0.008218 0.000000 0.000000 0.000000 0.008218 0.000000 0.000000 0.000000 0.007248 0.00000 0.00000 0.00000 Tishchenko, S. Nikulin, A. Fomenkova, N. Nevskaya, N. Nikonov, O. Dumas, P. Moine, H. Ehresmann, B. Ehresmann, C. Piendl, W. Lamzin, V. Garber, M. Nikonov, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 121.687 121.687 137.975 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 311 311 324 10.1006/jmbi.2001.4877 11478863 Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii. 2001 UK J.Mol.Biol. JMOBAK 0070 0022-2836 279 233 244 10.1006/jmbi.1998.1758 Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site. 1998 UK J.Mol.Biol. JMOBAK 0070 0022-2836 280 639 654 10.1006/jmbi.1998.1915 NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA 1998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 110 1 110 1 IMAGE PLATE 2000-05-17 MARRESEARCH IMAGE PLATE 2000-06-20 MARRESEARCH CCD 2000-06-25 MARRESEARCH Si(111) MAD M x-ray 1 Si(111) MAD M x-ray 1 Double crystal focussing monochromator SINGLE WAVELENGTH M x-ray 1 0.97624 1.0 0.97933 1.0 0.97948 1.0 0.97949 1.0 0.97921 1.0 0.97435 1.0 0.91 1.0 BM30A ESRF 0.97624,0.97933,0.97948 SYNCHROTRON ESRF BEAMLINE BM30A BM30A ESRF 0.97949,0.97921,0.97435 SYNCHROTRON ESRF BEAMLINE BM30A X11 EMBL/DESY, Hamburg 0.91 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 11894.089 16S RRNA FRAGMENT 2 syn polymer 14744.127 30S RIBOSOMAL PROTEIN S8P 2 man polymer 96.063 SULFATE ION 4 syn non-polymer 18.015 water 215 nat water no no GGGCCCGGUAAGUCUCUUCGGAGAUACUGCCGGGCCC GGGCCCGGUAAGUCUCUUCGGAGAUACUGCCGGGCCC C,D polyribonucleotide no yes MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKV(MSE)QDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIK PRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGV(MSE)SHEEAKKRGLGGRLLAYVY MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanocaldococcus Escherichia sample MJAS8 2190 Methanocaldococcus jannaschii 562 Escherichia coli B834(DE3) PLASMID PET11A 1 4.79 74.34 VAPOR DIFFUSION, HANGING DROP 6.5 ammonium sulphate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 ammonium sulphate 1 sodium cacodylate 1 -8.183 1 19 C 1 C 37 0.252 C_G1:C37_C 1 -2.050 -0.272 -0.102 -0.067 -2.367 1 19 C 2 C 36 0.194 C_G2:C36_C 2 -6.632 -0.164 0.108 -0.123 -1.946 1 19 C 3 C 35 3.997 C_G3:C35_C 3 -5.116 -0.315 0.108 -0.070 5.558 1 19 C 4 C 34 0.056 C_C4:G34_C 4 -6.259 0.173 -0.045 -0.122 2.479 1 19 C 5 C 33 -1.580 C_C5:G33_C 5 -6.796 0.158 0.207 -0.150 4.384 1 19 C 6 C 32 1.814 C_C6:G32_C 6 -9.964 0.093 -0.263 -0.058 -1.664 1 19 C 7 C 31 1.328 C_G7:C31_C 7 -12.916 -0.243 -0.126 -0.152 -11.624 1 19 C 8 C 30 0.763 C_G8:C30_C 8 -14.445 -0.261 -0.135 -0.157 -18.880 28 C 9 C 29 -4.254 C_U9:G29_C 9 -7.986 2.382 0.253 -0.524 -4.246 1 20 C 11 C 28 4.391 C_A11:U28_C 10 -3.035 -0.053 -0.073 -0.140 -20.361 1 19 C 12 C 27 0.512 C_G12:C27_C 11 -21.195 -0.119 -0.465 -0.093 -27.948 9 C 25 C 26 2.322 C_U25:A26_C 12 6.062 6.623 1.992 -0.025 14.686 1 20 C 13 C 24 -5.387 C_U13:A24_C 13 -21.153 0.143 -0.126 0.009 8.447 1 19 C 14 C 23 -0.080 C_C14:G23_C 14 -14.169 0.130 -0.141 -0.121 3.453 1 20 C 15 C 22 -3.133 C_U15:A22_C 15 -13.299 0.079 0.115 -0.142 9.534 1 19 C 16 C 21 -2.088 C_C16:G21_C 16 -14.810 0.260 -0.287 -0.090 -13.677 C 17 C 20 -108.792 C_U17:G20_C 17 -18.230 1.038 -0.141 -4.964 -8.080 1 19 D 1 D 37 -1.192 D_G1:C37_D 18 -3.200 -0.174 -0.347 -0.061 2.850 1 19 D 2 D 36 -0.879 D_G2:C36_D 19 -5.887 -0.172 0.383 -0.165 -1.144 1 19 D 3 D 35 0.206 D_G3:C35_D 20 -7.438 -0.274 0.064 -0.109 1.711 1 19 D 4 D 34 0.402 D_C4:G34_D 21 -5.185 0.158 0.024 -0.071 -0.718 1 19 D 5 D 33 -0.672 D_C5:G33_D 22 -4.405 -0.002 0.329 -0.111 -2.033 1 19 D 6 D 32 -0.410 D_C6:G32_D 23 -6.167 0.109 0.316 -0.074 0.679 1 19 D 7 D 31 2.413 D_G7:C31_D 24 -5.896 -0.164 0.010 -0.102 -16.216 1 19 D 8 D 30 0.187 D_G8:C30_D 25 -17.495 -0.247 -0.352 -0.071 -13.594 28 D 9 D 29 -3.297 D_U9:G29_D 26 -15.184 2.311 -0.049 -0.500 -4.158 1 20 D 11 D 28 -1.141 D_A11:U28_D 27 -9.979 -0.081 -0.453 -0.147 -15.673 1 19 D 12 D 27 1.224 D_G12:C27_D 28 -22.639 -0.246 -0.429 -0.184 -29.488 9 D 25 D 26 2.422 D_U25:A26_D 29 10.633 6.896 2.127 -0.172 23.179 1 20 D 13 D 24 -2.517 D_U13:A24_D 30 -17.320 -0.184 -0.403 0.120 10.581 1 19 D 14 D 23 -0.981 D_C14:G23_D 31 -12.202 0.113 -0.022 -0.086 10.672 1 20 D 15 D 22 1.820 D_U15:A22_D 32 -12.054 -0.005 -0.316 -0.092 2.826 1 19 D 16 D 21 3.758 D_C16:G21_D 33 -7.083 0.185 0.014 -0.058 -11.072 2 D 17 D 20 -104.598 D_U17:G20_D 34 -4.159 0.996 0.063 -5.195 2.833 30.096 C C 1 2 7.901 C C 37 36 3.115 4.091 0.040 -1.911 CC_G1G2:C36C37_CC 1 -0.275 0.531 29.822 -4.444 -0.129 2.982 30.969 C C 2 3 4.854 C C 36 35 3.117 2.587 0.719 -1.986 CC_G2G3:C35C36_CC 2 1.917 -3.596 30.805 -4.187 -1.001 2.713 30.411 C C 3 4 8.875 C C 35 34 3.029 4.637 -1.061 -2.168 CC_G3C4:G34C35_CC 3 -1.261 2.414 30.038 -4.953 1.800 2.549 31.019 C C 4 5 15.044 C C 34 33 3.218 7.944 -0.024 -2.197 CC_C4C5:G33G34_CC 4 -3.425 6.487 29.816 -5.484 -0.549 2.820 29.105 C C 5 6 6.851 C C 33 32 3.093 3.435 -0.668 -2.116 CC_C5C6:G32G33_CC 5 0.369 -0.736 28.904 -4.892 1.402 2.665 29.069 C C 6 7 19.399 C C 32 31 3.415 9.555 -0.132 -1.764 CC_C6G7:C31G32_CC 6 -2.081 4.225 27.409 -5.523 -0.174 2.860 33.777 C C 7 8 14.444 C C 31 30 3.422 8.311 0.597 -1.932 CC_G7G8:C30C31_CC 7 -0.049 0.084 32.768 -4.637 -1.035 3.218 43.977 C C 8 9 8.613 C C 30 29 3.493 6.425 0.024 -1.694 CC_G8U9:G29C30_CC 8 2.929 -3.927 43.434 -2.889 0.254 1.965 45.542 C C 9 11 9.440 C C 29 28 2.825 7.226 -2.523 -1.601 CC_U9A11:U28G29_CC 9 9.948 -12.996 43.937 -2.543 3.913 2.945 32.706 C C 11 12 17.950 C C 28 27 3.743 9.909 0.086 -2.004 CC_A11G12:C27U28_CC 10 5.482 -9.931 30.733 -5.369 0.848 -2.130 -179.948 C C 12 25 -31.037 C C 27 26 -2.128 62.075 -0.307 2.236 CC_G12U25:A26C27_CC 11 155.922 77.961 -179.514 -1.116 -0.157 2.398 155.782 C C 25 13 -17.733 C C 26 24 0.728 -32.489 1.889 -2.368 CC_U25U13:A24A26_CC 12 148.585 -81.100 59.083 -1.015 -0.070 2.953 33.974 C C 13 14 13.724 C C 24 23 3.370 7.939 -0.303 -1.506 CC_U13C14:G23A24_CC 13 -2.912 5.033 32.935 -3.826 0.061 3.110 33.794 C C 14 15 9.236 C C 23 22 3.384 5.345 -0.263 -1.579 CC_C14U15:A22G23_CC 14 -1.903 3.288 33.328 -3.580 0.144 3.035 34.092 C C 15 16 4.875 C C 22 21 3.115 2.844 0.523 -1.386 CC_U15C16:G21A22_CC 15 5.376 -9.216 33.561 -2.793 -0.083 3.284 97.480 C C 16 17 4.558 C C 21 20 3.398 6.845 -0.954 -0.781 CC_C16U17:G20G21_CC 16 8.333 -5.549 97.033 -0.636 0.777 2.638 28.862 D D 1 2 7.004 D D 37 36 2.938 3.468 -0.015 -2.077 DD_G1G2:C36C37_DD 17 -4.683 9.458 28.280 -4.833 -0.867 2.533 33.634 D D 2 3 16.004 D D 36 35 3.155 9.134 -0.005 -1.863 DD_G2G3:C35C36_DD 18 3.482 -6.101 32.221 -4.547 0.514 2.813 33.538 D D 3 4 10.325 D D 35 34 3.103 5.928 0.102 -1.428 DD_G3C4:G34C35_DD 19 0.363 -0.633 33.023 -3.363 -0.123 2.878 30.039 D D 4 5 9.375 D D 34 33 3.247 4.831 -0.030 -2.009 DD_C4C5:G33G34_DD 20 -2.948 5.721 29.513 -4.814 -0.515 2.850 33.682 D D 5 6 6.899 D D 33 32 3.073 3.986 -0.528 -2.018 DD_C5C6:G32G33_DD 21 -2.344 4.057 33.372 -4.072 0.565 2.392 29.742 D D 6 7 15.746 D D 32 31 3.023 7.987 -0.054 -1.994 DD_C6G7:C31G32_DD 22 0.205 -0.405 28.672 -5.296 0.142 2.842 34.911 D D 7 8 19.984 D D 31 30 3.653 11.766 0.204 -1.874 DD_G7G8:C30C31_DD 23 1.229 -2.087 32.905 -4.948 -0.150 3.290 43.309 D D 8 9 1.499 D D 30 29 3.336 1.106 -0.234 -1.507 DD_G8U9:G29C30_DD 24 1.392 -1.887 43.274 -2.152 0.455 1.949 47.173 D D 9 11 12.822 D D 29 28 3.143 10.070 -2.692 -1.568 DD_U9A11:U28G29_DD 25 12.932 -16.467 44.388 -2.623 4.215 2.914 33.131 D D 11 12 18.744 D D 28 27 3.696 10.499 0.375 -2.003 DD_A11G12:C27U28_DD 26 3.006 -5.367 31.327 -5.352 -0.132 -2.364 -177.670 D D 12 25 -29.878 D D 27 26 -2.220 59.677 0.173 2.269 DD_G12U25:A26C27_DD 27 156.899 78.554 -157.822 -1.056 -0.121 2.505 159.686 D D 25 13 -18.483 D D 26 24 0.778 -34.289 1.981 -2.240 DD_U25U13:A24A26_DD 28 153.302 -82.633 54.769 -0.919 -0.026 2.938 38.263 D D 13 14 16.571 D D 24 23 3.529 10.661 -0.479 -1.802 DD_U13C14:G23A24_DD 29 -7.457 11.591 36.061 -4.116 -0.225 2.604 28.465 D D 14 15 14.609 D D 23 22 3.161 7.103 -0.731 -2.082 DD_C14U15:A22G23_DD 30 -2.312 4.755 27.487 -5.693 1.011 3.086 35.985 D D 15 16 8.726 D D 22 21 3.457 5.361 0.508 -1.788 DD_U15C16:G21A22_DD 31 -4.085 6.648 35.369 -3.664 -1.409 3.311 95.974 D D 16 17 3.521 D D 21 20 3.458 5.227 -1.394 -0.884 DD_C16U17:G20G21_DD 32 9.025 -6.080 95.544 -0.689 1.101 repository Initial release Version format compliance Version format compliance 1 0 2001-08-03 1 1 2008-04-27 1 2 2011-07-13 The NMR structure of S8 16S rRNA binding site from E. Coli RCSB Y RCSB 2001-03-05 REL REL SO4 SULFATE ION HOH water The rRNA fragment was obtained by transcription from synthetic DNA template using T7 RNA polymerase. sample SO4 4 3 SO4 SO4 38 C SO4 3 3 SO4 SO4 38 D SO4 1 3 SO4 SO4 131 B SO4 2 3 SO4 SO4 132 B WAT 7 4 HOH HOH 39 C WAT 8 4 HOH HOH 40 C WAT 9 4 HOH HOH 41 C WAT 16 4 HOH HOH 42 C WAT 17 4 HOH HOH 43 C WAT 19 4 HOH HOH 44 C WAT 21 4 HOH HOH 45 C WAT 24 4 HOH HOH 46 C WAT 25 4 HOH HOH 47 C WAT 27 4 HOH HOH 48 C WAT 29 4 HOH HOH 49 C WAT 30 4 HOH HOH 50 C WAT 33 4 HOH HOH 51 C WAT 35 4 HOH HOH 52 C WAT 36 4 HOH HOH 53 C WAT 39 4 HOH HOH 54 C WAT 40 4 HOH HOH 55 C WAT 42 4 HOH HOH 56 C WAT 46 4 HOH HOH 57 C WAT 47 4 HOH HOH 58 C WAT 53 4 HOH HOH 59 C WAT 54 4 HOH HOH 60 C WAT 57 4 HOH HOH 61 C WAT 60 4 HOH HOH 62 C WAT 62 4 HOH HOH 63 C WAT 64 4 HOH HOH 64 C WAT 65 4 HOH HOH 65 C WAT 67 4 HOH HOH 66 C WAT 72 4 HOH HOH 67 C WAT 73 4 HOH HOH 68 C WAT 75 4 HOH HOH 69 C WAT 76 4 HOH HOH 70 C WAT 79 4 HOH HOH 71 C WAT 81 4 HOH HOH 72 C WAT 83 4 HOH HOH 73 C WAT 87 4 HOH HOH 74 C WAT 88 4 HOH HOH 75 C WAT 90 4 HOH HOH 76 C WAT 92 4 HOH HOH 77 C WAT 94 4 HOH HOH 78 C WAT 98 4 HOH HOH 79 C WAT 100 4 HOH HOH 80 C WAT 104 4 HOH HOH 81 C WAT 110 4 HOH HOH 82 C WAT 113 4 HOH HOH 83 C WAT 115 4 HOH HOH 84 C WAT 119 4 HOH HOH 85 C WAT 120 4 HOH HOH 86 C WAT 121 4 HOH HOH 87 C WAT 124 4 HOH HOH 88 C WAT 125 4 HOH HOH 89 C WAT 126 4 HOH HOH 90 C WAT 127 4 HOH HOH 91 C WAT 132 4 HOH HOH 92 C WAT 138 4 HOH HOH 93 C WAT 147 4 HOH HOH 94 C WAT 149 4 HOH HOH 95 C WAT 152 4 HOH HOH 96 C WAT 155 4 HOH HOH 97 C WAT 158 4 HOH HOH 98 C WAT 159 4 HOH HOH 99 C WAT 163 4 HOH HOH 100 C WAT 166 4 HOH HOH 101 C WAT 168 4 HOH HOH 102 C WAT 170 4 HOH HOH 103 C WAT 172 4 HOH HOH 104 C WAT 173 4 HOH HOH 105 C WAT 174 4 HOH HOH 106 C WAT 176 4 HOH HOH 107 C WAT 177 4 HOH HOH 108 C WAT 187 4 HOH HOH 109 C WAT 189 4 HOH HOH 110 C WAT 192 4 HOH HOH 111 C WAT 196 4 HOH HOH 112 C WAT 198 4 HOH HOH 113 C WAT 199 4 HOH HOH 114 C WAT 200 4 HOH HOH 115 C WAT 203 4 HOH HOH 116 C WAT 204 4 HOH HOH 117 C WAT 208 4 HOH HOH 118 C WAT 212 4 HOH HOH 119 C WAT 213 4 HOH HOH 120 C WAT 216 4 HOH HOH 121 C WAT 219 4 HOH HOH 122 C WAT 14 4 HOH HOH 39 D WAT 26 4 HOH HOH 40 D WAT 28 4 HOH HOH 41 D WAT 41 4 HOH HOH 42 D WAT 43 4 HOH HOH 43 D WAT 77 4 HOH HOH 44 D WAT 82 4 HOH HOH 45 D WAT 85 4 HOH HOH 46 D WAT 95 4 HOH HOH 47 D WAT 96 4 HOH HOH 48 D WAT 97 4 HOH HOH 49 D WAT 102 4 HOH HOH 50 D WAT 116 4 HOH HOH 51 D WAT 145 4 HOH HOH 52 D WAT 146 4 HOH HOH 53 D WAT 148 4 HOH HOH 54 D WAT 151 4 HOH HOH 55 D WAT 154 4 HOH HOH 56 D WAT 161 4 HOH HOH 57 D WAT 165 4 HOH HOH 58 D WAT 167 4 HOH HOH 59 D WAT 178 4 HOH HOH 60 D WAT 181 4 HOH HOH 61 D WAT 191 4 HOH HOH 62 D WAT 194 4 HOH HOH 63 D WAT 201 4 HOH HOH 64 D WAT 202 4 HOH HOH 65 D WAT 207 4 HOH HOH 66 D WAT 210 4 HOH HOH 67 D WAT 211 4 HOH HOH 68 D WAT 214 4 HOH HOH 69 D WAT 217 4 HOH HOH 70 D WAT 218 4 HOH HOH 71 D WAT 10 4 HOH HOH 131 A WAT 11 4 HOH HOH 132 A WAT 12 4 HOH HOH 133 A WAT 18 4 HOH HOH 134 A WAT 20 4 HOH HOH 135 A WAT 23 4 HOH HOH 136 A WAT 31 4 HOH HOH 137 A WAT 37 4 HOH HOH 138 A WAT 38 4 HOH HOH 139 A WAT 52 4 HOH HOH 140 A WAT 59 4 HOH HOH 141 A WAT 63 4 HOH HOH 142 A WAT 78 4 HOH HOH 143 A WAT 86 4 HOH HOH 144 A WAT 103 4 HOH HOH 145 A WAT 105 4 HOH HOH 146 A WAT 108 4 HOH HOH 147 A WAT 123 4 HOH HOH 148 A WAT 128 4 HOH HOH 149 A WAT 130 4 HOH HOH 150 A WAT 133 4 HOH HOH 151 A WAT 136 4 HOH HOH 152 