0.013511 0.000000 0.000000 0.000000 0.009559 0.000000 0.000000 0.000000 0.020635 0.00000 0.00000 0.00000 Zhang, R.G. Dementiva, I. Collart, F. Quaite-Randall, E. Joachimiak, A. Alkire, R. Maltsev, N. Korolev, O. Dieckman, L. Midwest Center for Structural Genomics (MCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 74.015 104.616 48.462 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N O N 255 N C N 256 N C N 257 N SE N 258 N C N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N O N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 R C N 329 N O N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N N Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C N 397 N C N 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing Y 267 N doub Y 268 N sing Y 269 N sing N 270 N sing Y 271 N doub N 272 N sing Y 273 N doub N 274 N sing Y 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub Y 341 N sing Y 342 N sing N 343 N sing Y 344 N sing Y 345 N doub N 346 N sing Y 347 N doub N 348 N sing Y 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing Y 364 N doub Y 365 N sing Y 366 N sing N 367 N sing Y 368 N doub N 369 N sing Y 370 N doub N 371 N sing Y 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing US Proteins PSFGEY 0867 0887-3585 48 423 426 10.1002/prot.10159 12112707 Crystal structure of Bacillus subtilis ioli shows endonuclase IV fold with altered Zn binding. 2002 10.2210/pdb1i6n/pdb pdb_00001i6n 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2000-08-12 SBC-2 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.0332 1.0 19-ID APS 1.0332 SYNCHROTRON APS BEAMLINE 19-ID 31975.344 IOLI PROTEIN 1 man polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 174 nat water no yes (MSE)KLCFNEATTLENSNLKLDLELCEKHGYDYIEIRT(MSE)DKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFN NRDEKGHNEIITEFKG(MSE)(MSE)ETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFV GHPQCTVNTFEQAYEIVNTVNRDNVGLVLDSFHFHA(MSE)GSNIESLKQADGKKIFIYHIDDTEDFPIGFLTDEDRVWP GQGAIDLDAHLSALKEIGFSDVVSVELFRPEYYKLTAEEAIQTAKKTTVDVVSKYFS(MSE) MKLCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHN EIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEI VNTVNRDNVGLVLDSFHFHAMGSNIESLKQADGKKIFIYHIDDTEDFPIGFLTDEDRVWPGQGAIDLDAHLSALKEIGFS DVVSVELFRPEYYKLTAEEAIQTAKKTTVDVVSKYFSM A APC236 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus Escherichia sample IOLI OR B65B 1423 Bacillus subtilis 562 Escherichia coli BL21(DE3)PLYSS PLASMID PET30XALIC 1 2.93 58.08 VAPOR DIFFUSION, HANGING DROP 8.1 Ammonium sulfate, Tris buffer, sodium chloride, EDTA, pH 8.