0.008218
0.000000
0.000000
0.000000
0.008218
0.000000
0.000000
0.000000
0.007248
0.00000
0.00000
0.00000
Tishchenko, S.
Nikulin, A.
Fomenkova, N.
Nevskaya, N.
Nikonov, O.
Dumas, P.
Moine, H.
Ehresmann, B.
Ehresmann, C.
Piendl, W.
Lamzin, V.
Garber, M.
Nikonov, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
121.687
121.687
137.975
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
311
324
10.1006/jmbi.2001.4877
11478863
Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
2001
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
279
233
244
10.1006/jmbi.1998.1758
Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site.
1998
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
280
639
654
10.1006/jmbi.1998.1915
NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA
1998
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
110
1
110
1
IMAGE PLATE
2000-05-17
MARRESEARCH
IMAGE PLATE
2000-06-20
MARRESEARCH
CCD
2000-06-25
MARRESEARCH
Si(111)
MAD
M
x-ray
1
Si(111)
MAD
M
x-ray
1
Double crystal focussing monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97624
1.0
0.97933
1.0
0.97948
1.0
0.97949
1.0
0.97921
1.0
0.97435
1.0
0.91
1.0
BM30A
ESRF
0.97624,0.97933,0.97948
SYNCHROTRON
ESRF BEAMLINE BM30A
BM30A
ESRF
0.97949,0.97921,0.97435
SYNCHROTRON
ESRF BEAMLINE BM30A
X11
EMBL/DESY, Hamburg
0.91
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
11894.089
16S RRNA FRAGMENT
2
syn
polymer
14744.127
30S RIBOSOMAL PROTEIN S8P
2
man
polymer
96.063
SULFATE ION
4
syn
non-polymer
18.015
water
215
nat
water
no
no
GGGCCCGGUAAGUCUCUUCGGAGAUACUGCCGGGCCC
GGGCCCGGUAAGUCUCUUCGGAGAUACUGCCGGGCCC
C,D
polyribonucleotide
no
yes
MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKV(MSE)QDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIK
PRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGV(MSE)SHEEAKKRGLGGRLLAYVY
MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP
VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Methanocaldococcus
Escherichia
sample
MJAS8
2190
Methanocaldococcus jannaschii
562
Escherichia coli
B834(DE3)
PLASMID
PET11A
1
4.79
74.34
VAPOR DIFFUSION, HANGING DROP
6.5
ammonium sulphate, sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
ammonium sulphate
1
sodium cacodylate
1
-8.183
1
19
C
1
C
37
0.252
C_G1:C37_C
1
-2.050
-0.272
-0.102
-0.067
-2.367
1
19
C
2
C
36
0.194
C_G2:C36_C
2
-6.632
-0.164
0.108
-0.123
-1.946
1
19
C
3
C
35
3.997
C_G3:C35_C
3
-5.116
-0.315
0.108
-0.070
5.558
1
19
C
4
C
34
0.056
C_C4:G34_C
4
-6.259
0.173
-0.045
-0.122
2.479
1
19
C
5
C
33
-1.580
C_C5:G33_C
5
-6.796
0.158
0.207
-0.150
4.384
1
19
C
6
C
32
1.814
C_C6:G32_C
6
-9.964
0.093
-0.263
-0.058
-1.664
1
19
C
7
C
31
1.328
C_G7:C31_C
7
-12.916
-0.243
-0.126
-0.152
-11.624
1
19
C
8
C
30
0.763
C_G8:C30_C
8
-14.445
-0.261
-0.135
-0.157
-18.880
28
C
9
C
29
-4.254
C_U9:G29_C
9
-7.986
2.382
0.253
-0.524
-4.246
1
20
C
11
C
28
4.391
C_A11:U28_C
10
-3.035
-0.053
-0.073
-0.140
-20.361
1
19
C
12
C
27
0.512
C_G12:C27_C
11
-21.195
-0.119
-0.465
-0.093
-27.948
9
C
25
C
26
2.322
C_U25:A26_C
12
6.062
6.623
1.992
-0.025
14.686
1
20
C
13
C
24
-5.387
C_U13:A24_C
13
-21.153
0.143
-0.126
0.009
8.447
1
19
C
14
C
23
-0.080
C_C14:G23_C
14
-14.169
0.130
-0.141
-0.121
3.453
1
20
C
15
C
22
-3.133
C_U15:A22_C
15
-13.299
0.079
0.115
-0.142
9.534
1
19
C
16
C
21
-2.088
C_C16:G21_C
16
-14.810
0.260
-0.287
-0.090
-13.677
C
17
C
20
-108.792
C_U17:G20_C
17
-18.230
1.038
-0.141
-4.964
-8.080
1
19
D
1
D
37
-1.192
D_G1:C37_D
18
-3.200
-0.174
-0.347
-0.061
2.850
1
19
D
2
D
36
-0.879
D_G2:C36_D
19
-5.887
-0.172
0.383
-0.165
-1.144
1
19
D
3
D
35
0.206
D_G3:C35_D
20
-7.438
-0.274
0.064
-0.109
1.711
1
19
D
4
D
34
0.402
D_C4:G34_D
21
-5.185
0.158
0.024
-0.071
-0.718
1
19
D
5
D
33
-0.672
D_C5:G33_D
22
-4.405
-0.002
0.329
-0.111
-2.033
1
19
D
6
D
32
-0.410
D_C6:G32_D
23
-6.167
0.109
0.316
-0.074
0.679
1
19
D
7
D
31
2.413
D_G7:C31_D
24
-5.896
-0.164
0.010
-0.102
-16.216
1
19
D
8
D
30
0.187
D_G8:C30_D
25
-17.495
-0.247
-0.352
-0.071
-13.594
28
D
9
D
29
-3.297
D_U9:G29_D
26
-15.184
2.311
-0.049
-0.500
-4.158
1
20
D
11
D
28
-1.141
D_A11:U28_D
27
-9.979
-0.081
-0.453
-0.147
-15.673
1
19
D
12
D
27
1.224
D_G12:C27_D
28
-22.639
-0.246
-0.429
-0.184
-29.488
9
D
25
D
26
2.422
D_U25:A26_D
29
10.633
6.896
2.127
-0.172
23.179
1
20
D
13
D
24
-2.517
D_U13:A24_D
30
-17.320
-0.184
-0.403
0.120
10.581
1
19
D
14
D
23
-0.981
D_C14:G23_D
31
-12.202
0.113
-0.022
-0.086
10.672
1
20