A WAT 140 4 HOH HOH 153 A WAT 143 4 HOH HOH 154 A WAT 150 4 HOH HOH 155 A WAT 162 4 HOH HOH 156 A WAT 171 4 HOH HOH 157 A WAT 183 4 HOH HOH 158 A WAT 184 4 HOH HOH 159 A WAT 185 4 HOH HOH 160 A WAT 190 4 HOH HOH 161 A WAT 193 4 HOH HOH 162 A WAT 205 4 HOH HOH 163 A WAT 209 4 HOH HOH 164 A WAT 215 4 HOH HOH 165 A WAT 5 4 HOH HOH 133 B WAT 6 4 HOH HOH 134 B WAT 13 4 HOH HOH 135 B WAT 15 4 HOH HOH 136 B WAT 22 4 HOH HOH 137 B WAT 32 4 HOH HOH 138 B WAT 34 4 HOH HOH 139 B WAT 44 4 HOH HOH 140 B WAT 45 4 HOH HOH 141 B WAT 48 4 HOH HOH 142 B WAT 49 4 HOH HOH 143 B WAT 50 4 HOH HOH 144 B WAT 51 4 HOH HOH 145 B WAT 55 4 HOH HOH 146 B WAT 56 4 HOH HOH 147 B WAT 58 4 HOH HOH 148 B WAT 61 4 HOH HOH 149 B WAT 66 4 HOH HOH 150 B WAT 68 4 HOH HOH 151 B WAT 69 4 HOH HOH 152 B WAT 70 4 HOH HOH 153 B WAT 71 4 HOH HOH 154 B WAT 74 4 HOH HOH 155 B WAT 80 4 HOH HOH 156 B WAT 84 4 HOH HOH 157 B WAT 89 4 HOH HOH 158 B WAT 91 4 HOH HOH 159 B WAT 93 4 HOH HOH 160 B WAT 99 4 HOH HOH 161 B WAT 101 4 HOH HOH 162 B WAT 106 4 HOH HOH 163 B WAT 107 4 HOH HOH 164 B WAT 109 4 HOH HOH 165 B WAT 111 4 HOH HOH 166 B WAT 112 4 HOH HOH 167 B WAT 114 4 HOH HOH 168 B WAT 117 4 HOH HOH 169 B WAT 118 4 HOH HOH 170 B WAT 122 4 HOH HOH 171 B WAT 129 4 HOH HOH 172 B WAT 131 4 HOH HOH 173 B WAT 134 4 HOH HOH 174 B WAT 135 4 HOH HOH 175 B WAT 137 4 HOH HOH 176 B WAT 139 4 HOH HOH 177 B WAT 141 4 HOH HOH 178 B WAT 142 4 HOH HOH 179 B WAT 144 4 HOH HOH 180 B WAT 153 4 HOH HOH 181 B WAT 156 4 HOH HOH 182 B WAT 157 4 HOH HOH 183 B WAT 160 4 HOH HOH 184 B WAT 164 4 HOH HOH 185 B WAT 169 4 HOH HOH 186 B WAT 175 4 HOH HOH 187 B WAT 179 4 HOH HOH 188 B WAT 180 4 HOH HOH 189 B WAT 182 4 HOH HOH 190 B WAT 186 4 HOH HOH 191 B WAT 188 4 HOH HOH 192 B WAT 195 4 HOH HOH 193 B WAT 197 4 HOH HOH 194 B WAT 206 4 HOH HOH 195 B G 1 n 1 G 1 C G 2 n 2 G 2 C G 3 n 3 G 3 C C 4 n 4 C 4 C C 5 n 5 C 5 C C 6 n 6 C 6 C G 7 n 7 G 7 C G 8 n 8 G 8 C U 9 n 9 U 9 C A 10 n 10 A 10 C A 11 n 11 A 11 C G 12 n 12 G 12 C U 13 n 13 U 13 C C 14 n 14 C 14 C U 15 n 15 U 15 C C 16 n 16 C 16 C U 17 n 17 U 17 C U 18 n 18 U 18 C C 19 n 19 C 19 C G 20 n 20 G 20 C G 21 n 21 G 21 C A 22 n 22 A 22 C G 23 n 23 G 23 C A 24 n 24 A 24 C U 25 n 25 U 25 C A 26 n 26 A 26 C C 27 n 27 C 27 C U 28 n 28 U 28 C G 29 n 29 G 29 C C 30 n 30 C 30 C C 31 n 31 C 31 C G 32 n 32 G 32 C G 33 n 33 G 33 C G 34 n 34 G 34 C C 35 n 35 C 35 C C 36 n 36 C 36 C C 37 n 37 C 37 C G 1 n 1 G 1 D G 2 n 2 G 2 D G 3 n 3 G 3 D C 4 n 4 C 4 D C 5 n 5 C 5 D C 6 n 6 C 6 D G 7 n 7 G 7 D G 8 n 8 G 8 D U 9 n 9 U 9 D A 10 n 10 A 10 D A 11 n 11 A 11 D G 12 n 12 G 12 D U 13 n 13 U 13 D C 14 n 14 C 14 D U 15 n 15 U 15 D C 16 n 16 C 16 D U 17 n 17 U 17 D U 18 n 18 U 18 D C 19 n 19 C 19 D G 20 n 20 G 20 D G 21 n 21 G 21 D A 22 n 22 A 22 D G 23 n 23 G 23 D A 24 n 24 A 24 D U 25 n 25 U 25 D A 26 n 26 A 26 D C 27 n 27 C 27 D U 28 n 28 U 28 D G 29 n 29 G 29 D C 30 n 30 C 30 D C 31 n 31 C 31 D G 32 n 32 G 32 D G 33 n 33 G 33 D G 34 n 34 G 34 D C 35 n 35 C 35 D C 36 n 36 C 36 D C 37 n 37 C 37 D n 1 1 A SER 2 n 2 SER 2 A LEU 3 n 3 LEU 3 A MET 4 n 4 MET 4 A ASP 5 n 5 ASP 5 A PRO 6 n 6 PRO 6 A LEU 7 n 7 LEU 7 A ALA 8 n 8 ALA 8 A ASN 9 n 9 ASN 9 A ALA 10 n 10 ALA 10 A LEU 11 n 11 LEU 11 A ASN 12 n 12 ASN 12 A HIS 13 n 13 HIS 13 A ILE 14 n 14 ILE 14 A SER 15 n 15 SER 15 A ASN 16 n 16 ASN 16 A CYS 17 n 17 CYS 17 A GLU 18 n 18 GLU 18 A ARG 19 n 19 ARG 19 A VAL 20 n 20 VAL 20 A GLY 21 n 21 GLY 21 A LYS 22 n 22 LYS 22 A LYS 23 n 23 LYS 23 A VAL 24 n 24 VAL 24 A VAL 25 n 25 VAL 25 A TYR 26 n 26 TYR 26 A ILE 27 n 27 ILE 27 A LYS 28 n 28 LYS 28 A PRO 29 n 29 PRO 29 A ALA 30 n 30 ALA 30 A SER 31 n 31 SER 31 A LYS 32 n 32 LYS 32 A LEU 33 n 33 LEU 33 A ILE 34 n 34 ILE 34 A GLY 35 n 35 GLY 35 A ARG 36 n 36 ARG 36 A VAL 37 n 37 VAL 37 A LEU 38 n 38 LEU 38 A LYS 39 n 39 LYS 39 A VAL 40 n 40 VAL 40 A MSE 41 n 41 MSE 41 A GLN 42 n 42 GLN 42 A ASP 43 n 43 ASP 43 A ASN 44 n 44 ASN 44 A GLY 45 n 45 GLY 45 A TYR 46 n 46 TYR 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLU 49 