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 Midwest Center for Structural Genomics MCSG PSI, Protein Structure Initiative software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Refinement description Data collection 1 0 2002-03-13 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-08-09 1 5 2023-11-15 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 1.6A crystal structure of IOLI protein Y RCSB Y RCSB 2001-03-02 REL REL ZN ZINC ION HOH water 1I60 PDB ENTRY 1I60 PDB experimental model ZN 1 2 ZN ZN 401 A TIP 183 3 HOH HOH 402 A TIP 184 3 HOH HOH 403 A TIP 185 3 HOH HOH 404 A TIP 186 3 HOH HOH 405 A TIP 187 3 HOH HOH 406 A TIP 188 3 HOH HOH 407 A TIP 189 3 HOH HOH 408 A TIP 190 3 HOH HOH 409 A TIP 191 3 HOH HOH 410 A TIP 192 3 HOH HOH 411 A TIP 193 3 HOH HOH 412 A TIP 194 3 HOH HOH 413 A TIP 195 3 HOH HOH 414 A TIP 196 3 HOH HOH 415 A TIP 197 3 HOH HOH 416 A TIP 198 3 HOH HOH 417 A TIP 199 3 HOH HOH 418 A TIP 200 3 HOH HOH 419 A TIP 201 3 HOH HOH 420 A TIP 202 3 HOH HOH 421 A TIP 203 3 HOH HOH 422 A TIP 204 3 HOH HOH 423 A TIP 205 3 HOH HOH 424 A TIP 206 3 HOH HOH 425 A TIP 207 3 HOH HOH 426 A TIP 208 3 HOH HOH 427 A TIP 209 3 HOH HOH 428 A TIP 210 3 HOH HOH 429 A TIP 211 3 HOH HOH 430 A TIP 212 3 HOH HOH 431 A TIP 213 3 HOH HOH 432 A TIP 214 3 HOH HOH 433 A TIP 215 3 HOH HOH 434 A TIP 216 3 HOH HOH 435 A TIP 217 3 HOH HOH 436 A TIP 218 3 HOH HOH 437 A TIP 219 3 HOH HOH 438 A TIP 220 3 HOH HOH 439 A TIP 221 3 HOH HOH 440 A TIP 222 3 HOH HOH 441 A TIP 223 3 HOH HOH 442 A TIP 224 3 HOH HOH 443 A TIP 225 3 HOH HOH 444 A TIP 226 3 HOH HOH 445 A TIP 227 3 HOH HOH 446 A TIP 228 3 HOH HOH 447 A TIP 229 3 HOH HOH 448 A TIP 230 3 HOH HOH 449 A TIP 231 3 HOH HOH 450 A TIP 232 3 HOH HOH 451 A TIP 233 3 HOH HOH 452 A TIP 234 3 HOH HOH 453 A TIP 235 3 HOH HOH 454 A TIP 236 3 HOH HOH 455 A TIP 237 3 HOH HOH 456 A TIP 238 3 HOH HOH 457 A TIP 239 3 HOH HOH 458 A TIP 240 3 HOH HOH 459 A TIP 241 3 HOH HOH 460 A TIP 242 3 HOH HOH 461 A TIP 243 3 HOH HOH 462 A TIP 244 3 HOH HOH 463 A TIP 245 3 HOH HOH 464 A TIP 246 3 HOH HOH 465 A TIP 247 3 HOH HOH 466 A TIP 248 3 HOH HOH 467 A TIP 249 3 HOH HOH 468 A TIP 250 3 HOH HOH 469 A TIP 