D
15
D
22
1.820
D_U15:A22_D
32
-12.054
-0.005
-0.316
-0.092
2.826
1
19
D
16
D
21
3.758
D_C16:G21_D
33
-7.083
0.185
0.014
-0.058
-11.072
2
D
17
D
20
-104.598
D_U17:G20_D
34
-4.159
0.996
0.063
-5.195
2.833
30.096
C
C
1
2
7.901
C
C
37
36
3.115
4.091
0.040
-1.911
CC_G1G2:C36C37_CC
1
-0.275
0.531
29.822
-4.444
-0.129
2.982
30.969
C
C
2
3
4.854
C
C
36
35
3.117
2.587
0.719
-1.986
CC_G2G3:C35C36_CC
2
1.917
-3.596
30.805
-4.187
-1.001
2.713
30.411
C
C
3
4
8.875
C
C
35
34
3.029
4.637
-1.061
-2.168
CC_G3C4:G34C35_CC
3
-1.261
2.414
30.038
-4.953
1.800
2.549
31.019
C
C
4
5
15.044
C
C
34
33
3.218
7.944
-0.024
-2.197
CC_C4C5:G33G34_CC
4
-3.425
6.487
29.816
-5.484
-0.549
2.820
29.105
C
C
5
6
6.851
C
C
33
32
3.093
3.435
-0.668
-2.116
CC_C5C6:G32G33_CC
5
0.369
-0.736
28.904
-4.892
1.402
2.665
29.069
C
C
6
7
19.399
C
C
32
31
3.415
9.555
-0.132
-1.764
CC_C6G7:C31G32_CC
6
-2.081
4.225
27.409
-5.523
-0.174
2.860
33.777
C
C
7
8
14.444
C
C
31
30
3.422
8.311
0.597
-1.932
CC_G7G8:C30C31_CC
7
-0.049
0.084
32.768
-4.637
-1.035
3.218
43.977
C
C
8
9
8.613
C
C
30
29
3.493
6.425
0.024
-1.694
CC_G8U9:G29C30_CC
8
2.929
-3.927
43.434
-2.889
0.254
1.965
45.542
C
C
9
11
9.440
C
C
29
28
2.825
7.226
-2.523
-1.601
CC_U9A11:U28G29_CC
9
9.948
-12.996
43.937
-2.543
3.913
2.945
32.706
C
C
11
12
17.950
C
C
28
27
3.743
9.909
0.086
-2.004
CC_A11G12:C27U28_CC
10
5.482
-9.931
30.733
-5.369
0.848
-2.130
-179.948
C
C
12
25
-31.037
C
C
27
26
-2.128
62.075
-0.307
2.236
CC_G12U25:A26C27_CC
11
155.922
77.961
-179.514
-1.116
-0.157
2.398
155.782
C
C
25
13
-17.733
C
C
26
24
0.728
-32.489
1.889
-2.368
CC_U25U13:A24A26_CC
12
148.585
-81.100
59.083
-1.015
-0.070
2.953
33.974
C
C
13
14
13.724
C
C
24
23
3.370
7.939
-0.303
-1.506
CC_U13C14:G23A24_CC
13
-2.912
5.033
32.935
-3.826
0.061
3.110
33.794
C
C
14
15
9.236
C
C
23
22
3.384
5.345
-0.263
-1.579
CC_C14U15:A22G23_CC
14
-1.903
3.288
33.328
-3.580
0.144
3.035
34.092
C
C
15
16
4.875
C
C
22
21
3.115
2.844
0.523
-1.386
CC_U15C16:G21A22_CC
15
5.376
-9.216
33.561
-2.793
-0.083
3.284
97.480
C
C
16
17
4.558
C
C
21
20
3.398
6.845
-0.954
-0.781
CC_C16U17:G20G21_CC
16
8.333
-5.549
97.033
-0.636
0.777
2.638
28.862
D
D
1
2
7.004
D
D
37
36
2.938
3.468
-0.015
-2.077
DD_G1G2:C36C37_DD
17
-4.683
9.458
28.280
-4.833
-0.867
2.533
33.634
D
D
2
3
16.004
D
D
36
35
3.155
9.134
-0.005
-1.863
DD_G2G3:C35C36_DD
18
3.482
-6.101
32.221
-4.547
0.514
2.813
33.538
D
D
3
4
10.325
D
D
35
34
3.103
5.928
0.102
-1.428
DD_G3C4:G34C35_DD
19
0.363
-0.633
33.023
-3.363
-0.123
2.878
30.039
D
D
4
5
9.375
D
D
34
33
3.247
4.831
-0.030
-2.009
DD_C4C5:G33G34_DD
20
-2.948
5.721
29.513
-4.814
-0.515
2.850
33.682
D
D
5
6
6.899
D
D
33
32
3.073
3.986
-0.528
-2.018
DD_C5C6:G32G33_DD
21
-2.344
4.057
33.372
-4.072
0.565
2.392
29.742
D
D
6
7
15.746
D
D
32
31
3.023
7.987
-0.054
-1.994
DD_C6G7:C31G32_DD
22
0.205
-0.405
28.672
-5.296
0.142
2.842
34.911
D
D
7
8
19.984
D
D
31
30
3.653
11.766
0.204
-1.874
DD_G7G8:C30C31_DD
23
1.229
-2.087
32.905
-4.948
-0.150
3.290
43.309
D
D
8
9
1.499
D
D
30
29
3.336
1.106
-0.234
-1.507
DD_G8U9:G29C30_DD
24
1.392
-1.887
43.274
-2.152
0.455
1.949
47.173
D
D
9
11
12.822
D
D
29
28
3.143
10.070
-2.692
-1.568
DD_U9A11:U28G29_DD
25
12.932
-16.467
44.388
-2.623
4.215
2.914
33.131
D
D
11
12
18.744
D
D
28
27
3.696
10.499
0.375
-2.003
DD_A11G12:C27U28_DD
26
3.006
-5.367
31.327
-5.352
-0.132
-2.364
-177.670
D
D
12
25
-29.878
D
D
27
26
-2.220
59.677
0.173
2.269
DD_G12U25:A26C27_DD
27
156.899
78.554
-157.822
-1.056
-0.121
2.505
159.686
D
D
25
13
-18.483
D
D
26
24
0.778
-34.289
1.981
-2.240
DD_U25U13:A24A26_DD
28
153.302
-82.633
54.769
-0.919
-0.026
2.938
38.263
D
D
13
14
16.571
D
D
24
23
3.529
10.661
-0.479
-1.802
DD_U13C14:G23A24_DD
29
-7.457
11.591
36.061
-4.116
-0.225
2.604
28.465
D
D
14
15
14.609
D
D
23
22
3.161
7.103
-0.731
-2.082
DD_C14U15:A22G23_DD
30
-2.312
4.755
27.487
-5.693
1.011
3.086
35.985
D
D
15
16
8.726
D
D
22
21
3.457
5.361
0.508
-1.788
DD_U15C16:G21A22_DD
31
-4.085
6.648
35.369
-3.664
-1.409
3.311
95.974
D
D
16
17
3.521
D
D
21
20
3.458
5.227
-1.394
-0.884
DD_C16U17:G20G21_DD
32
9.025
-6.080
95.544
-0.689
1.101
repository
Initial release
Version format compliance
Version format compliance
1
0
2001-08-03
1
1
2008-04-27
1
2
2011-07-13
The NMR structure of S8 16S rRNA binding site from E. Coli
RCSB
Y
RCSB
2001-03-05
REL
REL
SO4
SULFATE ION
HOH
water
The rRNA fragment was obtained by transcription from synthetic DNA template using T7 RNA polymerase.
