0.010164
0.005868
0.000000
0.000000
0.011736
0.000000
0.000000
0.000000
0.006035
0.00000
0.00000
0.00000
Vandeputte-Rutten, L.
Kramer, R.A.
Kroon, J.
Dekker, N.
Egmond, M.R.
Gros, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
98.389
98.389
165.695
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C14 H28 O6
292.369
n
octyl beta-D-glucopyranoside
Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside
D-saccharide
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
N
O
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
R
C
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
Y
180
N
N
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
S
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
N
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
S
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
S
C
N
290
N
O
N
291
N
C
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
O
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
R
C
N
365
N
O
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
N
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
N
N
405
S
C
N
406
N
C
N
407
N
O
N
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
N
433
N
C
N
434
N
C
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
Y
175
N
sing
Y
176
N
doub
Y
177
N
doub
N
178
N
sing
Y
179
N
sing
N
180
N
sing
Y
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
20
5033
5039
10.1093/emboj/20.18.5033
11566868
Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site.
2001
10.2210/pdb1i78/pdb
pdb_00001i78
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
toroidal mirror
CCD
1999-12-09
ADSC QUANTUM 4
Double crystal, Si(111) or Si(311)
SINGLE WAVELENGTH
M
x-ray
1
0.9322
1.0
ID14-4
ESRF
0.9322
SYNCHROTRON
ESRF BEAMLINE ID14-4
33495.594
PROTEASE VII
3.4.21.87
S99A,G216K,K217G
2
man
polymer
292.369
octyl beta-D-glucopyranoside
4
man
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
2
syn
non-polymer
18.015
water
29
nat
water
OMPT, OMPTIN, OUTER MEMBRANE PROTEIN 3B
no
no
STETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVSQLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGN
MVDQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI
GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYY
VTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF
STETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVSQLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGN
MVDQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDI
GSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYY
VTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia coli
K12
Escherichia
Escherichia coli
sample
OMPT
83333
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PRAK11
1
3.45
64.40
VAPOR DIFFUSION, HANGING DROP
5.5
30% (v/v) 2-methyl-2,4-pentanediol, 0.3 M sodium citrate PH 5.5, 1% (w/v) octyl-beta-D-glucopyranoside, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_site
struct_site_gen
chem_comp
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Derived calculations
