1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Yao, Y. Qian, C. Ye, K. Wang, J. Tang, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C N -1 26.017 CYANIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 7 539 547 10.1007/s00775-001-0334-y 11941512 Solution structure of cyanoferricytochrome c: ligand-controlled conformational flexibility and electronic structure of the heme moiety. 2002 10.2210/pdb1i5t/pdb pdb_00001i5t 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 11725.598 CYTOCHROME C 1 nat polymer 26.017 CYANIDE ION 1 syn non-polymer 618.503 HEME C 1 syn non-polymer no no GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKM IFAGIKKKTEREDLIAYLKKATNE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n horse Equus sample 9796 Equus caballus HEART database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-03-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1AKK contains solution structure of the native oxidized horse heart cytochrome c 1I5U contains SOLUTION STRUCTURE OF CYTOCHROME B5 TRIPLE MUTANT (E48A/E56A/D60A) RCSB Y PDBJ 2001-02-28 REL REL CYN CYANIDE ION HEC HEME C all calculated structures submitted 35 1 7.0 303 K torsion angle dynamics minimized average structure 5mM cytochrome c,50mM potassium cyanide 90% H2O/10% D2O 5mM cytochrome c, 50mM potassium cyanide D2O processing XwinNMR 2.6 structure solution DYANA 1.5 refinement Amber 5.0 600 Bruker DMX 500 Bruker DRX CYA 105 2 CYN CYN 105 A HIS 18 3 HEC HEC 110 A GLY 1 n 1 GLY 1 A ASP 2 n 2 ASP 2 A VAL 3 n 3 VAL 3 A GLU 4 n 4 GLU 4 A LYS 5 n 5 LYS 5 A GLY 6 n 6 GLY 6 A LYS 7 n 7 LYS 7 A LYS 8 n 8 LYS 8 A ILE 9 n 9 ILE 9 A PHE 10 n 10 PHE 10 A VAL 11 n 11 VAL 11 A GLN 12 n 12 GLN 12 A LYS 13 n 13 LYS 13 A CYS 14 n 14 CYS 14 A ALA 15 n 15 ALA 15 A GLN 16 n 16 GLN 16 A CYS 17 n 17 CYS 17 A HIS 18 n 18 HIS 18 A THR 19 n 19 THR 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A LYS 22 n 22 LYS 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A LYS 25 n 25 LYS 25 A HIS 26 n 26 HIS 26 A LYS 27 n 27 LYS 27 A THR 28 n 28 THR 28 A GLY 29 n 29 GLY 29 A PRO 30 n 30 PRO 30 A ASN 31 n 31 ASN 31 A LEU 32 n 32 LEU 32 A HIS 33 n 33 HIS 33 A GLY 34 n 34 GLY 34 A LEU 35 n 35 LEU 35 A PHE 36 n 36 PHE 36 A GLY 37 n 37 GLY 37 A ARG 38 n 38 ARG 38 A LYS 39 n 39 LYS 39 A THR 40 n 40 THR 40 A GLY 41 n 41 GLY 41 A GLN 42 n 42 GLN 42 A ALA 43 n 43 ALA 43 A PRO 44 n 44 PRO 44 A GLY 45 n 45 GLY 45 A PHE 46 n 46 PHE 46 A THR 47 n 47 THR 47 A TYR 48 n 48 TYR 48 A THR 49 n 49 THR 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A ASN 52 n 52 ASN 52 A LYS 53 n 53 LYS 53 A ASN 54 n 54 ASN 54 A LYS 55 n 55 LYS 55 A GLY 56 n 56 GLY 56 A ILE 57 n 57 ILE 57 A THR 58 n 58 THR 58 A TRP 59 n 59 TRP 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A GLU 62 n 62 GLU 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A MET 65 n 65 MET 65 A GLU 66 n 66 GLU 66 A TYR 67 n 67 TYR 67 A LEU 68 n 68 LEU 68 A GLU 69 n 69 GLU 69 A ASN 70 n 70 ASN 70 A PRO 71 n 71 PRO 71 A LYS 72 n 72 LYS 72 A LYS 73 n 73 LYS 73 A TYR 74 n 74 TYR 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A GLY 77 n 77 GLY 77 A THR 78 n 78 THR 78 A LYS 79 n 79 LYS 79 A MET 80 n 80 MET 80 A ILE 81 n 81 ILE 81 A PHE 82 n 82 PHE 82 A ALA 83 n 83 ALA 83 A GLY 84 n 84 GLY 84 A ILE 85 n 85 ILE 85 A LYS 86 n 86 LYS 86 A LYS 87 n 87 LYS 87 A LYS 88 n 88 LYS 88 A THR 89 n 89 THR 89 A GLU 90 n 90 GLU 90 A ARG 91 n 91 ARG 91 A GLU 92 n 92 GLU 92 A ASP 93 n 93 ASP 93 A LEU 94 n 94 LEU 94 A ILE 95 n 95 ILE 95 A ALA 96 n 96 ALA 96 A TYR 97 n 97 TYR 97 A LEU 98 n 98 LEU 98 A LYS 99 n 99 LYS 99 A LYS 100 n 100 LYS 100 A ALA 101 n 101 ALA 101 A THR 102 n 102 THR 102 A ASN 103 n 103 ASN 103 A GLU 