sample
SO4
4
3
SO4
SO4
38
C
SO4
3
3
SO4
SO4
38
D
SO4
1
3
SO4
SO4
131
B
SO4
2
3
SO4
SO4
132
B
WAT
7
4
HOH
HOH
39
C
WAT
8
4
HOH
HOH
40
C
WAT
9
4
HOH
HOH
41
C
WAT
16
4
HOH
HOH
42
C
WAT
17
4
HOH
HOH
43
C
WAT
19
4
HOH
HOH
44
C
WAT
21
4
HOH
HOH
45
C
WAT
24
4
HOH
HOH
46
C
WAT
25
4
HOH
HOH
47
C
WAT
27
4
HOH
HOH
48
C
WAT
29
4
HOH
HOH
49
C
WAT
30
4
HOH
HOH
50
C
WAT
33
4
HOH
HOH
51
C
WAT
35
4
HOH
HOH
52
C
WAT
36
4
HOH
HOH
53
C
WAT
39
4
HOH
HOH
54
C
WAT
40
4
HOH
HOH
55
C
WAT
42
4
HOH
HOH
56
C
WAT
46
4
HOH
HOH
57
C
WAT
47
4
HOH
HOH
58
C
WAT
53
4
HOH
HOH
59
C
WAT
54
4
HOH
HOH
60
C
WAT
57
4
HOH
HOH
61
C
WAT
60
4
HOH
HOH
62
C
WAT
62
4
HOH
HOH
63
C
WAT
64
4
HOH
HOH
64
C
WAT
65
4
HOH
HOH
65
C
WAT
67
4
HOH
HOH
66
C
WAT
72
4
HOH
HOH
67
C
WAT
73
4
HOH
HOH
68
C
WAT
75
4
HOH
HOH
69
C
WAT
76
4
HOH
HOH
70
C
WAT
79
4
HOH
HOH
71
C
WAT
81
4
HOH
HOH
72
C
WAT
83
4
HOH
HOH
73
C
WAT
87
4
HOH
HOH
74
C
WAT
88
4
HOH
HOH
75
C
WAT
90
4
HOH
HOH
76
C
WAT
92
4
HOH
HOH
77
C
WAT
94
4
HOH
HOH
78
C
WAT
98
4
HOH
HOH
79
C
WAT
100
4
HOH
HOH
80
C
WAT
104
4
HOH
HOH
81
C
WAT
110
4
HOH
HOH
82
C
WAT
113
4
HOH
HOH
83
C
WAT
115
4
HOH
HOH
84
C
WAT
119
4
HOH
HOH
85
C
WAT
120
4
HOH
HOH
86
C
WAT
121
4
HOH
HOH
87
C
WAT
124
4
HOH
HOH
88
C
WAT
125
4
HOH
HOH
89
C
WAT
126
4
HOH
HOH
90
C
WAT
127
4
HOH
HOH
91
C
WAT
132
4
HOH
HOH
92
C
WAT
138
4
HOH
HOH
93
C
WAT
147
4
HOH
HOH
94
C
WAT
149
4
HOH
HOH
95
C
WAT
152
4
HOH
HOH
96
C
WAT
155
4
HOH
HOH
97
C
WAT
158
4
HOH
HOH
98
C
WAT
159
4
HOH
HOH
99
C
WAT
163
4
HOH
HOH
100
C
WAT
166
4
HOH
HOH
101
C
WAT
168
4
HOH
HOH
102
C
WAT
170
4
HOH
HOH
103
C
WAT
172
4
HOH
HOH
104
C
WAT
173
4
HOH
HOH
105
C
WAT
174
4
HOH
HOH
106
C
WAT
176
4
HOH
HOH
107
C
WAT
177
4
HOH
HOH
108
C
WAT
187
4
HOH
HOH
109
C
WAT
189
4
HOH
HOH
110
C
WAT
192
4
HOH
HOH
111
C
WAT
196
4
HOH
HOH
112
C
WAT
198
4
HOH
HOH
113
C
WAT
199
4
HOH
HOH
114
C
WAT
200
4
HOH
HOH
115
C
WAT
203
4
HOH
HOH
116
C
WAT
204
4
HOH
HOH
117
C
WAT
208
4
HOH
HOH
118
C
WAT
212
4
HOH
HOH
119
C
WAT
213
4
HOH
HOH
120
C
WAT
216
4
HOH
HOH
121
C
WAT
219
4
HOH
HOH
122
C
WAT
14
4
HOH
HOH
39
D
WAT
26
4
HOH
HOH
40
D
WAT
28
4
HOH
HOH
41
D
WAT
41
4
HOH
HOH
42
D
WAT
43
4
HOH
HOH
43
D
WAT
77
4
HOH
HOH
44
D
WAT
82
4
HOH
HOH
45
D
WAT
85
4
HOH
HOH
46
D
WAT
95
4
HOH
HOH
47
D
WAT
96
4
HOH
HOH
48
D
WAT
97
4
HOH
HOH
49
D
WAT
102
4
HOH
HOH
50
D
WAT
116
4
HOH
HOH
51
D
WAT
145
4
HOH
HOH
52
D
WAT
146
4
HOH
HOH
53
D
WAT
148
4
HOH
HOH
54
D
WAT
151
4
HOH
HOH
55
D
WAT
154
4
HOH
HOH
56
D
WAT
161
4
HOH
HOH
57
D
WAT
165
4
HOH
HOH
58
D
WAT
167
4
HOH
HOH
59
D
WAT
178
4
HOH
HOH
60
D
WAT
181
4
HOH
HOH
61
D
WAT
191
4
HOH
HOH
62
D
WAT
194
4
HOH
HOH
63
D
WAT
201
4
HOH
HOH
64
D
WAT
202
4
HOH
HOH
65
D
WAT
207
4
HOH
HOH
66
D
WAT
210
4
HOH
HOH
67
D
WAT
211
4
HOH
HOH
68
D
WAT
214
4
HOH
HOH
69
D
WAT
217
4
HOH
HOH
70
D
WAT
218
4
HOH
HOH
71
D
WAT
10
4
HOH
HOH
131
A
WAT
11
4
HOH
HOH
132
A
WAT
12
4
HOH
HOH
133
A
WAT
18
4
HOH
HOH
134
A
WAT
20
4
HOH
HOH
135
A
WAT
23
4
HOH
HOH
136
A
WAT
31
4
HOH
HOH
137
A
WAT
37
4
HOH
HOH
138
A
WAT
38
4
HOH
HOH
139
A
WAT
52
4
HOH
HOH
140
A
WAT
59
4
HOH
HOH
141
A
WAT
63
4
HOH
HOH
142
A
WAT
78
4
HOH
HOH
143
A
WAT
86
4
HOH
HOH
144
A
WAT
103
4
HOH
HOH
145
A
WAT
105
4
HOH
HOH
146
A
WAT
108
4
HOH
HOH
147
A
WAT
123
4
HOH
HOH
148
A
WAT
128
4
HOH
HOH
149
A
WAT
130
4
HOH
HOH
150
A
WAT
133
4
HOH
HOH
151
A
WAT
136
4
HOH
HOH
152
A
WAT
140
4
HOH
HOH
153
A
WAT
143
4
HOH
HOH
154
A
WAT
150
4
HOH
HOH
155
A
WAT
162
4
HOH
HOH
156
A
WAT
171
4
HOH
HOH
157
A
WAT
183
4
HOH
HOH
158
A
WAT
184
4
HOH
HOH
159
A
WAT
185
4
HOH
HOH
160
A
WAT
190
4
HOH
HOH
161
A
WAT
193
4
HOH
HOH
162
A
WAT
205
4
HOH
HOH
163
A
WAT
209
4
HOH
HOH
164
A
WAT
215
4
HOH
HOH
165
A
WAT
5
4
HOH
HOH
133
B
WAT
6
4
HOH
HOH
134
B
WAT
13
4
HOH
HOH
135
B
WAT
15
4
HOH
HOH
136
B
WAT
22
4
HOH
HOH
137
B
WAT
32
4
HOH
HOH
138
B
WAT
34
4
HOH
HOH
139
B
WAT
44
4
HOH
HOH
140
B
WAT
45
4
HOH
HOH
141
B
WAT
48
4
HOH
HOH
142
B
WAT
49
4
HOH
HOH
143
B
WAT
50
4
HOH
HOH
144
B
WAT
51
4
HOH
HOH