251 3 HOH HOH 470 A TIP 252 3 HOH HOH 471 A TIP 253 3 HOH HOH 472 A TIP 254 3 HOH HOH 473 A TIP 255 3 HOH HOH 474 A TIP 256 3 HOH HOH 475 A TIP 257 3 HOH HOH 476 A TIP 258 3 HOH HOH 477 A TIP 259 3 HOH HOH 478 A TIP 260 3 HOH HOH 479 A TIP 261 3 HOH HOH 480 A TIP 262 3 HOH HOH 481 A TIP 263 3 HOH HOH 482 A TIP 264 3 HOH HOH 483 A TIP 265 3 HOH HOH 484 A TIP 266 3 HOH HOH 485 A TIP 267 3 HOH HOH 486 A TIP 268 3 HOH HOH 487 A TIP 269 3 HOH HOH 488 A TIP 270 3 HOH HOH 489 A TIP 271 3 HOH HOH 490 A TIP 272 3 HOH HOH 491 A TIP 273 3 HOH HOH 492 A TIP 274 3 HOH HOH 493 A TIP 275 3 HOH HOH 494 A TIP 276 3 HOH HOH 495 A TIP 277 3 HOH HOH 496 A TIP 278 3 HOH HOH 497 A TIP 279 3 HOH HOH 498 A TIP 280 3 HOH HOH 499 A TIP 281 3 HOH HOH 500 A TIP 282 3 HOH HOH 501 A TIP 283 3 HOH HOH 502 A TIP 284 3 HOH HOH 503 A TIP 285 3 HOH HOH 504 A TIP 286 3 HOH HOH 505 A TIP 287 3 HOH HOH 506 A TIP 288 3 HOH HOH 507 A TIP 289 3 HOH HOH 508 A TIP 290 3 HOH HOH 509 A TIP 291 3 HOH HOH 510 A TIP 292 3 HOH HOH 511 A TIP 293 3 HOH HOH 512 A TIP 294 3 HOH HOH 513 A TIP 295 3 HOH HOH 514 A TIP 296 3 HOH HOH 515 A TIP 297 3 HOH HOH 516 A TIP 298 3 HOH HOH 517 A TIP 299 3 HOH HOH 518 A TIP 300 3 HOH HOH 519 A TIP 301 3 HOH HOH 520 A TIP 302 3 HOH HOH 521 A TIP 303 3 HOH HOH 522 A TIP 304 3 HOH HOH 523 A TIP 305 3 HOH HOH 524 A TIP 306 3 HOH HOH 525 A TIP 307 3 HOH HOH 526 A TIP 308 3 HOH HOH 527 A TIP 309 3 HOH HOH 528 A TIP 310 3 HOH HOH 529 A TIP 311 3 HOH HOH 530 A TIP 312 3 HOH HOH 531 A TIP 313 3 HOH HOH 532 A TIP 314 3 HOH HOH 533 A TIP 315 3 HOH HOH 534 A TIP 316 3 HOH HOH 535 A TIP 317 3 HOH HOH 536 A TIP 318 3 HOH HOH 537 A TIP 319 3 HOH HOH 538 A TIP 320 3 HOH HOH 539 A TIP 321 3 HOH HOH 540 A TIP 322 3 HOH HOH 541 A TIP 323 3 HOH HOH 542 A TIP 324 3 HOH HOH 543 A TIP 325 3 HOH HOH 544 A TIP 326 3 HOH HOH 545 A TIP 327 3 HOH HOH 546 A TIP 328 3 HOH HOH 547 A TIP 329 3 HOH HOH 548 A TIP 330 3 HOH HOH 549 A TIP 331 3 HOH HOH 550 A TIP 332 3 HOH HOH 551 A TIP 333 3 HOH HOH 552 A TIP 334 3 HOH HOH 553 A TIP 335 3 HOH HOH 554 A TIP 336 3 HOH HOH 555 A TIP 337 3 HOH HOH 556 A TIP 338 3 HOH HOH 557 A TIP 339 3 HOH HOH 558 A TIP 340 3 HOH HOH 559 A TIP 341 3 HOH HOH 560 A TIP 342 3 HOH HOH 561 A TIP 343 3 HOH HOH 562 A TIP 344 3 HOH HOH 563 A TIP 345 3 HOH HOH 564 A TIP 346 3 HOH HOH 565 A TIP 347 3 HOH HOH 566 A TIP 348 3 HOH HOH 567 A TIP 349 3 HOH HOH 568 A TIP 