0.011704 0.000000 0.000000 0.000000 0.011668 0.000000 0.000000 0.000000 0.024691 0.00000 0.00000 0.00000 Knaus, K.J. Morillas, M. Swietnicki, W. Malone, M. Surewicz, W.K. Yee, V.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 85.441 85.707 40.501 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 8 770 774 10.1038/nsb0901-770 11524679 Crystal structure of the human prion protein reveals a mechanism for oligomerization. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-09-24 CUSTOM-MADE SINGLE WAVELENGTH M x-ray 1 1.0688 1.0 19-ID APS 1.0688 SYNCHROTRON APS BEAMLINE 19-ID 12715.145 MAJOR PRION PROTEIN FRAGMENT 119-226 1 man polymer 112.411 CADMIUM ION 2 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 113 nat water PRP no no GAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENF TETDVKMMERVVEQMCITQYERESQAYY GAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENF TETDVKMMERVVEQMCITQYERESQAYY A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 2.91 57.80 VAPOR DIFFUSION, SITTING DROP 8 SODIUM CHLORIDE, TRIS HYDROCHLORIDE, CADMIUM CHLORIDE, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 repository Initial release Version format compliance Derived calculations Version format compliance 1 0 2002-02-27 1 1 2008-04-27 1 2 2011-07-13 RCSB Y RCSB 2001-02-22 REL REL CD CADMIUM ION CL CHLORIDE ION HOH water CD 300 2 CD CD 300 A CD 301 2 CD CD 301 A CL 1 3 CL CL 1 A HOH 2 4 HOH HOH 2 A HOH 3 4 HOH HOH 3 A HOH 4 4 HOH HOH 4 A HOH 5 4 HOH HOH 5 A HOH 6 4 HOH HOH 6 A HOH 7 4 HOH HOH 7 A HOH 8 4 HOH HOH 8 A HOH 9 4 HOH HOH 9 A HOH 10 4 HOH HOH 10 A HOH 11 4 HOH HOH 11 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 14 4 HOH HOH 14 A HOH 15 4 HOH HOH 15 A HOH 16 4 HOH HOH 16 A HOH 17 4 HOH HOH 17 A HOH 18 4 HOH HOH 18 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 21 4 HOH HOH 21 A HOH 22 4 HOH HOH 22 A HOH 23 4 HOH HOH 23 A HOH 24 4 HOH HOH 24 A HOH 25 4 HOH HOH 25 A HOH 26 4 HOH HOH 26 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 32 4 HOH HOH 32 A HOH 33 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 35 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 37 4 HOH HOH 37 A HOH 38 4 HOH HOH 38 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 43 4 HOH HOH 43 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 47 4 HOH HOH 47 A HOH 48 4 HOH HOH 48 A HOH 49 4 HOH HOH 49 A HOH 50 4 HOH HOH 50 A HOH 51 4 HOH HOH 51 A HOH 52 4 HOH HOH 52 A HOH 53 4 HOH HOH 53 A HOH 54 4 HOH HOH 54 A HOH 55 4 HOH HOH 55 A HOH 56 4 HOH HOH 56 A HOH 57 4 HOH HOH 57 A HOH 58 4 HOH HOH 58 A HOH 59 4 HOH HOH 59 A HOH 60 4 HOH HOH 60 A HOH 61 4 HOH HOH 61 A HOH 62 4 HOH HOH 62 A HOH 63 4 HOH HOH 63 A HOH 64 4 HOH HOH 64 A HOH 65 4 HOH HOH 65 A HOH 66 4 HOH HOH 66 A HOH 67 4 HOH HOH 67 A HOH 68 4 HOH HOH 68 A HOH 69 4 HOH HOH 69 A HOH 70 4 HOH HOH 70 A HOH 71 4 HOH HOH 71 A HOH 72 4 HOH HOH 72 A HOH 73 4 HOH HOH 73 A HOH 74 4 HOH HOH 74 A HOH 75 4 HOH HOH 75 A HOH 76 4 HOH HOH 76 A HOH 