2 0.997 -1.924 30.020 -0.950 0.498 1.432 44.597 A A 3 4 46.623 A A 11 10 3.322 31.965 -0.122 -1.341 AA_U3G4:C10A11_AA 3 -4.006 5.842 31.258 -4.327 -0.160 3.177 40.688 A A 4 5 1.818 A A 10 9 2.909 1.252 1.511 -0.201 AA_G4C5:G9C10_AA 4 10.059 -14.609 39.457 -0.420 -1.118 atom_site database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations 1 0 2001-04-21 1 1 2008-04-27 1 2 2011-07-13 2 0 2022-02-23 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model the solution structure of the wild type stem loop C 5'AUA3' triloop of Brome Mosaic Virus (+) RNA. the solution structure of the mutant stem loop C 5'GUA3' triloop of Brome Mosaic Virus (+) RNA the solution structure of the major family of the mutant stem loop C 5'UUA3' triloop of Brome Mosaic Virus (+) RNA RCSB Y RCSB 2001-02-20 REL REL This sequence is a mutant triloop of which wild type sequence is naturally occured in BMV (+) strand RNA sample 1 2D NOESY DQF-COSY 5mM NaCl 6.5 ambient 283 K simulated annealing 1 minimized average structure 2mM 5'UUA3' triloop, unlabeled, 5mM Sodium Phosphate buffer pH 6.5 90% H2O/10% D2O data analysis Felix 95 Brunger, A. structure solution X-PLOR 3.1 Brunger, A. refinement X-PLOR 3.1 500 Bruker AVANCE 600 Bruker AMX G 1 n 1 G 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A U 6 n 6 U 6 A U 7 n 7 U 7 A A 8 n 8 A 8 A G 9 n 9 G 9 A C 10 n 10 C 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A C 13 n 13 C 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A C4' G 1 WRONG HAND 1 A C3' G 1 WRONG HAND 1 A C2' G 1 WRONG HAND 1 A C1' G 1 WRONG HAND 1 A C3' C 13 WRONG HAND 1 A A HO2' O4' A C 11 12 1.52 1 A A HO2' OP1 G C 9 10 1.59 1 A G 1 1.088 SIDE CHAIN 1 -8.33 0.80 109.40 101.07 A A A O5' C5' C4' G G G 1 1 1 N 1 -32.87 1.40 115.20 82.33 A A A C5' C4' C3' G G G 1 1 1 N 1 -13.45 2.10 109.40 95.95 A A A C4' C3' O3' G G G 1 1 1 N 1 -21.01 0.70 101.30 80.29 A A A C3' C2' C1' G G G 1 1 1 N 1 -104.99 1.10 112.00 7.01 A A A N9 C1' C2' G G G 1 1 1 N 1 -103.74 3.00 110.60 6.86 A A A C1' C2' O2' G G G 1 1 1 N 1 -32.55 2.90 113.30 80.75 A A A C3' C2' O2' G G G 1 1 1 N 1 -54.42 1.30 127.00 72.58 A A A C8 N9 C1' G G G 1 1 1 N 1 -51.86 1.30 126.50 74.64 A A A C4 N9 C1' G G G 1 1 1 N 1 -60.36 2.20 105.20 44.84 A A A O3' P OP2 G C C 9 10 10 Y 1 -34.38 1.50 119.60 85.22 A A A OP1 P OP2 C C C 10 10 10 N 1 -31.58 0.90 105.70 74.12 A A A O5' P OP2 C C C 10 10 10 N 1 -82.81 2.10 109.40 26.59 A A A C4' C3' O3' C C C 13 13 13 N 1 -21.64 2.20 109.50 87.86 A A A C2' C3' O3' C C C 13 13 13 N 1 -98.46 3.00 110.60 12.14 A A A C1' C2' O2' C C C 13 13 13 N 1 -18.40 2.90 113.30 94.90 A A A C3' C2' O2' C C C 13 13 13 N 1 A A O5' C5' G G 1 1 18.176 0.016 1.440 19.616 N 1 A A C4' C3' G G 1 1 18.609 0.011 1.527 20.136 N 1 A A C2' C1' G G 1 1 18.823 0.011 1.529 20.352 N 1 A A C1' N9 G G 1 1 18.934 0.015 1.483 20.417 N 1 A A C2' O2' G G 1 1 18.854 0.010 1.420 20.274 N 1 A A P OP2 C C 10 10 18.088 0.017 1.485 19.573 N 1 A A O3' C3' C C 13 13 19.005 0.012 1.427 20.432 N 1 A A C2' O2' C C 13 13 18.253 0.010 1.420 19.673 N minimized average THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 13 A N4 C 13 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 12 A N4 C 12 1_555 hydrog WATSON-CRICK A U 3 A N3 U 3 1_555 A A 11 A N1 A 11 1_555 hydrog WATSON-CRICK A U 3 A O4 U 3 1_555 A A 11 A N6 A 11 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 10 A N4 C 10 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 9 A N1 G 9 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 9 A O6 G 9 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 9 A N2 G 9 1_555 RNA RNA, Stem-loop, Triloop, replication, BMV, Virus 1I4C PDB 1 1I4C 1 13 1I4C 1 13 1I4C A 1 1 13 1 P 1