1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tinoco Jr., I.
Kim, C.-H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
307
827
839
10.1006/jmbi.2001.4497
11273704
Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter.
2001
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
415
423
10.1038/75202
RNA motifs that determine specificity between a viral replicase and its promoter
2000
10.2210/pdb1i4c/pdb
pdb_00001i4c
incorrect carbon chiral center(s)
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
THE MINOR STRUCTURAL FAMILY OF 5'UUA3' MUTANT TRILOOP.
4133.501
RNA (5'-R(*GP*GP*UP*GP*CP*UP*UP*AP*GP*CP*AP*CP*C)-3')
1
syn
polymer
no
no
GGUGCUUAGCACC
GGUGCUUAGCACC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-20.727
1
19
A
1
A
13
-3.087
A_G1:C13_A
1
-9.417
-0.290
-0.669
-0.208
-9.624
1
19
A
2
A
12
-3.092
A_G2:C12_A
2
-23.274
-0.339
-0.307
-0.227
9.349
1
20
A
3
A
11
-5.288
A_U3:A11_A
3
-28.382
-0.219
-0.573
-0.282
-2.848
1
19
A
4
A
10
-1.705
A_G4:C10_A
4
-30.462
-0.178
-0.075
-0.279
-7.173
1
19
A
5
A
9
4.029
A_C5:G9_A
5
-14.007
0.255
-0.358
-0.335
2.902
34.372
A
A
1
2
6.273
A
A
13
12
2.963
3.699
-1.425
-0.899
AA_G1G2:C12C13_AA
1
-1.253
2.125
34.156
-2.041
2.235
2.922
30.049
A
A
2
3
1.649
A
A
12
11
2.941
0.855
-0.163
-0.411
AA_G2U3:A11C12_AA
2
0.997
-1.924
30.020
-0.950
0.498
1.432
44.597
A
A
3
4
46.623
A
A
11
10
3.322
31.965
-0.122
-1.341
AA_U3G4:C10A11_AA
3
-4.006
5.842
31.258
-4.327
-0.160
3.177
40.688
A
A
4
5
1.818
A
A
10
9
2.909
1.252
1.511
-0.201
AA_G4C5:G9C10_AA
4
10.059
-14.609
39.457
-0.420
-1.118
atom_site
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
1
0
2001-04-21
1
1
2008-04-27
1
2
2011-07-13
2
0
2022-02-23
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
the solution structure of the wild type stem loop C 5'AUA3' triloop of Brome Mosaic Virus (+) RNA.
the solution structure of the mutant stem loop C 5'GUA3' triloop of Brome Mosaic Virus (+) RNA
the solution structure of the major family of the mutant stem loop C 5'UUA3' triloop of Brome Mosaic Virus (+) RNA
RCSB
Y
RCSB
2001-02-20
REL
REL
This sequence is a mutant triloop of which wild type sequence is naturally occured in BMV (+) strand RNA
sample
1
2D NOESY
DQF-COSY
5mM NaCl
6.5
ambient
283
K
simulated annealing
1
minimized average structure
2mM 5'UUA3' triloop, unlabeled, 5mM Sodium Phosphate buffer pH 6.5
90% H2O/10% D2O
data analysis
Felix
95
Brunger, A.
structure solution
X-PLOR
3.1
Brunger, A.
refinement
X-PLOR
3.1
500
Bruker
AVANCE
600
Bruker
AMX
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
C
5
n
5
C
5
A
U
6
n
6
U
6
A
U
7
n
7
U
7
A
A
8
n
8
A
8
A
G
9
n
9
G
9
A
C
10
n
10
C
10
A
A
11
n
11
A
11
A
C
12
n
12
C
12
A
C
13
n
13
C
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C4'
G
1
WRONG HAND
1
A
C3'
G
1
WRONG HAND
1
A
C2'
G
1
WRONG HAND
1
A
C1'
G
1
WRONG HAND
1
A
C3'
C
13
WRONG HAND
1
A
A
HO2'
O4'
A
C
11
12
1.52
1
A
A
HO2'
OP1
G
C
9
10
1.59
1
A
G
1
1.088
SIDE CHAIN
1
-8.33
0.80
109.40
101.07
A
A
A
O5'
C5'
C4'
G
G
G
1
1
1
N
1
-32.87
1.40
115.20
82.33
A
A
A
C5'
C4'
C3'
G
G
G
1
1
1
N
1
-13.45
2.10
109.40
95.95
A
A
A
C4'
C3'
O3'
G
G
G
1
1
1
N
1
-21.01
0.70
101.30
80.29
A
A
A
C3'
C2'
C1'
G
G
G
1
1
1
N
1
-104.99
1.10
112.00
7.01
A
A
A
N9
C1'
C2'
G
G
G
1
1
1
N
1
-103.74
3.00
110.60
6.86
A
A
A
C1'
C2'
O2'
G
G
G
1
1
1
N
1
-32.55
2.90
113.30
80.75
A
A
A
C3'
C2'
O2'
G
G
G
1
1
1
N
1
-54.42
1.30
127.00
72.58
A
A
A
C8
N9
C1'
G
G
G
1
1
1
N
1
-51.86
1.30
126.50
74.64
A
A
A
C4
N9
C1'
G
G
G
1
1
1
N
1
-60.36
2.20
105.20
44.84
A
A
A
O3'
P
OP2
G
C
C
9
10
10
Y
1
-34.38
1.50
119.60
85.22
A
A
A
OP1
P
OP2
C
C
C
10
10
10
N
1
-31.58
0.90
105.70
74.12
A
A
A
O5'
P
OP2
C
C
C
10
10
10
N
1
-82.81
2.10
109.40
26.59
A
A
A
C4'
C3'
O3'
C
C
C
13
13
13
N
1
-21.64
2.20
109.50
87.86
A
A
A
C2'
C3'
O3'
C
C
C
13
13
13
N
1
-98.46
3.00
110.60
12.14
A
A
A
C1'
C2'
O2'
C
C
C
13
13
13
N
1
-18.40
2.90
113.30
94.90
A
A
A
C3'
C2'
O2'
C
C
C
13
13
13
N
1
A
A
O5'
C5'
G
G
1
1
18.176
0.016
1.440
19.616
N
1
A
A
C4'
C3'
G
G
1
1
18.609
0.011
1.527
20.136
N
1
A
A
C2'
C1'
G
G
1
1
18.823
0.011
1.529
20.352
N
1
A
A
C1'
N9
G
G
1
1
18.934
0.015
1.483
20.417
N
1
A
A
C2'
O2'
G
G
1
1
18.854
0.010
1.420
20.274
N
1
A
A
P
OP2
C
C
10
10
18.088
0.017
1.485
19.573
N
1
A
A
O3'
C3'
C
C
13
13
19.005
0.012
1.427
20.432
N
1
A
A
C2'
O2'
C
C
13
13
18.253
0.010
1.420
19.673
N
minimized average
THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
13
A
N4
C
13
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
11
A
N1
A
11
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
11
A
N6
A
11
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
10
A
N4
C
10
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
A
G
9
A
N1
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
A
G
9
A
O6
G
9
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
A
G
9
A
N2
G
9
1_555
RNA
RNA, Stem-loop, Triloop, replication, BMV, Virus
1I4C
PDB
1
1I4C
1
13
1I4C
1
13
1I4C
A
1
1
13
1
P 1