104 n 104 GLU 104 A author_defined_assembly 1 monomeric A HIS 18 A NE2 HIS 18 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C NA HEC 1_555 95.8 A HIS 18 A NE2 HIS 18 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C NB HEC 1_555 93.0 A HEC 110 C NA HEC 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C NB HEC 1_555 91.1 A HIS 18 A NE2 HIS 18 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C NC HEC 1_555 89.9 A HEC 110 C NA HEC 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C NC HEC 1_555 173.6 A HEC 110 C NB HEC 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C NC HEC 1_555 91.4 A HIS 18 A NE2 HIS 18 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C ND HEC 1_555 91.0 A HEC 110 C NA HEC 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C ND HEC 1_555 88.5 A HEC 110 C NB HEC 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C ND HEC 1_555 176.0 A HEC 110 C NC HEC 1_555 A HEC 110 C FE HEC 1_555 A HEC 110 C ND HEC 1_555 88.6 A HIS 18 A NE2 HIS 18 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B C CYN 1_555 176.8 A HEC 110 C NA HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B C CYN 1_555 87.0 A HEC 110 C NB HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B C CYN 1_555 85.3 A HEC 110 C NC HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B C CYN 1_555 87.4 A HEC 110 C ND HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B C CYN 1_555 90.7 A HIS 18 A NE2 HIS 18 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B N CYN 1_555 175.6 A HEC 110 C NA HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B N CYN 1_555 87.7 A HEC 110 C NB HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B N CYN 1_555 84.4 A HEC 110 C NC HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B N CYN 1_555 86.7 A HEC 110 C ND HEC 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B N CYN 1_555 91.6 A CYN 105 B C CYN 1_555 A HEC 110 C FE HEC 1_555 A CYN 105 B N CYN 1_555 1.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A THR LYS 78 79 149.32 1 A HIS 18 0.085 SIDE CHAIN 1 A TYR 48 0.078 SIDE CHAIN 1 A TYR 67 0.075 SIDE CHAIN 1 A TYR 74 0.079 SIDE CHAIN 1 A ARG 91 0.145 SIDE CHAIN 1 A LYS 13 -142.57 28.02 1 A CYS 14 -133.92 -49.80 1 A LYS 27 -107.21 -146.19 1 A HIS 33 13.86 84.69 1 A LYS 60 -126.02 -94.55 1 A GLU 61 -147.76 -52.94 1 A MET 80 -66.37 -84.25 1 A ILE 81 -150.11 -50.09 minimized average SOLUTION STRUCTURE OF CYANOFERRICYTOCHROME C 1 N N 2 N N 3 N N A ASP 2 A ASP 2 HELX_P A CYS 14 A CYS 14 1 1 13 A THR 49 A THR 49 HELX_P A GLY 56 A GLY 56 1 2 8 A GLU 61 A GLU 61 HELX_P A LEU 68 A LEU 68 1 3 8 A ASN 70 A ASN 70 HELX_P A ILE 75 A ILE 75 1 4 6 A LYS 87 A LYS 87 HELX_P A GLU 104 A GLU 104 1 5 18 covale 1.841 none A CYS 14 A SG CYS 14 1_555 A HEC 110 C CAB HEC 1_555 covale 1.833 none A CYS 17 A SG CYS 17 1_555 A HEC 110 C CAC HEC 1_555 metalc 1.958 A HIS 18 A NE2 HIS 18 1_555 A HEC 110 C FE HEC 1_555 metalc 1.837 A CYN 105 B C CYN 1_555 A HEC 110 C FE HEC 1_555 metalc 3.094 A CYN 105 B N CYN 1_555 A HEC 110 C FE HEC 1_555 ELECTRON TRANSPORT cytochrome c, cyanide, conformational transition, ELECTRON TRANSPORT A MET 80 A MET 80 1 A ILE 81 A ILE 81 -13.23 CYC_HORSE UNP 1 P00004 1 104 1I5T 1 104 P00004 A 1 1 104 BINDING SITE FOR RESIDUE CYN A 105 A CYN 105 Software 2 BINDING SITE FOR RESIDUE HEC A 110 A HEC 110 Software 11 A TYR 67 A TYR 67 2 1_555 A HEC 110 C HEC 2 1_555 A LYS 13 A LYS 13 11 1_555 A CYS 14 A CYS 14 11 1_555 A GLN 16 A GLN 16 11 1_555 A CYS 17 A CYS 17 11 1_555 A HIS 18 A HIS 18 11 1_555 A THR 28 A THR 28 11 1_555 A PRO 30 A PRO 30 11 1_555 A TRP 59 A TRP 59 11 1_555 A TYR 67 A TYR 67 11 1_555 A LEU 68 A LEU 68 11 1_555 A CYN 105 B CYN 11 1_555