145
B
WAT
55
4
HOH
HOH
146
B
WAT
56
4
HOH
HOH
147
B
WAT
58
4
HOH
HOH
148
B
WAT
61
4
HOH
HOH
149
B
WAT
66
4
HOH
HOH
150
B
WAT
68
4
HOH
HOH
151
B
WAT
69
4
HOH
HOH
152
B
WAT
70
4
HOH
HOH
153
B
WAT
71
4
HOH
HOH
154
B
WAT
74
4
HOH
HOH
155
B
WAT
80
4
HOH
HOH
156
B
WAT
84
4
HOH
HOH
157
B
WAT
89
4
HOH
HOH
158
B
WAT
91
4
HOH
HOH
159
B
WAT
93
4
HOH
HOH
160
B
WAT
99
4
HOH
HOH
161
B
WAT
101
4
HOH
HOH
162
B
WAT
106
4
HOH
HOH
163
B
WAT
107
4
HOH
HOH
164
B
WAT
109
4
HOH
HOH
165
B
WAT
111
4
HOH
HOH
166
B
WAT
112
4
HOH
HOH
167
B
WAT
114
4
HOH
HOH
168
B
WAT
117
4
HOH
HOH
169
B
WAT
118
4
HOH
HOH
170
B
WAT
122
4
HOH
HOH
171
B
WAT
129
4
HOH
HOH
172
B
WAT
131
4
HOH
HOH
173
B
WAT
134
4
HOH
HOH
174
B
WAT
135
4
HOH
HOH
175
B
WAT
137
4
HOH
HOH
176
B
WAT
139
4
HOH
HOH
177
B
WAT
141
4
HOH
HOH
178
B
WAT
142
4
HOH
HOH
179
B
WAT
144
4
HOH
HOH
180
B
WAT
153
4
HOH
HOH
181
B
WAT
156
4
HOH
HOH
182
B
WAT
157
4
HOH
HOH
183
B
WAT
160
4
HOH
HOH
184
B
WAT
164
4
HOH
HOH
185
B
WAT
169
4
HOH
HOH
186
B
WAT
175
4
HOH
HOH
187
B
WAT
179
4
HOH
HOH
188
B
WAT
180
4
HOH
HOH
189
B
WAT
182
4
HOH
HOH
190
B
WAT
186
4
HOH
HOH
191
B
WAT
188
4
HOH
HOH
192
B
WAT
195
4
HOH
HOH
193
B
WAT
197
4
HOH
HOH
194
B
WAT
206
4
HOH
HOH
195
B
G
1
n
1
G
1
C
G
2
n
2
G
2
C
G
3
n
3
G
3
C
C
4
n
4
C
4
C
C
5
n
5
C
5
C
C
6
n
6
C
6
C
G
7
n
7
G
7
C
G
8
n
8
G
8
C
U
9
n
9
U
9
C
A
10
n
10
A
10
C
A
11
n
11
A
11
C
G
12
n
12
G
12
C
U
13
n
13
U
13
C
C
14
n
14
C
14
C
U
15
n
15
U
15
C
C
16
n
16
C
16
C
U
17
n
17
U
17
C
U
18
n
18
U
18
C
C
19
n
19
C
19
C
G
20
n
20
G
20
C
G
21
n
21
G
21
C
A
22
n
22
A
22
C
G
23
n
23
G
23
C
A
24
n
24
A
24
C
U
25
n
25
U
25
C
A
26
n
26
A
26
C
C
27
n
27
C
27
C
U
28
n
28
U
28
C
G
29
n
29
G
29
C
C
30
n
30
C
30
C
C
31
n
31
C
31
C
G
32
n
32
G
32
C
G
33
n
33
G
33
C
G
34
n
34
G
34
C
C
35
n
35
C
35
C
C
36
n
36
C
36
C
C
37
n
37
C
37
C
G
1
n
1
G
1
D
G
2
n
2
G
2
D
G
3
n
3
G
3
D
C
4
n
4
C
4
D
C
5
n
5
C
5
D
C
6
n
6
C
6
D
G
7
n
7
G
7
D
G
8
n
8
G
8
D
U
9
n
9
U
9
D
A
10
n
10
A
10
D
A
11
n
11
A
11
D
G
12
n
12
G
12
D
U
13
n
13
U
13
D
C
14
n
14
C
14
D
U
15
n
15
U
15
D
C
16
n
16
C
16
D
U
17
n
17
U
17
D
U
18
n
18
U
18
D
C
19
n
19
C
19
D
G
20
n
20
G
20
D
G
21
n
21
G
21
D
A
22
n
22
A
22
D
G
23
n
23
G
23
D
A
24
n
24
A
24
D
U
25
n
25
U
25
D
A
26
n
26
A
26
D
C
27
n
27
C
27
D
U
28
n
28
U
28
D
G
29
n
29
G
29
D
C
30
n
30
C
30
D
C
31
n
31
C
31
D
G
32
n
32
G
32
D
G
33
n
33
G
33
D
G
34
n
34
G
34
D
C
35
n
35
C
35
D
C
36
n
36
C
36
D
C
37
n
37
C
37
D
n
1
1
A
SER
2
n
2
SER
2
A
LEU
3
n
3
LEU
3
A
MET
4
n
4
MET
4
A
ASP
5
n
5
ASP
5
A
PRO
6
n
6
PRO
6
A
LEU
7
n
7
LEU
7
A
ALA
8
n
8
ALA
8
A
ASN
9
n
9
ASN
9
A
ALA
10
n
10
ALA
10
A
LEU
11
n
11
LEU
11
A
ASN
12
n
12
ASN
12
A
HIS
13
n
13
HIS
13
A
ILE
14
n
14
ILE
14
A
SER
15
n
15
SER
15
A
ASN
16
n
16
ASN
16
A
CYS
17
n
17
CYS
17
A
GLU
18
n
18
GLU
18
A
ARG
19
n
19
ARG
19
A
VAL
20
n
20
VAL
20
A
GLY
21
n
21
GLY
21
A
LYS
22
n
22
LYS
22
A
LYS
23
n
23
LYS
23
A
VAL
24
n
24
VAL
24
A
VAL
25
n
25
VAL
25
A
TYR
26
n
26
TYR
26
A
ILE
27
n
27
ILE
27
A
LYS
28
n
28
LYS
28
A
PRO
29
n
29
PRO
29
A
ALA
30
n
30
ALA
30
A
SER
31
n
31
SER
31
A
LYS
32
n
32
LYS
32
A
LEU
33
n
33
LEU
33
A
ILE
34
n
34
ILE
34
A
GLY
35
n
35
GLY
35
A
ARG
36
n
36
ARG
36
A
VAL
37
n
37
VAL
37
A
LEU
38
n
38
LEU
38
A
LYS
39
n
39
LYS
39
A
VAL
40
n
40
VAL
40
A
MSE
41
n
41
MSE
41
A
GLN
42
n
42
GLN
42
A
ASP
43
n
43
ASP
43
A
ASN
44
n
44
ASN
44
A
GLY
45
n
45
GLY
45
A
TYR
46
n
46
TYR
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
PHE
50
n
50
PHE
50
A
GLU
51
n
51
GLU
51
A
PHE
52
n
52
PHE
52
A
ILE
53
n
53
ILE
53
A
GLU
54
n
54
GLU
54
A
ASP
55
n
55
ASP
55
A
GLY
56
n
56
GLY
56
A
ARG
57
n
57
ARG
57
A
ALA
58
n
58
ALA
58
A
GLY
59
n
59
GLY
59
A
ILE
60
n
60
ILE
60
A
PHE
61
n
61
PHE
61
A
LYS
62
n
62
LYS
62
A
VAL
63
n
63
VAL
63
A
GLU
64
n
64
GLU
64
A
LEU
65
n
65
LEU
65
A
ILE
66
n
66
ILE
66
A
GLY
67
n
67
GLY
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
ASN
70
n
70
ASN
70
A
LYS
71
n
71
LYS
71
A
CYS
72
n
72
CYS
72
A
GLY
73