350 3 HOH HOH 569 A TIP 351 3 HOH HOH 570 A TIP 352 3 HOH HOH 571 A TIP 353 3 HOH HOH 572 A TIP 354 3 HOH HOH 573 A TIP 355 3 HOH HOH 574 A TIP 356 3 HOH HOH 575 A MSE 1 n 1 MSE 1 A LYS 2 n 2 LYS 2 A LEU 3 n 3 LEU 3 A CYS 4 n 4 CYS 4 A PHE 5 n 5 PHE 5 A ASN 6 n 6 ASN 6 A GLU 7 n 7 GLU 7 A ALA 8 n 8 ALA 8 A THR 9 n 9 THR 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A GLU 12 n 12 GLU 12 A ASN 13 n 13 ASN 13 A SER 14 n 14 SER 14 A ASN 15 n 15 ASN 15 A LEU 16 n 16 LEU 16 A LYS 17 n 17 LYS 17 A LEU 18 n 18 LEU 18 A ASP 19 n 19 ASP 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A CYS 23 n 23 CYS 23 A GLU 24 n 24 GLU 24 A LYS 25 n 25 LYS 25 A HIS 26 n 26 HIS 26 A GLY 27 n 27 GLY 27 A TYR 28 n 28 TYR 28 A ASP 29 n 29 ASP 29 A TYR 30 n 30 TYR 30 A ILE 31 n 31 ILE 31 A GLU 32 n 32 GLU 32 A ILE 33 n 33 ILE 33 A ARG 34 n 34 ARG 34 A THR 35 n 35 THR 35 A MSE 36 n 36 MSE 36 A ASP 37 n 37 ASP 37 A LYS 38 n 38 LYS 38 A LEU 39 n 39 LEU 39 A PRO 40 n 40 PRO 40 A GLU 41 n 41 GLU 41 A TYR 42 n 42 TYR 42 A LEU 43 n 43 LEU 43 A LYS 44 n 44 LYS 44 A ASP 45 n 45 ASP 45 A HIS 46 n 46 HIS 46 A SER 47 n 47 SER 47 A LEU 48 n 48 LEU 48 A ASP 49 n 49 ASP 49 A ASP 50 n 50 ASP 50 A LEU 51 n 51 LEU 51 A ALA 52 n 52 ALA 52 A GLU 53 n 53 GLU 53 A TYR 54 n 54 TYR 54 A PHE 55 n 55 PHE 55 A GLN 56 n 56 GLN 56 A THR 57 n 57 THR 57 A HIS 58 n 58 HIS 58 A HIS 59 n 59 HIS 59 A ILE 60 n 60 ILE 60 A LYS 61 n 61 LYS 61 A PRO 62 n 62 PRO 62 A LEU 63 n 63 LEU 63 A ALA 64 n 64 ALA 64 A LEU 65 n 65 LEU 65 A ASN 66 n 66 ASN 66 A ALA 67 n 67 ALA 67 A LEU 68 n 68 LEU 68 A VAL 69 n 69 VAL 69 A PHE 70 n 70 PHE 70 A PHE 71 n 71 PHE 71 A ASN 72 n 72 ASN 72 A ASN 73 n 73 ASN 73 A ARG 74 n 74 ARG 74 A ASP 75 n 75 ASP 75 A GLU 76 n 76 GLU 76 A LYS 77 n 77 LYS 77 A GLY 78 n 78 GLY 78 A HIS 79 n 79 HIS 79 A ASN 80 n 80 ASN 80 A GLU 81 n 81 GLU 81 A ILE 82 n 82 ILE 82 A ILE 83 n 83 ILE 83 A THR 84 n 84 THR 84 A GLU 85 n 85 GLU 85 A PHE 86 n 86 PHE 86 A LYS 87 n 87 LYS 87 A GLY 88 n 88 GLY 88 A MSE 89 n 89 MSE 89 A MSE 90 n 90 MSE 90 A GLU 91 n 91 GLU 91 A THR 92 n 92 THR 92 A CYS 93 n 93 CYS 93 A LYS 94 n 94 LYS 94 A THR 95 n 95 THR 95 A LEU 96 n 96 LEU 96 A GLY 97 n 97 GLY 97 A VAL 98 n 98 VAL 98 A LYS 99 n 99 LYS 99 A TYR 100 n 100 TYR 100 A VAL 101 n 101 VAL 101 A VAL 102 n 102 VAL 102 A ALA 103 n 103 ALA 103 A VAL 104 n 104 VAL 104 A PRO 105 n 105 PRO 105 A LEU 106 n 106 LEU 