77 4 HOH HOH 77 A HOH 78 4 HOH HOH 78 A HOH 79 4 HOH HOH 79 A HOH 80 4 HOH HOH 80 A HOH 81 4 HOH HOH 81 A HOH 82 4 HOH HOH 82 A HOH 83 4 HOH HOH 83 A HOH 84 4 HOH HOH 84 A HOH 85 4 HOH HOH 85 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A HOH 88 4 HOH HOH 88 A HOH 89 4 HOH HOH 89 A HOH 90 4 HOH HOH 90 A HOH 91 4 HOH HOH 91 A HOH 92 4 HOH HOH 92 A HOH 93 4 HOH HOH 93 A HOH 94 4 HOH HOH 94 A HOH 95 4 HOH HOH 95 A HOH 96 4 HOH HOH 96 A HOH 97 4 HOH HOH 97 A HOH 98 4 HOH HOH 98 A HOH 99 4 HOH HOH 99 A HOH 100 4 HOH HOH 100 A HOH 101 4 HOH HOH 101 A HOH 102 4 HOH HOH 102 A HOH 103 4 HOH HOH 103 A HOH 104 4 HOH HOH 104 A HOH 105 4 HOH HOH 105 A HOH 106 4 HOH HOH 106 A HOH 107 4 HOH HOH 107 A HOH 108 4 HOH HOH 108 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 112 4 HOH HOH 112 A HOH 113 4 HOH HOH 113 A HOH 114 4 HOH HOH 114 A GLY 119 n 1 GLY 119 A ALA 120 n 2 ALA 120 A VAL 121 n 3 VAL 121 A VAL 122 n 4 VAL 122 A GLY 123 n 5 GLY 123 A GLY 124 n 6 GLY 124 A LEU 125 n 7 LEU 125 A GLY 126 n 8 GLY 126 A GLY 127 n 9 GLY 127 A TYR 128 n 10 TYR 128 A MET 129 n 11 MET 129 A LEU 130 n 12 LEU 130 A GLY 131 n 13 GLY 131 A SER 132 n 14 SER 132 A ALA 133 n 15 ALA 133 A MET 134 n 16 MET 134 A SER 135 n 17 SER 135 A ARG 136 n 18 ARG 136 A PRO 137 n 19 PRO 137 A ILE 138 n 20 ILE 138 A ILE 139 n 21 ILE 139 A HIS 140 n 22 HIS 140 A PHE 141 n 23 PHE 141 A GLY 142 n 24 GLY 142 A SER 143 n 25 SER 143 A ASP 144 n 26 ASP 144 A TYR 145 n 27 TYR 145 A GLU 146 n 28 GLU 146 A ASP 147 n 29 ASP 147 A ARG 148 n 30 ARG 148 A TYR 149 n 31 TYR 149 A TYR 150 n 32 TYR 150 A ARG 151 n 33 ARG 151 A GLU 152 n 34 GLU 152 A ASN 153 n 35 ASN 153 A MET 154 n 36 MET 154 A HIS 155 n 37 HIS 155 A ARG 156 n 38 ARG 156 A TYR 157 n 39 TYR 157 A PRO 158 n 40 PRO 158 A ASN 159 n 41 ASN 159 A GLN 160 n 42 GLN 160 A VAL 161 n 43 VAL 161 A TYR 162 n 44 TYR 162 A TYR 163 n 45 TYR 163 A ARG 164 n 46 ARG 164 A PRO 165 n 47 PRO 165 A MET 166 n 48 MET 166 A ASP 167 n 49 ASP 167 A GLU 168 n 50 GLU 168 A TYR 169 n 51 TYR 169 A SER 170 n 52 SER 170 A ASN 171 n 53 ASN 171 A GLN 172 n 54 GLN 172 A ASN 173 n 55 ASN 173 A ASN 174 n 56 ASN 174 A PHE 175 n 57 PHE 175 A VAL 176 n 58 VAL 176 A HIS 177 n 59 HIS 177 A ASP 178 n 60 ASP 178 A CYS 179 n 61 CYS 179 A VAL 180 n 62 VAL 180 A ASN 181 n 63 ASN 181 A ILE 182 n 64 ILE 182 A THR 183 n 65 THR 183 A ILE 184 n 66 ILE 184 A LYS 185 n 67 LYS 185 A GLN 186 n 68 GLN 186 A HIS 187 n 69 HIS 187 A THR 188 n 70 THR 188 A VAL 189 n 71 VAL 189 A THR 190 n 72 THR 190 A THR 191 n 73 THR 191 A THR 192 n 74 THR 192 A THR 193 n 75 THR 193 A LYS 194 n 76 LYS 194 A GLY 195 n 77 GLY 195 A GLU 196 n 78 GLU 196 A ASN 197 n 79 ASN 197 A PHE 198 n 80 PHE 198 A THR 199 n 81 THR 199 A GLU 200 n 82 GLU 200 A THR 201 n 83 THR 201 A ASP 202 n 84 ASP 202 A VAL 203 n 85 VAL 203 A LYS 204 n 86 LYS 204 A MET 205 n 87 MET 205 A MET 206 n 88 MET 206 A GLU 207 n 89 GLU 207 A ARG 208 n 90 ARG 208 A VAL 209 n 91 VAL 209 A VAL 210 n 92 VAL 210 A GLU 