n
73
GLY
73
A
ALA
74
n
74
ALA
74
A
ILE
75
n
75
ILE
75
A
LYS
76
n
76
LYS
76
A
PRO
77
n
77
PRO
77
A
ARG
78
n
78
ARG
78
A
PHE
79
n
79
PHE
79
A
PRO
80
n
80
PRO
80
A
VAL
81
n
81
VAL
81
A
LYS
82
n
82
LYS
82
A
LYS
83
n
83
LYS
83
A
PHE
84
n
84
PHE
84
A
GLY
85
n
85
GLY
85
A
TYR
86
n
86
TYR
86
A
GLU
87
n
87
GLU
87
A
LYS
88
n
88
LYS
88
A
PHE
89
n
89
PHE
89
A
GLU
90
n
90
GLU
90
A
LYS
91
n
91
LYS
91
A
ARG
92
n
92
ARG
92
A
TYR
93
n
93
TYR
93
A
LEU
94
n
94
LEU
94
A
PRO
95
n
95
PRO
95
A
ALA
96
n
96
ALA
96
A
ARG
97
n
97
ARG
97
A
ASP
98
n
98
ASP
98
A
PHE
99
n
99
PHE
99
A
GLY
100
n
100
GLY
100
A
ILE
101
n
101
ILE
101
A
LEU
102
n
102
LEU
102
A
ILE
103
n
103
ILE
103
A
VAL
104
n
104
VAL
104
A
SER
105
n
105
SER
105
A
THR
106
n
106
THR
106
A
THR
107
n
107
THR
107
A
GLN
108
n
108
GLN
108
A
GLY
109
n
109
GLY
109
A
VAL
110
n
110
VAL
110
A
MSE
111
n
111
MSE
111
A
SER
112
n
112
SER
112
A
HIS
113
n
113
HIS
113
A
GLU
114
n
114
GLU
114
A
GLU
115
n
115
GLU
115
A
ALA
116
n
116
ALA
116
A
LYS
117
n
117
LYS
117
A
LYS
118
n
118
LYS
118
A
ARG
119
n
119
ARG
119
A
GLY
120
n
120
GLY
120
A
LEU
121
n
121
LEU
121
A
GLY
122
n
122
GLY
122
A
GLY
123
n
123
GLY
123
A
ARG
124
n
124
ARG
124
A
LEU
125
n
125
LEU
125
A
LEU
126
n
126
LEU
126
A
ALA
127
n
127
ALA
127
A
TYR
128
n
128
TYR
128
A
VAL
129
n
129
VAL
129
A
TYR
130
n
130
TYR
130
A
n
1
1
B
n
2
2
B
n
3
3
B
MET
4
n
4
MET
4
B
ASP
5
n
5
ASP
5
B
PRO
6
n
6
PRO
6
B
LEU
7
n
7
LEU
7
B
ALA
8
n
8
ALA
8
B
ASN
9
n
9
ASN
9
B
ALA
10
n
10
ALA
10
B
LEU
11
n
11
LEU
11
B
ASN
12
n
12
ASN
12
B
HIS
13
n
13
HIS
13
B
ILE
14
n
14
ILE
14
B
SER
15
n
15
SER
15
B
ASN
16
n
16
ASN
16
B
CYS
17
n
17
CYS
17
B
GLU
18
n
18
GLU
18
B
ARG
19
n
19
ARG
19
B
VAL
20
n
20
VAL
20
B
GLY
21
n
21
GLY
21
B
LYS
22
n
22
LYS
22
B
LYS
23
n
23
LYS
23
B
VAL
24
n
24
VAL
24
B
VAL
25
n
25
VAL
25
B
TYR
26
n
26
TYR
26
B
ILE
27
n
27
ILE
27
B
LYS
28
n
28
LYS
28
B
PRO
29
n
29
PRO
29
B
ALA
30
n
30
ALA
30
B
SER
31
n
31
SER
31
B
LYS
32
n
32
LYS
32
B
LEU
33
n
33
LEU
33
B
ILE
34
n
34
ILE
34
B
GLY
35
n
35
GLY
35
B
ARG
36
n
36
ARG
36
B
VAL
37
n
37
VAL
37
B
LEU
38
n
38
LEU
38
B
LYS
39
n
39
LYS
39
B
VAL
40
n
40
VAL
40
B
MSE
41
n
41
MSE
41
B
GLN
42
n
42
GLN
42
B
ASP
43
n
43
ASP
43
B
ASN
44
n
44
ASN
44
B
GLY
45
n
45
GLY
45
B
TYR
46
n
46
TYR
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLU
49
n
49
GLU
49
B
PHE
50
n
50
PHE
50
B
GLU
51
n
51
GLU
51
B
PHE
52
n
52
PHE
52
B
ILE
53
n
53
ILE
53
B
GLU
54
n
54
GLU
54
B
ASP
55
n
55
ASP
55
B
GLY
56
n
56
GLY
56
B
ARG
57
n
57
ARG
57
B
ALA
58
n
58
ALA
58
B
GLY
59
n
59
GLY
59
B
ILE
60
n
60
ILE
60
B
PHE
61
n
61
PHE
61
B
LYS
62
n
62
LYS
62
B
VAL
63
n
63
VAL
63
B
GLU
64
n
64
GLU
64
B
LEU
65
n
65
LEU
65
B
ILE
66
n
66
ILE
66
B
GLY
67
n
67
GLY
67
B
LYS
68
n
68
LYS
68
B
ILE
69
n
69
ILE
69
B
ASN
70
n
70
ASN
70
B
LYS
71
n
71
LYS
71
B
CYS
72
n
72
CYS
72
B
GLY
73
n
73
GLY
73
B
ALA
74
n
74
ALA
74
B
ILE
75
n
75
ILE
75
B
LYS
76
n
76
LYS
76
B
PRO
77
n
77
PRO
77
B
ARG
78
n
78
ARG
78
B
PHE
79
n
79
PHE
79
B
PRO
80
n
80
PRO
80
B
VAL
81
n
81
VAL
81
B
LYS
82
n
82
LYS
82
B
LYS
83
n
83
LYS
83
B
PHE
84
n
84
PHE
84
B
GLY
85
n
85
GLY
85
B
TYR
86
n
86
TYR
86
B
GLU
87
n
87
GLU
87
B
LYS
88
n
88
LYS
88
B
PHE
89
n
89
PHE
89
B
GLU
90
n
90
GLU
90
B
LYS
91
n
91
LYS
91
B
ARG
92
n
92
ARG
92
B
TYR
93
n
93
TYR
93
B
LEU
94
n
94
LEU
94
B
PRO
95
n
95
PRO
95
B
ALA
96
n
96
ALA
96
B
ARG
97
n
97
ARG
97
B
ASP
98
n
98
ASP
98
B
PHE
99
n
99
PHE
99
B
GLY
100
n
100
GLY
100
B
ILE
101
n
101
ILE
101
B
LEU
102
n
102
LEU
102
B
ILE
103
n
103
ILE
103
B
VAL
104
n
104
VAL
104
B
SER
105
n
105
SER
105
B
THR
106
n
106
THR
106
B
THR
107
n
107
THR
107
B
GLN
108
n
108
GLN
108
B
GLY
109
n
109
GLY
109
B
VAL
110
n
110
VAL
110
B
MSE
111
n
111
MSE
111
B
SER
112
n
112
SER
112
B
HIS
113
n
113
HIS
113
B
GLU
114
n
114
GLU
114
B
GLU
115
n
115
GLU
115
B
ALA
116
n
116
ALA
116
B
LYS
117
n
117
LYS
117
B
LYS
118
n
118
LYS
118
B
ARG
119
n
119
ARG
119
B
GLY
120
n
120
GLY
120
B
LEU
121
n
121
LEU
121
B
GLY
122