n 49 GLU 49 A PHE 50 n 50 PHE 50 A GLU 51 n 51 GLU 51 A PHE 52 n 52 PHE 52 A ILE 53 n 53 ILE 53 A GLU 54 n 54 GLU 54 A ASP 55 n 55 ASP 55 A GLY 56 n 56 GLY 56 A ARG 57 n 57 ARG 57 A ALA 58 n 58 ALA 58 A GLY 59 n 59 GLY 59 A ILE 60 n 60 ILE 60 A PHE 61 n 61 PHE 61 A LYS 62 n 62 LYS 62 A VAL 63 n 63 VAL 63 A GLU 64 n 64 GLU 64 A LEU 65 n 65 LEU 65 A ILE 66 n 66 ILE 66 A GLY 67 n 67 GLY 67 A LYS 68 n 68 LYS 68 A ILE 69 n 69 ILE 69 A ASN 70 n 70 ASN 70 A LYS 71 n 71 LYS 71 A CYS 72 n 72 CYS 72 A GLY 73 n 73 GLY 73 A ALA 74 n 74 ALA 74 A ILE 75 n 75 ILE 75 A LYS 76 n 76 LYS 76 A PRO 77 n 77 PRO 77 A ARG 78 n 78 ARG 78 A PHE 79 n 79 PHE 79 A PRO 80 n 80 PRO 80 A VAL 81 n 81 VAL 81 A LYS 82 n 82 LYS 82 A LYS 83 n 83 LYS 83 A PHE 84 n 84 PHE 84 A GLY 85 n 85 GLY 85 A TYR 86 n 86 TYR 86 A GLU 87 n 87 GLU 87 A LYS 88 n 88 LYS 88 A PHE 89 n 89 PHE 89 A GLU 90 n 90 GLU 90 A LYS 91 n 91 LYS 91 A ARG 92 n 92 ARG 92 A TYR 93 n 93 TYR 93 A LEU 94 n 94 LEU 94 A PRO 95 n 95 PRO 95 A ALA 96 n 96 ALA 96 A ARG 97 n 97 ARG 97 A ASP 98 n 98 ASP 98 A PHE 99 n 99 PHE 99 A GLY 100 n 100 GLY 100 A ILE 101 n 101 ILE 101 A LEU 102 n 102 LEU 102 A ILE 103 n 103 ILE 103 A VAL 104 n 104 VAL 104 A SER 105 n 105 SER 105 A THR 106 n 106 THR 106 A THR 107 n 107 THR 107 A GLN 108 n 108 GLN 108 A GLY 109 n 109 GLY 109 A VAL 110 n 110 VAL 110 A MSE 111 n 111 MSE 111 A SER 112 n 112 SER 112 A HIS 113 n 113 HIS 113 A GLU 114 n 114 GLU 114 A GLU 115 n 115 GLU 115 A ALA 116 n 116 ALA 116 A LYS 117 n 117 LYS 117 A LYS 118 n 118 LYS 118 A ARG 119 n 119 ARG 119 A GLY 120 n 120 GLY 120 A LEU 121 n 121 LEU 121 A GLY 122 n 122 GLY 122 A GLY 123 n 123 GLY 123 A ARG 124 n 124 ARG 124 A LEU 125 n 125 LEU 125 A LEU 126 n 126 LEU 126 A ALA 127 n 127 ALA 127 A TYR 128 n 128 TYR 128 A VAL 129 n 129 VAL 129 A TYR 130 n 130 TYR 130 A n 1 1 B n 2 2 B n 3 3 B MET 4 n 4 MET 4 B ASP 5 n 5 ASP 5 B PRO 6 n 6 PRO 6 B LEU 7 n 7 LEU 7 B ALA 8 n 8 ALA 8 B ASN 9 n 9 ASN 9 B ALA 10 n 10 ALA 10 B LEU 11 n 11 LEU 11 B ASN 12 n 12 ASN 12 B HIS 13 n 13 HIS 13 B ILE 14 n 14 ILE 14 B SER 15 n 15 SER 15 B ASN 16 n 16 ASN 16 B CYS 17 n 17 CYS 17 B GLU 18 n 18 GLU 18 B ARG 19 n 19 ARG 19 B VAL 20 n 20 VAL 20 B GLY 21 n 21 GLY 21 B LYS 22 n 22 LYS 22 B LYS 23 n 23 LYS 23 B VAL 24 n 24 VAL 24 B VAL 25 n 25 VAL 25 B TYR 26 n 26 TYR 26 B ILE 27 n 27 ILE 27 B LYS 28 n 28 LYS 28 B PRO 29 n 29 PRO 29 B ALA 30 n 30 ALA 30 B SER 31 n 31 SER 31 B LYS 32 n 32 LYS 32 B LEU 33 n 33 LEU 33 B ILE 34 n 34 ILE 34 B GLY 35 n 35 GLY 35 B ARG 36 n 36 ARG 36 B VAL 37 n 37 VAL 37 B LEU 38 n 38 LEU 38 B LYS 39 n 39 LYS 39 B VAL 40 n 40 VAL 40 B MSE 41 n 41 MSE 41 B GLN 42 n 42 GLN 42 B ASP 43 n 43 ASP 43 B ASN 44 n 44 ASN 44 B GLY 45 n 45 GLY 45 B TYR 46 n 46 TYR 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLU 49 n 49 GLU 49 B PHE 50 n 50 PHE 50 B GLU 51 n 51 GLU 51 B PHE 52 n 52 PHE 52 B ILE 53 n 53 ILE 53 B GLU 54 n 54 GLU 54 B ASP 55 n 55 ASP 55 B GLY 56 n 56 GLY 56 B ARG 57 n 57 ARG 57 B ALA 58 n 58 ALA 58 B GLY 59 n 59 GLY 59 B ILE 60 n 60 ILE 60 B PHE 61 n 61 PHE 61 B LYS 62 n 62 LYS 62 B VAL 63 n 63 VAL 63 B GLU 64 n 64 GLU 64 B LEU 65 n 65 LEU 65 B ILE 66 n 66 ILE 66 B GLY 67 n 67 GLY 67 B LYS 68 n 68 LYS 68 B ILE 69 n 69 ILE 69 B ASN 70 n 70 ASN 70 B LYS 71 n 71 LYS 71 B CYS 72 n 72 CYS 72 B GLY 73 n 73 GLY 73 B ALA 74 n 74 ALA 74 B ILE 75 n 75 ILE 75 B LYS 76 n 76 LYS 76 B PRO 77 n 77 PRO 77 B ARG 78 n 78 ARG 78 B PHE 79 n 79 PHE 79 B PRO 80 n 80 PRO 80 B VAL 81 n 81 VAL 81 B LYS 82 n 82 LYS 82 B LYS 83 n 83 LYS 83 B PHE 84 n 84 PHE 84 B GLY 85 n 85 GLY 85 B TYR 86 n 86 TYR 86 B GLU 87 n 87 GLU 87 B LYS 88 n 88 LYS 88 B PHE 89 n 89 PHE 89 B GLU 90 n 90 GLU 90 B LYS 91 n 91 LYS 91 B ARG 92 n 92 ARG 92 B TYR 93 n 93 TYR 93 B LEU 94 n 94 LEU 94 B PRO 95 n 95 PRO 95 B ALA 96 n 96 ALA 96 B ARG 97 n 97 ARG 97 B ASP 98 n 98 ASP 98 B PHE 99 n 99 PHE 99 B GLY 100 n 100 GLY 100 B ILE 101 n 101 ILE 101 B LEU 102 n 102 LEU 102 B ILE 103 n 103 ILE 103 B VAL 104 n 104 VAL 104 B SER 105 n 105 SER 105 B THR 