211 n 93 GLU 211 A GLN 212 n 94 GLN 212 A MET 213 n 95 MET 213 A CYS 214 n 96 CYS 214 A ILE 215 n 97 ILE 215 A THR 216 n 98 THR 216 A GLN 217 n 99 GLN 217 A TYR 218 n 100 TYR 218 A GLU 219 n 101 GLU 219 A ARG 220 n 102 ARG 220 A GLU 221 n 103 GLU 221 A SER 222 n 104 SER 222 A GLN 223 n 105 GLN 223 A ALA 224 n 106 ALA 224 A TYR 225 n 107 TYR 225 A TYR 226 n 108 TYR 226 A author_and_software_defined_assembly PISA,PQS 2 dimeric 6800 -89 11690 A ASP 147 A OD1 ASP 29 1_555 A CD 300 B CD CD 1_555 A HIS 140 A ND1 HIS 22 1_555 150.4 A ASP 147 A OD1 ASP 29 1_555 A CD 300 B CD CD 1_555 A ASP 147 A OD2 ASP 29 1_555 53.1 A HIS 140 A ND1 HIS 22 1_555 A CD 300 B CD CD 1_555 A ASP 147 A OD2 ASP 29 1_555 103.8 A ASP 147 A OD1 ASP 29 1_555 A CD 300 B CD CD 1_555 A HOH 3 E O HOH 1_555 96.1 A HIS 140 A ND1 HIS 22 1_555 A CD 300 B CD CD 1_555 A HOH 3 E O HOH 1_555 105.8 A ASP 147 A OD2 ASP 29 1_555 A CD 300 B CD CD 1_555 A HOH 3 E O HOH 1_555 149.2 A ASP 147 A OD1 ASP 29 1_555 A CD 300 B CD CD 1_555 A HOH 4 E O HOH 1_555 109.8 A HIS 140 A ND1 HIS 22 1_555 A CD 300 B CD CD 1_555 A HOH 4 E O HOH 1_555 70.3 A ASP 147 A OD2 ASP 29 1_555 A CD 300 B CD CD 1_555 A HOH 4 E O HOH 1_555 132.7 A HOH 3 E O HOH 1_555 A CD 300 B CD CD 1_555 A HOH 4 E O HOH 1_555 53.4 A ASP 147 A OD1 ASP 29 1_555 A CD 300 B CD CD 1_555 A HOH 2 E O HOH 1_555 99.5 A HIS 140 A ND1 HIS 22 1_555 A CD 300 B CD CD 1_555 A HOH 2 E O HOH 1_555 94.6 A ASP 147 A OD2 ASP 29 1_555 A CD 300 B CD CD 1_555 A HOH 2 E O HOH 1_555 82.6 A HOH 3 E O HOH 1_555 A CD 300 B CD CD 1_555 A HOH 2 E O HOH 1_555 103.2 A HOH 4 E O HOH 1_555 A CD 300 B CD CD 1_555 A HOH 2 E O HOH 1_555 143.3 A HOH 9 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 6 E O HOH 1_555 83.5 A HOH 9 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 7 E O HOH 1_555 165.2 A HOH 6 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 7 E O HOH 1_555 110.4 A HOH 9 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 8 E O HOH 1_555 79.3 A HOH 6 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 8 E O HOH 1_555 103.6 A HOH 7 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 8 E O HOH 1_555 92.3 A HOH 9 E O HOH 1_555 A CD 301 C CD CD 1_555 A HIS 177 A ND1 HIS 59 1_555 98.1 A HOH 6 E O HOH 1_555 A CD 301 C CD CD 1_555 A HIS 177 A ND1 HIS 59 1_555 105.7 A HOH 7 E O HOH 1_555 A CD 301 C CD CD 1_555 A HIS 177 A ND1 HIS 59 1_555 83.1 A HOH 8 E O HOH 1_555 A CD 301 C CD CD 1_555 A HIS 177 A ND1 HIS 59 1_555 150.1 A HOH 9 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 5 E O HOH 6_555 90.9 A HOH 6 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 5 E O HOH 6_555 168.9 A HOH 7 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 5 E O HOH 6_555 74.5 A HOH 8 E O HOH 1_555 A CD 301 C CD CD 1_555 A HOH 5 E O HOH 6_555 65.8 A HIS 177 A ND1 HIS 59 1_555 A CD 301 C CD CD 1_555 A HOH 5 E O HOH 6_555 84.