n
122
GLY
122
B
GLY
123
n
123
GLY
123
B
ARG
124
n
124
ARG
124
B
LEU
125
n
125
LEU
125
B
LEU
126
n
126
LEU
126
B
ALA
127
n
127
ALA
127
B
TYR
128
n
128
TYR
128
B
VAL
129
n
129
VAL
129
B
TYR
130
n
130
TYR
130
B
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
A
MSE
41
SELENOMETHIONINE
C
MSE
41
MET
A
MSE
111
SELENOMETHIONINE
C
MSE
111
MET
B
MSE
41
SELENOMETHIONINE
D
MSE
41
MET
B
MSE
111
SELENOMETHIONINE
D
MSE
111
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
27
C
N
ILE
27
A
O
PHE
61
C
O
PHE
61
A
N
LYS
62
C
N
LYS
62
A
O
GLU
51
C
O
GLU
51
A
O
MSE
111
C
O
MSE
111
A
N
VAL
104
C
N
VAL
104
A
N
SER
105
C
N
SER
105
A
O
ARG
124
C
O
ARG
124
A
N
TYR
128
C
N
TYR
128
A
O
GLY
73
C
O
GLY
73
A
O
MSE
111
C
O
MSE
111
A
N
VAL
104
C
N
VAL
104
A
N
SER
105
C
N
SER
105
A
O
ARG
124
C
O
ARG
124
A
O
GLY
123
C
O
GLY
123
A
N
VAL
81
C
N
VAL
81
B
O
ILE
27
D
O
ILE
27
B
N
PHE
61
D
N
PHE
61
B
N
LYS
62
D
N
LYS
62
B
O
GLU
51
D
O
GLU
51
B
O
MSE
111
D
O
MSE
111
B
N
VAL
104
D
N
VAL
104
B
N
SER
105
D
N
SER
105
B
O
ARG
124
D
O
ARG
124
B
N
TYR
128
D
N
TYR
128
B
O
GLY
73
D
O
GLY
73
B
O
MSE
111
D
O
MSE
111
B
N
VAL
104
D
N
VAL
104
B
N
SER
105
D
N
SER
105
B
O
ARG
124
D
O
ARG
124
B
O
GLY
123
D
O
GLY
123
B
N
VAL
81
D
N
VAL
81
1
A
MET
1
C
MET
1
1
Y
1
B
MET
1
D
MET
1
1
Y
1
B
SER
2
D
SER
2
1
Y
1
B
LEU
3
D
LEU
3
1
Y
1
C
C
P
OP3
G
G
1
1
-0.077
0.012
1.607
1.530
N
1
D
D
P
OP3
G
G
1
1
-0.084
0.012
1.607
1.523
N
1
A
LYS
28
-64.87
-85.83
1
A
ALA
30
-117.14
68.06
1
A
ASP
43
-53.44
-9.92
1
A
ARG
57
-108.12
-120.69
1
A
LYS
71
170.09
146.22
1
A
ASP
98
88.22
-5.91
1
B
LYS
28
-71.82
-77.17
1
B
PRO
29
-52.21
109.77
1
B
ALA
30
-111.93
72.26
1
B
ARG
57
-100.32
-122.26
1
B
ARG
97
-25.89
-59.73
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
44.9
3.77
0.00
0.00
3.77
0.00
-7.54
0.2510000
0.007
0.2180000
0.2180000
2.60
41.07
1415
29396
29179
4.8
89.9
RANDOM
1361993.35
0.00
1
RESTRAINED
THROUGHOUT
2.0
0
MAD
Engh and Huber
FLAT MODEL
33.43
0.344
0.41
0.35
5.00
0.44
0.38
2.60
41.07
215
3843
20
1580
2028
0.006
1.2
19.0
1.21
1.26
1.50
2.21
2.00
1.53
2.00
2.36
2.50
0.3790000
0.025
0.3430000
2.76
236
4253
6
5.3
84.8
64.3
2.57
41.07
1I6U
30271
30271
0
0
0.0450000
1,2,3
13.0
7.5
91.3
0.2490000
2.57
2.71
5.8
82.5
refinement
CNS
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
CNS
30S RIBOSOMAL PROTEIN S8P/RNA Complex
RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
ASP
5
C
ASP
5
HELX_P
A
VAL
20
C
VAL
20
1
1
16
A
SER
31
C
SER
31
HELX_P
A
ASN
44
C
ASN
44
1
2
14
A
TYR
86
C
TYR
86
HELX_P
A
LEU
94
C
LEU
94
1
3
9
A
HIS
113
C
HIS
113
HELX_P
A
ARG
119
C
ARG
119
1
4
7
B
ASP
5
D
ASP
5
HELX_P
B
GLY
21
D
GLY
21
1
5
17
B
SER
31
D
SER
31
HELX_P
B
ASN
44
D
ASN
44
1
6
14
B
TYR
86
D
TYR
86
HELX_P
B
LEU
94
D
LEU
94
1
7
9
B
HIS
113
D
HIS
113
HELX_P
B
ARG
119
D
ARG
119
1
8
7
covale
1.330
A
VAL
40
C
C
VAL
40
1_555
A
MSE
41
C
N
MSE
41
1_555
covale
1.326
A
MSE
41
C
C
MSE
41
1_555
A
GLN
42
C
N
GLN
42
1_555
covale
1.327
A
VAL
110
C
C
VAL
110
1_555
A
MSE
111
C
N
MSE
111
1_555
covale
1.326
A
MSE
111
C
C
MSE
111
1_555
A
SER
112
C
N
SER
112
1_555
covale
1.328
B
VAL
40
D
C
VAL
40
1_555
B
MSE
41
D
N
MSE
41
1_555
covale
1.329
B
MSE
41
D
C
MSE
41
1_555
B
GLN
42
D
N
GLN
42
1_555
covale
1.332
B
VAL
110
D
C
VAL
110
1_555
B
MSE
111
D
N
MSE
111
1_555
covale
1.331
B
MSE
111
D
C
MSE
111
1_555
B
SER
112
D
N
SER
112
1_555
hydrog
WATSON-CRICK
C
G
1
A
N1
G
1
1_555
C
C
37
A
N3
C
37
1_555
hydrog
WATSON-CRICK
C
G
1
A
N2
G
1
1_555
C
C
37
A
O2
C
37
1_555
hydrog
WATSON-CRICK
C
G
1
A
O6
G
1
1_555
C
C
37
A
N4
C
37
1_555
hydrog
WATSON-CRICK
C
G
2
A
N1
G
2
1_555
C
C
36
A
N3
C
36
1_555
hydrog
WATSON-CRICK
C
G
2
A
N2
G
2
1_555
C
C
36
A
O2
C
36
1_555
hydrog
WATSON-CRICK
C
G
2
A
O6
G
2
1_555
C
C
36
A
N4
C
36
1_555
hydrog
WATSON-CRICK
C
G
3
A
N1
G
3
1_555
C
C
35
A
N3
C
35
1_555
hydrog
WATSON-CRICK
C
G
3
A
N2
G
3
1_555
C
C
35
A
O2
C
35
1_555
hydrog
WATSON-CRICK
C
G
3
A
O6
G
3
1_555
C
C
35
A
N4
C
35
1_555
hydrog