106 A VAL 107 n 107 VAL 107 A THR 108 n 108 THR 108 A GLU 109 n 109 GLU 109 A GLN 110 n 110 GLN 110 A LYS 111 n 111 LYS 111 A ILE 112 n 112 ILE 112 A VAL 113 n 113 VAL 113 A LYS 114 n 114 LYS 114 A GLU 115 n 115 GLU 115 A GLU 116 n 116 GLU 116 A ILE 117 n 117 ILE 117 A LYS 118 n 118 LYS 118 A LYS 119 n 119 LYS 119 A SER 120 n 120 SER 120 A SER 121 n 121 SER 121 A VAL 122 n 122 VAL 122 A ASP 123 n 123 ASP 123 A VAL 124 n 124 VAL 124 A LEU 125 n 125 LEU 125 A THR 126 n 126 THR 126 A GLU 127 n 127 GLU 127 A LEU 128 n 128 LEU 128 A SER 129 n 129 SER 129 A ASP 130 n 130 ASP 130 A ILE 131 n 131 ILE 131 A ALA 132 n 132 ALA 132 A GLU 133 n 133 GLU 133 A PRO 134 n 134 PRO 134 A TYR 135 n 135 TYR 135 A GLY 136 n 136 GLY 136 A VAL 137 n 137 VAL 137 A LYS 138 n 138 LYS 138 A ILE 139 n 139 ILE 139 A ALA 140 n 140 ALA 140 A LEU 141 n 141 LEU 141 A GLU 142 n 142 GLU 142 A PHE 143 n 143 PHE 143 A VAL 144 n 144 VAL 144 A GLY 145 n 145 GLY 145 A HIS 146 n 146 HIS 146 A PRO 147 n 147 PRO 147 A GLN 148 n 148 GLN 148 A CYS 149 n 149 CYS 149 A THR 150 n 150 THR 150 A VAL 151 n 151 VAL 151 A ASN 152 n 152 ASN 152 A THR 153 n 153 THR 153 A PHE 154 n 154 PHE 154 A GLU 155 n 155 GLU 155 A GLN 156 n 156 GLN 156 A ALA 157 n 157 ALA 157 A TYR 158 n 158 TYR 158 A GLU 159 n 159 GLU 159 A ILE 160 n 160 ILE 160 A VAL 161 n 161 VAL 161 A ASN 162 n 162 ASN 162 A THR 163 n 163 THR 163 A VAL 164 n 164 VAL 164 A ASN 165 n 165 ASN 165 A ARG 166 n 166 ARG 166 A ASP 167 n 167 ASP 167 A ASN 168 n 168 ASN 168 A VAL 169 n 169 VAL 169 A GLY 170 n 170 GLY 170 A LEU 171 n 171 LEU 171 A VAL 172 n 172 VAL 172 A LEU 173 n 173 LEU 173 A ASP 174 n 174 ASP 174 A SER 175 n 175 SER 175 A PHE 176 n 176 PHE 176 A HIS 177 n 177 HIS 177 A PHE 178 n 178 PHE 178 A HIS 179 n 179 HIS 179 A ALA 180 n 180 ALA 180 A MSE 181 n 181 MSE 181 A GLY 182 n 182 GLY 182 A SER 183 n 183 SER 183 A ASN 184 n 184 ASN 184 A ILE 185 n 185 ILE 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A LEU 188 n 188 LEU 188 A LYS 189 n 189 LYS 189 A GLN 190 n 190 GLN 190 A ALA 191 n 191 ALA 191 A ASP 192 n 192 ASP 192 A GLY 193 n 193 GLY 193 A LYS 194 n 194 LYS 194 A LYS 195 n 195 LYS 195 A ILE 196 n 196 ILE 196 A PHE 197 n 197 PHE 197 A ILE 198 n 198 ILE 198 A TYR 199 n 199 TYR 199 A HIS 200 n 200 HIS 200 A ILE 201 n 201 ILE 201 A ASP 202 n 202 ASP 202 A ASP 203 n 203 ASP 203 A THR 204 n 204 THR 204 A GLU 205 n 205 