106 n 106 THR 106 B THR 107 n 107 THR 107 B GLN 108 n 108 GLN 108 B GLY 109 n 109 GLY 109 B VAL 110 n 110 VAL 110 B MSE 111 n 111 MSE 111 B SER 112 n 112 SER 112 B HIS 113 n 113 HIS 113 B GLU 114 n 114 GLU 114 B GLU 115 n 115 GLU 115 B ALA 116 n 116 ALA 116 B LYS 117 n 117 LYS 117 B LYS 118 n 118 LYS 118 B ARG 119 n 119 ARG 119 B GLY 120 n 120 GLY 120 B LEU 121 n 121 LEU 121 B GLY 122 n 122 GLY 122 B GLY 123 n 123 GLY 123 B ARG 124 n 124 ARG 124 B LEU 125 n 125 LEU 125 B LEU 126 n 126 LEU 126 B ALA 127 n 127 ALA 127 B TYR 128 n 128 TYR 128 B VAL 129 n 129 VAL 129 B TYR 130 n 130 TYR 130 B author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric A MSE 41 SELENOMETHIONINE C MSE 41 MET A MSE 111 SELENOMETHIONINE C MSE 111 MET B MSE 41 SELENOMETHIONINE D MSE 41 MET B MSE 111 SELENOMETHIONINE D MSE 111 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 27 C N ILE 27 A O PHE 61 C O PHE 61 A N LYS 62 C N LYS 62 A O GLU 51 C O GLU 51 A O MSE 111 C O MSE 111 A N VAL 104 C N VAL 104 A N SER 105 C N SER 105 A O ARG 124 C O ARG 124 A N TYR 128 C N TYR 128 A O GLY 73 C O GLY 73 A O MSE 111 C O MSE 111 A N VAL 104 C N VAL 104 A N SER 105 C N SER 105 A O ARG 124 C O ARG 124 A O GLY 123 C O GLY 123 A N VAL 81 C N VAL 81 B O ILE 27 D O ILE 27 B N PHE 61 D N PHE 61 B N LYS 62 D N LYS 62 B O GLU 51 D O GLU 51 B O MSE 111 D O MSE 111 B N VAL 104 D N VAL 104 B N SER 105 D N SER 105 B O ARG 124 D O ARG 124 B N TYR 128 D N TYR 128 B O GLY 73 D O GLY 73 B O MSE 111 D O MSE 111 B N VAL 104 D N VAL 104 B N SER 105 D N SER 105 B O ARG 124 D O ARG 124 B O GLY 123 D O GLY 123 B N VAL 81 D N VAL 81 1 A MET 1 C MET 1 1 Y 1 B MET 1 D MET 1 1 Y 1 B SER 2 D SER 2 1 Y 1 B LEU 3 D LEU 3 1 Y 1 C C P OP3 G G 1 1 -0.077 0.012 1.607 1.530 N 1 D D P OP3 G G 1 1 -0.084 0.012 1.607 1.523 N 1 A LYS 28 -64.87 -85.83 1 A ALA 30 -117.14 68.06 1 A ASP 43 -53.44 -9.92 1 A ARG 57 -108.12 -120.69 1 A LYS 71 170.09 146.22 1 A ASP 98 88.22 -5.91 1 B LYS 28 -71.82 -77.17 1 B PRO 29 -52.21 109.77 1 B ALA 30 -111.93 72.26 1 B ARG 57 -100.32 -122.26 1 B ARG 97 -25.89 -59.73 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 44.9 3.77 0.00 0.00 3.77 0.00 -7.54 0.2510000 0.007 0.2180000 0.2180000 2.60 41.07 1415 29396 29179 4.8 89.9 RANDOM 1361993.35 0.00 1 RESTRAINED THROUGHOUT 2.0 0 MAD Engh and Huber FLAT MODEL 33.43 0.344 0.41 0.35 5.00 0.44 0.38 2.60 41.07 215 3843 20 1580 2028 0.006 1.2 19.0 1.21 1.26 1.50 2.21 2.00 1.53 2.00 2.36 2.50 0.3790000 0.025 0.3430000 2.76 236 4253 6 5.3 84.8 64.3 2.57 41.07 1I6U 30271 30271 0 0 0.0450000 1,2,3 13.0 7.5 91.3 0.2490000 2.57 2.71 5.8 82.5 refinement CNS data reduction MOSFLM data scaling CCP4 (SCALA) phasing CNS 30S RIBOSOMAL PROTEIN S8P/RNA Complex RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N A ASP 5 C ASP 5 HELX_P A VAL 20 C VAL 20 1 1 16 A SER 31 C SER 31 HELX_P A ASN 44 C ASN 44 1 2 14 A TYR 86 C TYR 86 HELX_P A LEU 94 C LEU 94 1 3 9 A HIS 113 C HIS 113 HELX_P A ARG 119 C ARG 119 1 4 7 B ASP 5 D ASP 5 HELX_P B GLY 21 D GLY 21 1 5 17 B SER 31 D SER 31 HELX_P B ASN 44 D ASN 44 1 6 14 B TYR 86 D TYR 86 HELX_P B LEU 94 D LEU 94 1 7 9 B HIS 113 D HIS 113 HELX_P B ARG 119 D ARG 119 1 8 7 covale 1.330 A VAL 40 C C VAL 40 1_555 A MSE 41 C N MSE 41 1_555 covale 1.326 A MSE 41 C C MSE 41 1_555 A GLN 42 C N GLN 42 1_555 covale 1.327 A VAL 110 C C VAL 110 1_555 A MSE 111 C N MSE 111 1_555 covale 1.326 A MSE 111 C C MSE 111 1_555 A SER 112 C N SER 112 1_555 covale 1.328 B VAL 40 D C VAL 40 1_555 B MSE 41 D N MSE 41 1_555 covale 1.329 B MSE 41 D C MSE 41 1_555 B GLN 42 D N GLN 42 1_555 covale 1.332 B VAL 110 D C VAL 110 1_555 B MSE 111 D N MSE 111 1_555 covale 1.331 B MSE 111 D C MSE 111 1_555 B SER 112 D N SER 112 1_555 hydrog WATSON-CRICK C G 1 A N1 G 1 1_555 C C 37 A N3 C 37 1_555 hydrog WATSON-CRICK C G 1 A N2 G 1 1_555 C C 37 A O2 C 37 1_555 hydrog WATSON-CRICK C G 1 A O6 G 1 1_555 C C 37 A N4 C 37 1_555 hydrog WATSON-CRICK C G 2 A N1 G 2 1_555 C C 36 A N3 C 36 1_555 hydrog WATSON-CRICK C G 2 A N2 G 2 