Source and taxonomy
Version format compliance
Data collection
Derived calculations
Structure summary
Database references
Structure summary
Data collection
1
0
2001-10-03
1
1
2008-04-27
1
2
2011-07-13
1
3
2020-07-29
1
4
2021-10-27
1
5
2024-02-07
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
b-octylglucoside
RCSB
Y
RCSB
2001-03-08
REL
REL
BOG
octyl beta-D-glucopyranoside
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
BOG
700
2
BOG
BOG
700
A
BOG
900
2
BOG
BOG
900
A
MPD
710
3
MPD
MPD
710
A
MPD
720
3
MPD
MPD
720
A
BOG
600
2
BOG
BOG
600
B
BOG
800
2
BOG
BOG
800
B
HOH
2
4
HOH
HOH
901
A
HOH
3
4
HOH
HOH
902
A
HOH
5
4
HOH
HOH
903
A
HOH
7
4
HOH
HOH
904
A
HOH
8
4
HOH
HOH
905
A
HOH
10
4
HOH
HOH
906
A
HOH
11
4
HOH
HOH
907
A
HOH
12
4
HOH
HOH
908
A
HOH
16
4
HOH
HOH
909
A
HOH
20
4
HOH
HOH
910
A
HOH
22
4
HOH
HOH
911
A
HOH
24
4
HOH
HOH
912
A
HOH
28
4
HOH
HOH
913
A
HOH
29
4
HOH
HOH
914
A
HOH
31
4
HOH
HOH
915
A
HOH
32
4
HOH
HOH
916
A
HOH
33
4
HOH
HOH
917
A
HOH
34
4
HOH
HOH
918
A
HOH
35
4
HOH
HOH
919
A
HOH
1
4
HOH
HOH
801
B
HOH
4
4
HOH
HOH
802
B
HOH
17
4
HOH
HOH
803
B
HOH
18
4
HOH
HOH
804
B
HOH
19
4
HOH
HOH
805
B
HOH
21
4
HOH
HOH
806
B
HOH
25
4
HOH
HOH
807
B
HOH
26
4
HOH
HOH
808
B
HOH
27
4
HOH
HOH
809
B
HOH
30
4
HOH
HOH
810
B
SER
1
n
1
SER
1
A
THR
2
n
2
THR
2
A
GLU
3
n
3
GLU
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
SER
6
n
6
SER
6
A
PHE
7
n
7
PHE
7
A
THR
8
n
8
THR
8
A
PRO
9
n
9
PRO
9
A
ASP
10
n
10
ASP
10
A
ASN
11
n
11
ASN
11
A
ILE
12
n
12
ILE
12
A
ASN
13
n
13
ASN
13
A
ALA
14
n
14
ALA
14
A
ASP
15
n
15
ASP
15
A
ILE
16
n
16
ILE
16
A
SER
17
n
17
SER
17
A
LEU
18
n
18
LEU
18
A
GLY
19
n
19
GLY
19
A
THR
20
n
20
THR
20
A
LEU
21
n
21
LEU
21
A
SER
22
n
22
SER
22
A
GLY
23
n
23
GLY
23
A
LYS
24
n
24
LYS
24
A
THR
25
n
25
THR
25
A
LYS
26
n
26
LYS
26
A
GLU
27
n
27
GLU
27
A
ARG
28
n
28
ARG
28
A
VAL
29
n
29
VAL
29
A
TYR
30
n
30
TYR
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
GLU
33
n
33
GLU
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
GLY
36
n
36
GLY
36
A
ARG
37
n
37
ARG
37
A
LYS
38
n
38
LYS
38
A
VAL
39
n
39
VAL
39
A
SER
40
n
40
SER
40
A
GLN
41
n
41
GLN
41
A
LEU
42
n
42
LEU
42
A
ASP
43
n
43
ASP
43
A
TRP
44
n
44
TRP
44
A
LYS
45
n
45
LYS
45
A
PHE
46
n
46
PHE
46
A
ASN
47
n
47
ASN
47
A
ASN
48
n
48
ASN
48
A
ALA
49
n
49
ALA
49
A
ALA
50
n
50
ALA
50
A
ILE
51
n
51
ILE
51
A
ILE
52
n
52
ILE
52
A
LYS
53
n
53
LYS
53
A
GLY
54
n
54
GLY
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
ASN
57
n
57
ASN
57
A
TRP
58
n
58
TRP
58
A
ASP
59
n
59
ASP
59
A
LEU
60
n
60
LEU
60
A
MET
61
n
61
MET
61
A
PRO
62
n
62
PRO
62
A
GLN
63
n
63
GLN
63
A
ILE
64
n
64
ILE
64
A
SER
65
n
65
SER
65
A
ILE
66
n
66
ILE
66
A
GLY
67
n
67
GLY
67
A
ALA
68
n
68
ALA
68
A
ALA
69
n
69
ALA
69
A
GLY
70
n
70
GLY
70
A
TRP
71
n
71
TRP
71
A
THR
72
n
72
THR
72
A
THR
73
n
73
THR
73
A
LEU
74
n
74
LEU
74
A
GLY
75
n
75
GLY
75
A
SER
76
n
76
SER
76
A
ARG
77
n
77
ARG
77
A
GLY
78
n
78
GLY
78
A
GLY
79
n
79
GLY
79
A
ASN
80
n
80
ASN
80
A
MET
81
n
81
MET
81
A
VAL
82
n
82
VAL
82
A
ASP
83
n
83
ASP
83