GLU 205 A ASP 206 n 206 ASP 206 A PHE 207 n 207 PHE 207 A PRO 208 n 208 PRO 208 A ILE 209 n 209 ILE 209 A GLY 210 n 210 GLY 210 A PHE 211 n 211 PHE 211 A LEU 212 n 212 LEU 212 A THR 213 n 213 THR 213 A ASP 214 n 214 ASP 214 A GLU 215 n 215 GLU 215 A ASP 216 n 216 ASP 216 A ARG 217 n 217 ARG 217 A VAL 218 n 218 VAL 218 A TRP 219 n 219 TRP 219 A PRO 220 n 220 PRO 220 A GLY 221 n 221 GLY 221 A GLN 222 n 222 GLN 222 A GLY 223 n 223 GLY 223 A ALA 224 n 224 ALA 224 A ILE 225 n 225 ILE 225 A ASP 226 n 226 ASP 226 A LEU 227 n 227 LEU 227 A ASP 228 n 228 ASP 228 A ALA 229 n 229 ALA 229 A HIS 230 n 230 HIS 230 A LEU 231 n 231 LEU 231 A SER 232 n 232 SER 232 A ALA 233 n 233 ALA 233 A LEU 234 n 234 LEU 234 A LYS 235 n 235 LYS 235 A GLU 236 n 236 GLU 236 A ILE 237 n 237 ILE 237 A GLY 238 n 238 GLY 238 A PHE 239 n 239 PHE 239 A SER 240 n 240 SER 240 A ASP 241 n 241 ASP 241 A VAL 242 n 242 VAL 242 A VAL 243 n 243 VAL 243 A SER 244 n 244 SER 244 A VAL 245 n 245 VAL 245 A GLU 246 n 246 GLU 246 A LEU 247 n 247 LEU 247 A PHE 248 n 248 PHE 248 A ARG 249 n 249 ARG 249 A PRO 250 n 250 PRO 250 A GLU 251 n 251 GLU 251 A TYR 252 n 252 TYR 252 A TYR 253 n 253 TYR 253 A LYS 254 n 254 LYS 254 A LEU 255 n 255 LEU 255 A THR 256 n 256 THR 256 A ALA 257 n 257 ALA 257 A GLU 258 n 258 GLU 258 A GLU 259 n 259 GLU 259 A ALA 260 n 260 ALA 260 A ILE 261 n 261 ILE 261 A GLN 262 n 262 GLN 262 A THR 263 n 263 THR 263 A ALA 264 n 264 ALA 264 A LYS 265 n 265 LYS 265 A LYS 266 n 266 LYS 266 A THR 267 n 267 THR 267 A THR 268 n 268 THR 268 A VAL 269 n 269 VAL 269 A ASP 270 n 270 ASP 270 A VAL 271 n 271 VAL 271 A VAL 272 n 272 VAL 272 A SER 273 n 273 SER 273 A LYS 274 n 274 LYS 274 A TYR 275 n 275 TYR 275 A PHE 276 n 276 PHE 276 A SER 277 n 277 SER 277 A MSE 278 n 278 MSE 278 A author_defined_assembly 1 monomeric A GLU 142 A OE2 GLU 142 1_555 A ZN 401 B ZN ZN 1_555 A ASP 174 A OD2 ASP 174 1_555 101.1 A GLU 142 A OE2 GLU 142 1_555 A ZN 401 B ZN ZN 1_555 A HIS 200 A ND1 HIS 200 1_555 109.7 A ASP 174 A OD2 ASP 174 1_555 A ZN 401 B ZN ZN 1_555 A HIS 200 A ND1 HIS 200 1_555 118.7 A GLU 142 A OE2 GLU 142 1_555 A ZN 401 B ZN ZN 1_555 A GLU 246 A OE1 GLU 246 1_555 129.5 A ASP 174 A OD2 ASP 174 1_555 A ZN 401 B ZN ZN 1_555 A GLU 246 A OE1 GLU 246 1_555 89.9 A HIS 200 A ND1 HIS 200 1_555 A ZN 401 B ZN ZN 1_555 A GLU 246 A OE1 GLU 246 1_555 107.2 A MSE 1 SELENOMETHIONINE A MSE 1 MET A MSE 