1_555 C C 36 A O2 C 36 1_555 hydrog WATSON-CRICK C G 2 A O6 G 2 1_555 C C 36 A N4 C 36 1_555 hydrog WATSON-CRICK C G 3 A N1 G 3 1_555 C C 35 A N3 C 35 1_555 hydrog WATSON-CRICK C G 3 A N2 G 3 1_555 C C 35 A O2 C 35 1_555 hydrog WATSON-CRICK C G 3 A O6 G 3 1_555 C C 35 A N4 C 35 1_555 hydrog WATSON-CRICK C C 4 A N3 C 4 1_555 C G 34 A N1 G 34 1_555 hydrog WATSON-CRICK C C 4 A N4 C 4 1_555 C G 34 A O6 G 34 1_555 hydrog WATSON-CRICK C C 4 A O2 C 4 1_555 C G 34 A N2 G 34 1_555 hydrog WATSON-CRICK C C 5 A N3 C 5 1_555 C G 33 A N1 G 33 1_555 hydrog WATSON-CRICK C C 5 A N4 C 5 1_555 C G 33 A O6 G 33 1_555 hydrog WATSON-CRICK C C 5 A O2 C 5 1_555 C G 33 A N2 G 33 1_555 hydrog WATSON-CRICK C C 6 A N3 C 6 1_555 C G 32 A N1 G 32 1_555 hydrog WATSON-CRICK C C 6 A N4 C 6 1_555 C G 32 A O6 G 32 1_555 hydrog WATSON-CRICK C C 6 A O2 C 6 1_555 C G 32 A N2 G 32 1_555 hydrog WATSON-CRICK C G 7 A N1 G 7 1_555 C C 31 A N3 C 31 1_555 hydrog WATSON-CRICK C G 7 A N2 G 7 1_555 C C 31 A O2 C 31 1_555 hydrog WATSON-CRICK C G 7 A O6 G 7 1_555 C C 31 A N4 C 31 1_555 hydrog WATSON-CRICK C G 8 A N1 G 8 1_555 C C 30 A N3 C 30 1_555 hydrog WATSON-CRICK C G 8 A N2 G 8 1_555 C C 30 A O2 C 30 1_555 hydrog WATSON-CRICK C G 8 A O6 G 8 1_555 C C 30 A N4 C 30 1_555 hydrog TYPE_28_PAIR C U 9 A N3 U 9 1_555 C G 29 A O6 G 29 1_555 hydrog TYPE_28_PAIR C U 9 A O2 U 9 1_555 C G 29 A N1 G 29 1_555 hydrog A-A MISPAIR C A 10 A N3 A 10 1_555 C A 11 A N6 A 11 1_555 hydrog WATSON-CRICK C A 11 A N1 A 11 1_555 C U 28 A N3 U 28 1_555 hydrog WATSON-CRICK C A 11 A N6 A 11 1_555 C U 28 A O4 U 28 1_555 hydrog WATSON-CRICK C G 12 A N1 G 12 1_555 C C 27 A N3 C 27 1_555 hydrog WATSON-CRICK C G 12 A N2 G 12 1_555 C C 27 A O2 C 27 1_555 hydrog WATSON-CRICK C G 12 A O6 G 12 1_555 C C 27 A N4 C 27 1_555 hydrog WATSON-CRICK C U 13 A N3 U 13 1_555 C A 24 A N1 A 24 1_555 hydrog WATSON-CRICK C U 13 A O4 U 13 1_555 C A 24 A N6 A 24 1_555 hydrog U-A PAIR C U 13 A O2 U 13 1_555 C A 26 A N6 A 26 1_555 hydrog WATSON-CRICK C C 14 A N3 C 14 1_555 C G 23 A N1 G 23 1_555 hydrog WATSON-CRICK C C 14 A N4 C 14 1_555 C G 23 A O6 G 23 1_555 hydrog WATSON-CRICK C C 14 A O2 C 14 1_555 C G 23 A N2 G 23 1_555 hydrog WATSON-CRICK C U 15 A N3 U 15 1_555 C A 22 A N1 A 22 1_555 hydrog WATSON-CRICK C U 15 A O4 U 15 1_555 C A 22 A N6 A 22 1_555 hydrog WATSON-CRICK C C 16 A N3 C 16 1_555 C G 21 A N1 G 21 1_555 hydrog WATSON-CRICK C C 16 A N4 C 16 1_555 C G 21 A O6 G 21 1_555 hydrog WATSON-CRICK C C 16 A O2 C 16 1_555 C G 21 A N2 G 21 1_555 hydrog U-G MISPAIR C U 17 A O2 U 17 1_555 C G 20 A N1 G 20 1_555 hydrog U-A PAIR C U 25 A O2 U 25 1_555 C A 26 A N6 A 26 1_555 hydrog U-C MISPAIR C U 25 A O2 U 25 1_555 C C 27 A N4 C 27 1_555 hydrog WATSON-CRICK D G 1 B N1 G 1 1_555 D C 37 B N3 C 37 1_555 hydrog WATSON-CRICK D G 1 B N2 G 1 1_555 D C 37 B O2 C 37 1_555 hydrog WATSON-CRICK D G 1 B O6 G 1 1_555 D C 37 B N4 C 37 1_555 hydrog WATSON-CRICK D G 2 B N1 G 2 1_555 D C 36 B N3 C 36 1_555 hydrog WATSON-CRICK D G 2 B N2 G 2 1_555 D C 36 B O2 C 36 1_555 hydrog WATSON-CRICK D G 2 B O6 G 2 1_555 D C 36 B N4 C 36 1_555 hydrog WATSON-CRICK D G 3 B N1 G 3 1_555 D C 35 B N3 C 35 1_555 hydrog WATSON-CRICK D G 3 B N2 G 3 1_555 D C 35 B O2 C 35 1_555 hydrog WATSON-CRICK D G 3 B O6 G 3 1_555 D C 35 B N4 C 35 1_555 hydrog WATSON-CRICK D C 4 B N3 C 4 1_555 D G 34 B N1 G 34 1_555 hydrog WATSON-CRICK D C 4 B N4 C 4 1_555 D G 34 B O6 G 34 1_555 hydrog WATSON-CRICK D C 4 B O2 C 4 1_555 D G 34 B N2 G 34 1_555 hydrog WATSON-CRICK D C 5 B N3 C 5 1_555 D G 33 B N1 G 33 1_555 hydrog WATSON-CRICK D C 5 B N4 C 5 1_555 D G 33 B O6 G 33 1_555 hydrog WATSON-CRICK D C 5 B O2 C 5 1_555 D G 33 B N2 G 33 1_555 hydrog WATSON-CRICK D C 6 B N3 C 6 1_555 D G 32 B N1 G 32 1_555 hydrog WATSON-CRICK D C 6 B N4 C 6 1_555 D G 32 B O6 G 32 1_555 hydrog WATSON-CRICK D C 6 B O2 C 6 1_555 D G 32 B N2 G 32 1_555 hydrog WATSON-CRICK D G 7 B N1 G 7 1_555 D C 31 B N3 C 31 1_555 hydrog WATSON-CRICK D G 7 B N2 G 7 1_555 D C 31 B O2 C 31 1_555 hydrog WATSON-CRICK D G 