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 x,-y,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 40.5010000000 A N MET 129 A N MET 11 A O TYR 163 A O TYR 45 1 A HOH 37 E HOH 1 A A O O HOH HOH 3 4 2.19 1 -20.36 1.80 114.00 93.64 A A A CA CB SG CYS CYS CYS 214 214 214 N 1 A TYR 225 -35.21 157.45 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 39.8 17.28 0.00 0.00 -4.71 0.00 -12.57 0.2530000 0.009 0.2060000 0.2250000 0.2060000 2.00 27.10 728 10412 10069 7.2 96.6 RANDOM 1594254.19 0.00 1 RESTRAINED THROUGHOUT 0.0 0.0 MIR Engh & Huber FLAT MODEL 61.37 0.388 0.33 0.25 30.00 0.28 0.23 2.00 27.10 113 1005 3 0 889 0.009 1.4 19.6 0.79 0.3186000 0.2537000 2.05 37 1372 571 6 6.8 26 2.0 30 1I4M 10079 10069 0.0 0.0 0.0480000 1 36 7.8 96.7 0.2390000 2.0 2.07 1 6 84.8 phasing MLPHARE refinement CNS 1.0 data reduction DENZO data scaling SCALEPACK MAJOR PRION PROTEIN Crystal structure of the human prion protein reveals a mechanism for oligomerization 1 N N 2 N N 2 N N 3 N N 4 N N The second half of the dimer is generated by the two fold axis: x, -y, -z+1 A SER 143 A SER 25 HELX_P A MET 154 A MET 36 1 1 12 A HIS 155 A HIS 37 HELX_P A TYR 157 A TYR 39 5 2 3 A PRO 165 A PRO 47 HELX_P A TYR 169 A TYR 51 5 3 5 A ASN 171 A ASN 53 HELX_P A THR 190 A THR 72 1 4 20 A THR 193 A THR 75 HELX_P A PHE 198 A PHE 80 1 5 6 A THR 199 A THR 81 HELX_P A ALA 224 A ALA 106 1 6 26 disulf 2.249 A CYS 179 A SG CYS 61 1_555 A CYS 214 A SG CYS 96 4_556 metalc 2.598 A CD 300 B CD CD 1_555 A ASP 147 A OD1 ASP 29 1_555 metalc 2.473 A CD 300 B CD CD 1_555 A HIS 140 A ND1 HIS 22 1_555 metalc 2.297 A CD 300 B CD CD 1_555 A ASP 147 A OD2 ASP 29 1_555 metalc 2.734 A CD 300 B CD CD 1_555 A HOH 3 E O HOH 1_555 metalc 1.612 A CD 300 B CD CD 1_555 A HOH 4 E O HOH 1_555 metalc 2.635 A CD 300 B CD CD 1_555 A HOH 2 E O HOH 1_555 metalc 2.869 A CD 301 C CD CD 1_555 A HOH 9 E O HOH 1_555 metalc 2.953 A CD 301 C CD CD 1_555 A HOH 6 E O HOH 1_555 metalc 2.819 A CD 301 C CD CD 1_555 A HOH 7 E O HOH 1_555 metalc 2.968 A CD 301 C CD CD 1_555 A HOH 8 E O HOH 1_555 metalc 2.261 A CD 301 C CD CD 1_555 A HIS 177 A ND1 HIS 59 1_555 metalc 2.990 A CD 301 C CD CD 1_555 A HOH 5 E O HOH 6_555 MEMBRANE PROTEIN DOMAIN-SWAPPED DIMER, MEMBRANE PROTEIN PRIO_HUMAN UNP 1 1 P04156 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG WGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQ VYYRPMDEYSNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV ILLISFLIFLIVG 119 226 1I4M 119 226 P04156 A 1 1 108 2 anti-parallel A MET 129 A MET 11 A LEU 130 A LEU 12 A TYR 162 A TYR 44 A TYR 163 A TYR 45 BINDING SITE FOR RESIDUE CD A 300 Software 5 BINDING SITE FOR RESIDUE CD A 301 Software 6 BINDING SITE FOR RESIDUE CL A 1 Software 3 A HOH 2 E HOH 5 1_555 A HOH 3 E HOH 5 1_555 A HOH 4 E HOH 5 1_555 A HIS 140 A HIS 22 5 1_555 A ASP 147 A ASP 29 5 1_555 A HOH 5 E HOH 6 6_555 A HOH 6 E HOH 6 1_555 A HOH 7 E HOH 6 1_555 A HOH 8 E HOH 6 1_555 A HOH 9 E HOH 6 1_555 A HIS 177 A HIS 59 6 1_555 A SER 132 A SER 14 3 1_555 A LYS 185 A LYS 67 3 6_554 A GLN 217 A GLN 99 3 4_556 20 C 2 2 21