36 SELENOMETHIONINE A MSE 36 MET A MSE 89 SELENOMETHIONINE A MSE 89 MET A MSE 90 SELENOMETHIONINE A MSE 90 MET A MSE 181 SELENOMETHIONINE A MSE 181 MET A MSE 278 SELENOMETHIONINE A MSE 278 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 3 A O LEU 3 A N TYR 30 A N TYR 30 A N ILE 31 A N ILE 31 A O LYS 61 A O LYS 61 A N LEU 65 A N LEU 65 A O TYR 100 A O TYR 100 A N VAL 101 A N VAL 101 A O LYS 138 A O LYS 138 A O ILE 139 A O ILE 139 A N GLY 170 A N GLY 170 A O LEU 171 A O LEU 171 A N PHE 197 A N PHE 197 A N TYR 199 A N TYR 199 A O VAL 242 A O VAL 242 A N VAL 243 A N VAL 243 A O LYS 2 A O LYS 2 A O ASP 203 A O ASP 203 A N VAL 218 A N VAL 218 1 A A O O TRP HOH 219 568 2.15 1 -25.50 2.70 111.00 85.50 A A A N CA C LEU LEU LEU 68 68 68 N 1 A ASP 37 -148.75 -57.83 1 A ALA 67 68.63 106.27 1 A PHE 70 67.76 60.37 1 A ASP 202 -176.96 -169.86 1 A SER 240 -169.61 12.24 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER_REP.PARAM ION.PARAM ION.TOP 12.6 0.02 0.00 0.00 -3.07 0.00 3.05 0.238 0.006 0.201 1.80 19.90 1737 35606 34966 5.0 98.2 RANDOM 365191.01 0.00 1 RESTRAINED THROUGHOUT 0.0 10000 MOLECULAR REPLACEMENT PDB ENTRY 1I60 FLAT MODEL 43.09 0.411 0.24 0.20 5.00 0.10 -0.04 1.80 19.90 174 2404 1 0 2229 0.005 1.4 21.4 0.69 1.31 1.50 1.67 2.00 2.37 2.00 3.38 2.50 0.243 0.014 0.198 1.91 290 5294 6 5.2 96.0 9.6 1.8 500 1I6N 35838 35623 6.0 6.0 0.068 1 22.5 6.2 99.4 0.223 1.8 1.86 6.1 3449 5.1 97.7 data scaling d*TREK data reduction HKL-2000 refinement CNS data reduction d*TREK data scaling HKL-2000 phasing CNS 1.8 A Crystal structure of IOLI protein with a binding zinc atom 1 N N 2 N N 3 N N A ALA 8 A ALA 8 HELX_P A LEU 11 A LEU 11 5 1 4 A ASN 15 A ASN 15 HELX_P A HIS 26 A HIS 26 1 2 12 A ASP 37 A ASP 37 HELX_P A LEU 43 A LEU 43 1 3 7 A SER 47 A SER 47 HELX_P A THR 57 A THR 57 1 4 11 A ASP 75 A ASP 75 HELX_P A GLY 97 A GLY 97 1 5 23 A VAL 113 A VAL 113 HELX_P A GLU 133 A GLU 133 1 6 21 A PRO 134 A PRO 134 HELX_P A GLY 136 A GLY 136 5 7 3 A THR 153 A THR 153 HELX_P A ASN 165 A ASN 165 1 8 13 A SER 175 A SER 175 HELX_P A MSE 181 A MSE 181 1 9 7 A ASN 184 A ASN 184 HELX_P A GLN 190 A GLN 190 1 10 7 A ASP 192 A ASP 192 HELX_P A LYS 194 A LYS 194 5 11 3 A THR 213 A THR 213 HELX_P A GLU 215 A GLU 215 5 12 3 A ASP 226 A ASP 226 HELX_P A ILE 237 A ILE 237 1 13 12 A ARG 249 A ARG 249 HELX_P A LEU 255 A LEU 255 5 14 7 A THR 256 A THR 256 HELX_P A SER 