7 B O6 G 7 1_555 D C 31 B N4 C 31 1_555 hydrog WATSON-CRICK D G 8 B N1 G 8 1_555 D C 30 B N3 C 30 1_555 hydrog WATSON-CRICK D G 8 B N2 G 8 1_555 D C 30 B O2 C 30 1_555 hydrog WATSON-CRICK D G 8 B O6 G 8 1_555 D C 30 B N4 C 30 1_555 hydrog TYPE_28_PAIR D U 9 B N3 U 9 1_555 D G 29 B O6 G 29 1_555 hydrog TYPE_28_PAIR D U 9 B O2 U 9 1_555 D G 29 B N1 G 29 1_555 hydrog A-A MISPAIR D A 10 B N3 A 10 1_555 D A 11 B N6 A 11 1_555 hydrog WATSON-CRICK D A 11 B N1 A 11 1_555 D U 28 B N3 U 28 1_555 hydrog WATSON-CRICK D A 11 B N6 A 11 1_555 D U 28 B O4 U 28 1_555 hydrog WATSON-CRICK D G 12 B N1 G 12 1_555 D C 27 B N3 C 27 1_555 hydrog WATSON-CRICK D G 12 B N2 G 12 1_555 D C 27 B O2 C 27 1_555 hydrog WATSON-CRICK D G 12 B O6 G 12 1_555 D C 27 B N4 C 27 1_555 hydrog WATSON-CRICK D U 13 B N3 U 13 1_555 D A 24 B N1 A 24 1_555 hydrog WATSON-CRICK D U 13 B O4 U 13 1_555 D A 24 B N6 A 24 1_555 hydrog U-A PAIR D U 13 B O2 U 13 1_555 D A 26 B N6 A 26 1_555 hydrog WATSON-CRICK D C 14 B N3 C 14 1_555 D G 23 B N1 G 23 1_555 hydrog WATSON-CRICK D C 14 B N4 C 14 1_555 D G 23 B O6 G 23 1_555 hydrog WATSON-CRICK D C 14 B O2 C 14 1_555 D G 23 B N2 G 23 1_555 hydrog WATSON-CRICK D U 15 B N3 U 15 1_555 D A 22 B N1 A 22 1_555 hydrog WATSON-CRICK D U 15 B O4 U 15 1_555 D A 22 B N6 A 22 1_555 hydrog WATSON-CRICK D C 16 B N3 C 16 1_555 D G 21 B N1 G 21 1_555 hydrog WATSON-CRICK D C 16 B N4 C 16 1_555 D G 21 B O6 G 21 1_555 hydrog WATSON-CRICK D C 16 B O2 C 16 1_555 D G 21 B N2 G 21 1_555 hydrog U-G MISPAIR D U 17 B O2 U 17 1_555 D G 20 B N1 G 20 1_555 hydrog U-A PAIR D U 25 B O2 U 25 1_555 D A 26 B N6 A 26 1_555 hydrog U-C MISPAIR D U 25 B O2 U 25 1_555 D C 27 B N4 C 27 1_555 RIBOSOME protein-RNA interactions, ribosome, ribosomal protein S8, RNA A LYS 76 C LYS 76 1 A PRO 77 C PRO 77 -0.27 B LYS 76 D LYS 76 1 B PRO 77 D PRO 77 -0.03 RS8_METJA UNP 2 1 P54041 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 1I6U PDB 1 1I6U 1 130 1I6U 1 130 P54041 A 1 1 130 1 130 1I6U 1 130 P54041 B 1 1 130 1 37 1I6U 1 37 1I6U C 2 1 37 1 37 1I6U 1 37 1I6U D 2 1 37 1 MET MODIFIED RESIDUE MSE 41 1I6U A P54041 UNP 41 41 1 MET MODIFIED RESIDUE MSE 111 1I6U A P54041 UNP 111 111 2 MET MODIFIED RESIDUE MSE 41 1I6U B P54041 UNP 41 41 2 MET MODIFIED RESIDUE MSE 111 1I6U B P54041 UNP 111 111 3 4 4 3 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 24 C VAL 24 A ILE 27 C ILE 27 A ILE 60 C ILE 60 A GLU 64 C GLU 64 A PHE 50 C PHE 50 A ILE 53 C ILE 53 A GLY 109 C GLY 109 A SER 112 C SER 112 A ILE 101 C ILE 101 A THR 106 C THR 106 A GLY 123 C GLY 123 A VAL 129 C VAL 129 A CYS 72 C CYS 72 A ALA 74 C ALA 74 A GLY 109 C GLY 109 A SER 112 C SER 112 A ILE 101 C ILE 101 A THR 106 C THR 106 A GLY 123 C GLY 123 A VAL 129 C VAL 129 A PRO 80 C PRO 80 A VAL 81 C VAL 81 B VAL 24 D VAL 24 B ILE 27 D ILE 27 B ILE 60 D ILE 60 B GLU 64 D GLU 64 B PHE 50 D PHE 50 B ILE 53 D ILE 53 B GLY 109 D GLY 109 B SER 112 D SER 112 B ILE 101 D ILE 101 B THR 106 D THR 106 B GLY 123 D GLY 123 B VAL 129 D VAL 129 B CYS 72 D CYS 72 B ALA 74 D ALA 74 B GLY 109 D GLY 109 B SER 112 D SER 112 B ILE 101 D ILE 101 B THR 106 D THR 106 B GLY 123 D GLY 123 B VAL 129 D VAL 129 B PRO 80 D PRO 80 B VAL 81 D VAL 81 BINDING SITE FOR RESIDUE SO4 B 131 Software 5 BINDING SITE FOR RESIDUE SO4 B 132 Software 6 BINDING SITE FOR RESIDUE SO4 D 38 Software 7 BINDING SITE FOR RESIDUE SO4 C 38 Software 7 A ARG 124 C ARG 124 5 1_555 B ARG 97 D ARG 97 5 1_555 B HOH 158 L HOH 5 1_555 B HOH 165 L HOH 5 1_555 C G 12 A G 12 5 1_555 B PHE 79 D PHE 79 6 8_665 B ARG 92 D ARG 92 6 8_665 B ARG 124 D ARG 124 6 1_555 B HOH 144 L HOH 6 1_555 B HOH 179 L HOH 6 1_555 D G 12 B G 12 6 1_555 B THR 107 D THR 107 7 1_555 B GLN 108 D GLN 108 7 1_555 B LEU 121 D LEU 121 7 1_555 D U 15 B U 15 7 1_555 D G 23 B G 23 7 1_555 D A 24 B A 24 7 1_555 D HOH 51 J HOH 7 1_555 A THR 107 C THR 107 7 1_555 A GLN 108 C GLN 108 7 1_555 A LEU 121 C LEU 121 7 1_555 C G 23 A G 23 7 1_555 C A 24 A A 24 7 1_555 C HOH 91 I HOH 7 1_555 C HOH 100 I HOH 7 1_555 96 P 43 21 2