WATSON-CRICK
C
C
4
A
N3
C
4
1_555
C
G
34
A
N1
G
34
1_555
hydrog
WATSON-CRICK
C
C
4
A
N4
C
4
1_555
C
G
34
A
O6
G
34
1_555
hydrog
WATSON-CRICK
C
C
4
A
O2
C
4
1_555
C
G
34
A
N2
G
34
1_555
hydrog
WATSON-CRICK
C
C
5
A
N3
C
5
1_555
C
G
33
A
N1
G
33
1_555
hydrog
WATSON-CRICK
C
C
5
A
N4
C
5
1_555
C
G
33
A
O6
G
33
1_555
hydrog
WATSON-CRICK
C
C
5
A
O2
C
5
1_555
C
G
33
A
N2
G
33
1_555
hydrog
WATSON-CRICK
C
C
6
A
N3
C
6
1_555
C
G
32
A
N1
G
32
1_555
hydrog
WATSON-CRICK
C
C
6
A
N4
C
6
1_555
C
G
32
A
O6
G
32
1_555
hydrog
WATSON-CRICK
C
C
6
A
O2
C
6
1_555
C
G
32
A
N2
G
32
1_555
hydrog
WATSON-CRICK
C
G
7
A
N1
G
7
1_555
C
C
31
A
N3
C
31
1_555
hydrog
WATSON-CRICK
C
G
7
A
N2
G
7
1_555
C
C
31
A
O2
C
31
1_555
hydrog
WATSON-CRICK
C
G
7
A
O6
G
7
1_555
C
C
31
A
N4
C
31
1_555
hydrog
WATSON-CRICK
C
G
8
A
N1
G
8
1_555
C
C
30
A
N3
C
30
1_555
hydrog
WATSON-CRICK
C
G
8
A
N2
G
8
1_555
C
C
30
A
O2
C
30
1_555
hydrog
WATSON-CRICK
C
G
8
A
O6
G
8
1_555
C
C
30
A
N4
C
30
1_555
hydrog
TYPE_28_PAIR
C
U
9
A
N3
U
9
1_555
C
G
29
A
O6
G
29
1_555
hydrog
TYPE_28_PAIR
C
U
9
A
O2
U
9
1_555
C
G
29
A
N1
G
29
1_555
hydrog
A-A MISPAIR
C
A
10
A
N3
A
10
1_555
C
A
11
A
N6
A
11
1_555
hydrog
WATSON-CRICK
C
A
11
A
N1
A
11
1_555
C
U
28
A
N3
U
28
1_555
hydrog
WATSON-CRICK
C
A
11
A
N6
A
11
1_555
C
U
28
A
O4
U
28
1_555
hydrog
WATSON-CRICK
C
G
12
A
N1
G
12
1_555
C
C
27
A
N3
C
27
1_555
hydrog
WATSON-CRICK
C
G
12
A
N2
G
12
1_555
C
C
27
A
O2
C
27
1_555
hydrog
WATSON-CRICK
C
G
12
A
O6
G
12
1_555
C
C
27
A
N4
C
27
1_555
hydrog
WATSON-CRICK
C
U
13
A
N3
U
13
1_555
C
A
24
A
N1
A
24
1_555
hydrog
WATSON-CRICK
C
U
13
A
O4
U
13
1_555
C
A
24
A
N6
A
24
1_555
hydrog
U-A PAIR
C
U
13
A
O2
U
13
1_555
C
A
26
A
N6
A
26
1_555
hydrog
WATSON-CRICK
C
C
14
A
N3
C
14
1_555
C
G
23
A
N1
G
23
1_555
hydrog
WATSON-CRICK
C
C
14
A
N4
C
14
1_555
C
G
23
A
O6
G
23
1_555
hydrog
WATSON-CRICK
C
C
14
A
O2
C
14
1_555
C
G
23
A
N2
G
23
1_555
hydrog
WATSON-CRICK
C
U
15
A
N3
U
15
1_555
C
A
22
A
N1
A
22
1_555
hydrog
WATSON-CRICK
C
U
15
A
O4
U
15
1_555
C
A
22
A
N6
A
22
1_555
hydrog
WATSON-CRICK
C
C
16
A
N3
C
16
1_555
C
G
21
A
N1
G
21
1_555
hydrog
WATSON-CRICK
C
C
16
A
N4
C
16
1_555
C
G
21
A
O6
G
21
1_555
hydrog
WATSON-CRICK
C
C
16
A
O2
C
16
1_555
C
G
21
A
N2
G
21
1_555
hydrog
U-G MISPAIR
C
U
17
A
O2
U
17
1_555
C
G
20
A
N1
G
20
1_555
hydrog
U-A PAIR
C
U
25
A
O2
U
25
1_555
C
A
26
A
N6
A
26
1_555
hydrog
U-C MISPAIR
C
U
25
A
O2
U
25
1_555
C
C
27
A
N4
C
27
1_555
hydrog
WATSON-CRICK
D
G
1
B
N1
G
1
1_555
D
C
37
B
N3
C
37
1_555
hydrog
WATSON-CRICK
D
G
1
B
N2
G
1
1_555
D
C
37
B
O2
C
37
1_555
hydrog
WATSON-CRICK
D
G
1
B
O6
G
1
1_555
D
C
37
B
N4
C
37
1_555
hydrog
WATSON-CRICK
D
G
2
B
N1
G
2
1_555
D
C
36
B
N3
C
36
1_555
hydrog
WATSON-CRICK
D
G
2
B
N2
G
2
1_555
D
C
36
B
O2
C
36
1_555
hydrog
WATSON-CRICK
D
G
2
B
O6
G
2
1_555
D
C
36
B
N4
C
36
1_555
hydrog
WATSON-CRICK
D
G
3
B
N1
G
3
1_555
D
C
35
B
N3
C
35
1_555
hydrog
WATSON-CRICK
D
G
3
B
N2
G
3
1_555
D
C
35
B
O2
C
35
1_555
hydrog
WATSON-CRICK
D
G
3
B
O6
G
3
1_555
D
C
35
B
N4
C
35
1_555
hydrog
WATSON-CRICK
D
C
4
B
N3
C
4
1_555
D
G
34
B
N1
G
34
1_555
hydrog
WATSON-CRICK
D
C
4
B
N4
C
4
1_555
D
G
34
B
O6
G
34
1_555
hydrog
WATSON-CRICK
D
C
4
B
O2
C
4
1_555
D
G
34
B
N2
G
34
1_555
hydrog
WATSON-CRICK
D
C
5
B
N3
C
5
1_555
D
G
33
B
N1
G
33
1_555
hydrog
WATSON-CRICK
D
C
5
B
N4
C
5
1_555
D
G
33
B
O6
G
33
1_555
hydrog
WATSON-CRICK
D
C
5
B
O2
C
5
1_555
D
G
33
B
N2
G
33
1_555
hydrog
WATSON-CRICK
D
C
6
B
N3
C
6
1_555
D
G
32
B
N1
G
32
1_555
hydrog
WATSON-CRICK
D
C
6
B
N4
C
6
1_555
D
G
32
B
O6
G
32
1_555
hydrog
WATSON-CRICK
D
C
6
B
O2
C
6
1_555
D
G
32
B
N2
G
32
1_555
hydrog
WATSON-CRICK
D
G
7
B
N1
G
7
1_555
D
C
31
B
N3
C
31
1_555
hydrog
WATSON-CRICK
D
G
7
B
N2
G
7
1_555
D
C
31
B
O2
C
31
1_555
hydrog
WATSON-CRICK
D
G
7
B
O6
G
7
1_555
D
C
31
B
N4
C
31
1_555
hydrog
WATSON-CRICK
D
G
8
B
N1
G
8
1_555
D
C
30
B
N3
C
30
1_555
hydrog
WATSON-CRICK
D
G
8
B
N2
G
8
1_555
D
C
30
B
O2
C
30
1_555
hydrog