273 A SER 273 1 15 18 covale 1.331 both A MSE 1 A C MSE 1 1_555 A LYS 2 A N LYS 2 1_555 covale 1.327 both A THR 35 A C THR 35 1_555 A MSE 36 A N MSE 36 1_555 covale 1.330 both A MSE 36 A C MSE 36 1_555 A ASP 37 A N ASP 37 1_555 covale 1.328 both A GLY 88 A C GLY 88 1_555 A MSE 89 A N MSE 89 1_555 covale 1.330 both A MSE 89 A C MSE 89 1_555 A MSE 90 A N MSE 90 1_555 covale 1.328 both A MSE 90 A C MSE 90 1_555 A GLU 91 A N GLU 91 1_555 covale 1.330 both A ALA 180 A C ALA 180 1_555 A MSE 181 A N MSE 181 1_555 covale 1.332 both A MSE 181 A C MSE 181 1_555 A GLY 182 A N GLY 182 1_555 covale 1.325 both A SER 277 A C SER 277 1_555 A MSE 278 A N MSE 278 1_555 metalc 2.015 A GLU 142 A OE2 GLU 142 1_555 A ZN 401 B ZN ZN 1_555 metalc 2.071 A ASP 174 A OD2 ASP 174 1_555 A ZN 401 B ZN ZN 1_555 metalc 2.130 A HIS 200 A ND1 HIS 200 1_555 A ZN 401 B ZN ZN 1_555 metalc 2.095 A GLU 246 A OE1 GLU 246 1_555 A ZN 401 B ZN ZN 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION BETA BARREL, STRUCTURAL GENOMICS, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION IOLI_BACSU UNP 1 1 P42419 MKLCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHN EIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEI VNTVNRDNVGLVLDSFHFHAMGSNIESLKQADGKKIFIYHIDDTEDFPIGFLTDEDRVWPGQGAIDLDAHLSALKEIGFS DVVSVELFRPEYYKLTAEEAIQTAKKTTVDVVSKYFSM 1 278 1I6N 1 278 P42419 A 1 1 278 1 MET modified residue MSE 1 1I6N A P42419 UNP 1 1 1 MET modified residue MSE 36 1I6N A P42419 UNP 36 36 1 MET modified residue MSE 89 1I6N A P42419 UNP 89 89 1 MET modified residue MSE 90 1I6N A P42419 UNP 90 90 1 MET modified residue MSE 181 1I6N A P42419 UNP 181 181 1 MET modified residue MSE 278 1I6N A P42419 UNP 278 278 9 2 parallel parallel parallel parallel parallel parallel parallel parallel anti-parallel A LYS 2 A LYS 2 A ASN 6 A ASN 6 A TYR 30 A TYR 30 A ARG 34 A ARG 34 A LYS 61 A LYS 61 A VAL 69 A VAL 69 A TYR 100 A TYR 100 A VAL 104 A VAL 104 A LYS 138 A LYS 138 A GLU 142 A GLU 142 A VAL 169 A VAL 169 A ASP 174 A ASP 174 A ILE 196 A ILE 196 A ILE 201 A ILE 201 A VAL 242 A VAL 242 A VAL 245 A VAL 245 A LYS 2 A LYS 2 A ASN 6 A ASN 6 A ASP 203 A ASP 203 A THR 204 A THR 204 A ARG 217 A ARG 217 A VAL 218 A VAL 218 BINDING SITE FOR RESIDUE ZN A 401 A ZN 401 Software 4 A GLU 142 A GLU 142 4 1_555 A ASP 174 A ASP 174 4 1_555 A HIS 200 A HIS 200 4 1_555 A GLU 246 A GLU 246 4 1_555 18 P 21 21 2