WATSON-CRICK
D
G
8
B
O6
G
8
1_555
D
C
30
B
N4
C
30
1_555
hydrog
TYPE_28_PAIR
D
U
9
B
N3
U
9
1_555
D
G
29
B
O6
G
29
1_555
hydrog
TYPE_28_PAIR
D
U
9
B
O2
U
9
1_555
D
G
29
B
N1
G
29
1_555
hydrog
A-A MISPAIR
D
A
10
B
N3
A
10
1_555
D
A
11
B
N6
A
11
1_555
hydrog
WATSON-CRICK
D
A
11
B
N1
A
11
1_555
D
U
28
B
N3
U
28
1_555
hydrog
WATSON-CRICK
D
A
11
B
N6
A
11
1_555
D
U
28
B
O4
U
28
1_555
hydrog
WATSON-CRICK
D
G
12
B
N1
G
12
1_555
D
C
27
B
N3
C
27
1_555
hydrog
WATSON-CRICK
D
G
12
B
N2
G
12
1_555
D
C
27
B
O2
C
27
1_555
hydrog
WATSON-CRICK
D
G
12
B
O6
G
12
1_555
D
C
27
B
N4
C
27
1_555
hydrog
WATSON-CRICK
D
U
13
B
N3
U
13
1_555
D
A
24
B
N1
A
24
1_555
hydrog
WATSON-CRICK
D
U
13
B
O4
U
13
1_555
D
A
24
B
N6
A
24
1_555
hydrog
U-A PAIR
D
U
13
B
O2
U
13
1_555
D
A
26
B
N6
A
26
1_555
hydrog
WATSON-CRICK
D
C
14
B
N3
C
14
1_555
D
G
23
B
N1
G
23
1_555
hydrog
WATSON-CRICK
D
C
14
B
N4
C
14
1_555
D
G
23
B
O6
G
23
1_555
hydrog
WATSON-CRICK
D
C
14
B
O2
C
14
1_555
D
G
23
B
N2
G
23
1_555
hydrog
WATSON-CRICK
D
U
15
B
N3
U
15
1_555
D
A
22
B
N1
A
22
1_555
hydrog
WATSON-CRICK
D
U
15
B
O4
U
15
1_555
D
A
22
B
N6
A
22
1_555
hydrog
WATSON-CRICK
D
C
16
B
N3
C
16
1_555
D
G
21
B
N1
G
21
1_555
hydrog
WATSON-CRICK
D
C
16
B
N4
C
16
1_555
D
G
21
B
O6
G
21
1_555
hydrog
WATSON-CRICK
D
C
16
B
O2
C
16
1_555
D
G
21
B
N2
G
21
1_555
hydrog
U-G MISPAIR
D
U
17
B
O2
U
17
1_555
D
G
20
B
N1
G
20
1_555
hydrog
U-A PAIR
D
U
25
B
O2
U
25
1_555
D
A
26
B
N6
A
26
1_555
hydrog
U-C MISPAIR
D
U
25
B
O2
U
25
1_555
D
C
27
B
N4
C
27
1_555
RIBOSOME
protein-RNA interactions, ribosome, ribosomal protein S8, RNA
A
LYS
76
C
LYS
76
1
A
PRO
77
C
PRO
77
-0.27
B
LYS
76
D
LYS
76
1
B
PRO
77
D
PRO
77
-0.03
RS8_METJA
UNP
2
1
P54041
MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP
VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY
1I6U
PDB
1
1I6U
1
130
1I6U
1
130
P54041
A
1
1
130
1
130
1I6U
1
130
P54041
B
1
1
130
1
37
1I6U
1
37
1I6U
C
2
1
37
1
37
1I6U
1
37
1I6U
D
2
1
37
1
MET
MODIFIED RESIDUE
MSE
41
1I6U
A
P54041
UNP
41
41
1
MET
MODIFIED RESIDUE
MSE
111
1I6U
A
P54041
UNP
111
111
2
MET
MODIFIED RESIDUE
MSE
41
1I6U
B
P54041
UNP
41
41
2
MET
MODIFIED RESIDUE
MSE
111
1I6U
B
P54041
UNP
111
111
3
4
4
3
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
24
C
VAL
24
A
ILE
27
C
ILE
27
A
ILE
60
C
ILE
60
A
GLU
64
C
GLU
64
A
PHE
50
C
PHE
50
A
ILE
53
C
ILE
53
A
GLY
109
C
GLY
109
A
SER
112
C
SER
112
A
ILE
101
C
ILE
101
A
THR
106
C
THR
106
A
GLY
123
C
GLY
123
A
VAL
129
C
VAL
129
A
CYS
72
C
CYS
72
A
ALA
74
C
ALA
74
A
GLY
109
C
GLY
109
A
SER
112
C
SER
112
A
ILE
101
C
ILE
101
A
THR
106
C
THR
106
A
GLY
123
C
GLY
123
A
VAL
129
C
VAL
129
A
PRO
80
C
PRO
80
A
VAL
81
C
VAL
81
B
VAL
24
D
VAL
24
B
ILE
27
D
ILE
27
B
ILE
60
D
ILE
60
B
GLU
64
D
GLU
64
B
PHE
50
D
PHE
50
B
ILE
53
D
ILE
53
B
GLY
109
D
GLY
109
B
SER
112
D
SER
112
B
ILE
101
D
ILE
101
B
THR
106
D
THR
106
B
GLY
123
D
GLY
123
B
VAL
129
D
VAL
129
B
CYS
72
D
CYS
72
B
ALA
74
D
ALA
74
B
GLY
109
D
GLY
109
B
SER
112
D
SER
112
B
ILE
101
D
ILE
101
B
THR
106
D
THR
106
B
GLY
123
D
GLY
123
B
VAL
129
D
VAL
129
B
PRO
80
D
PRO
80
B
VAL
81
D
VAL
81
BINDING SITE FOR RESIDUE SO4 B 131
Software
5
BINDING SITE FOR RESIDUE SO4 B 132
Software
6
BINDING SITE FOR RESIDUE SO4 D 38
Software
7
BINDING SITE FOR RESIDUE SO4 C 38
Software
7
A
ARG
124
C
ARG
124
5
1_555
B
ARG
97
D
ARG
97
5
1_555
B
HOH
158
L
HOH
5
1_555
B
HOH
165
L
HOH
5
1_555
C
G
12
A
G
12
5
1_555
B
PHE
79
D
PHE
79
6
8_665
B
ARG
92
D
ARG
92
6
8_665
B
ARG
124
D
ARG
124
6
1_555
B
HOH
144
L
HOH
6
1_555
B
HOH
179
L
HOH
6
1_555
D
G
12
B
G
12
6
1_555
B
THR
107
D
THR
107
7
1_555
B
GLN
108
D
GLN
108
7
1_555
B
LEU
121
D
LEU
121
7
1_555
D
U
15
B
U
15
7
1_555
D
G
23
B
G
23
7
1_555
D
A
24
B
A
24
7
1_555
D
HOH
51
J
HOH
7
1_555
A
THR
107
C
THR
107
7
1_555
A
GLN
108
C
GLN
108
7
1_555
A
LEU
121
C
LEU
121
7
1_555
C
G
23
A
G
23
7
1_555
C
A
24
A
A
24
7
1_555
C
HOH
91
I
HOH
7
1_555
C
HOH
100
I
HOH
7
1_555
96
P 43 21 2