A
GLN
84
n
84
GLN
84
A
ASP
85
n
85
ASP
85
A
TRP
86
n
86
TRP
86
A
MET
87
n
87
MET
87
A
ASP
88
n
88
ASP
88
A
SER
89
n
89
SER
89
A
SER
90
n
90
SER
90
A
ASN
91
n
91
ASN
91
A
PRO
92
n
92
PRO
92
A
GLY
93
n
93
GLY
93
A
THR
94
n
94
THR
94
A
TRP
95
n
95
TRP
95
A
THR
96
n
96
THR
96
A
ASP
97
n
97
ASP
97
A
GLU
98
n
98
GLU
98
A
ALA
99
n
99
ALA
99
A
ARG
100
n
100
ARG
100
A
HIS
101
n
101
HIS
101
A
PRO
102
n
102
PRO
102
A
ASP
103
n
103
ASP
103
A
THR
104
n
104
THR
104
A
GLN
105
n
105
GLN
105
A
LEU
106
n
106
LEU
106
A
ASN
107
n
107
ASN
107
A
TYR
108
n
108
TYR
108
A
ALA
109
n
109
ALA
109
A
ASN
110
n
110
ASN
110
A
GLU
111
n
111
GLU
111
A
PHE
112
n
112
PHE
112
A
ASP
113
n
113
ASP
113
A
LEU
114
n
114
LEU
114
A
ASN
115
n
115
ASN
115
A
ILE
116
n
116
ILE
116
A
LYS
117
n
117
LYS
117
A
GLY
118
n
118
GLY
118
A
TRP
119
n
119
TRP
119
A
LEU
120
n
120
LEU
120
A
LEU
121
n
121
LEU
121
A
ASN
122
n
122
ASN
122
A
GLU
123
n
123
GLU
123
A
PRO
124
n
124
PRO
124
A
ASN
125
n
125
ASN
125
A
TYR
126
n
126
TYR
126
A
ARG
127
n
127
ARG
127
A
LEU
128
n
128
LEU
128
A
GLY
129
n
129
GLY
129
A
LEU
130
n
130
LEU
130
A
MET
131
n
131
MET
131
A
ALA
132
n
132
ALA
132
A
GLY
133
n
133
GLY
133
A
TYR
134
n
134
TYR
134
A
GLN
135
n
135
GLN
135
A
GLU
136
n
136
GLU
136
A
SER
137
n
137
SER
137
A
ARG
138
n
138
ARG
138
A
TYR
139
n
139
TYR
139
A
SER
140
n
140
SER
140
A
PHE
141
n
141
PHE
141
A
THR
142
n
142
THR
142
A
ALA
143
n
143
ALA
143
A
ARG
144
n
144
ARG
144
A
GLY
145
n
145
GLY
145
A
GLY
146
n
146
GLY
146
A
SER
147
n
147
SER
147
A
TYR
148
n
148
TYR
148
A
ILE
149
n
149
ILE
149
A
TYR
150
n
150
TYR
150
A
SER
151
n
151
SER
151
A
SER
152
n
152
SER
152
A
GLU
153
n
153
GLU
153
A
GLU
154
n
154
GLU
154
A
GLY
155
n
155
GLY
155
A
PHE
156
n
156
PHE
156
A
ARG
157
n
157
ARG
157
A
ASP
158
n
158
ASP
158
A
ASP
159
n
159
ASP
159
A
ILE
160
n
160
ILE
160
A
GLY
161
n
161
GLY
161
A
SER
162
n
162
SER
162
A
PHE
163
n
163
PHE
163
A
PRO
164
n
164
PRO
164
A
ASN
165
n
165
ASN
165
A
GLY
166
n
166
GLY
166
A
GLU
167
n
167
GLU
167
A
ARG
168
n
168
ARG
168
A
ALA
169
n
169
ALA
169
A
ILE
170
n
170
ILE
170
A
GLY
171
n
171
GLY
171
A
TYR
172
n
172
TYR
172
A
LYS
173
n
173
LYS
173
A
GLN
174
n
174
GLN
174
A
ARG
175
n
175
ARG
175
A
PHE
176
n
176
PHE
176
A
LYS
177
n
177
LYS
177
A
MET
178
n
178
MET
178
A
PRO
179
n
179
PRO
179
A
TYR
180
n
180
TYR
180
A
ILE
181
n
181
ILE
181
A
GLY
182
n
182
GLY
182
A
LEU
183
n
183
LEU
183
A
THR
184
n
184
THR
184
A
GLY
185
n
185
GLY
185
A
SER
186
n
186
SER
186
A
TYR
187
n
187
TYR
187
A
ARG
188
n
188
ARG
188
A
TYR
189
n
189
TYR
189
A
GLU
190
n
190
GLU
190
A
ASP
191
n
191
ASP
191
A
PHE
192
n
192
PHE
192
A
GLU
193
n
193
GLU
193
A
LEU
194
n
194
LEU
194
A
GLY
195
n
195
GLY
195
A
GLY
196
n
196
GLY
196
A
THR
197
n
197
THR
197
A
PHE
198
n
198
PHE
198
A
LYS
199
n
199
LYS
199
A
TYR
200
n
200
TYR
200
A
SER
201
n
201
SER
201
A
GLY
202
n
202
GLY
202
A
TRP
203
n
203
TRP
203
A
VAL
204
n
204
VAL
204
A
GLU
205
n
205
GLU
205
A
SER
206
n
206
SER
206
A
SER
207
n
207
SER
207
A
ASP
208
n
208
ASP
208
A
ASN
209
n
209
ASN
209
A
ASP
210
n
210
ASP
210
A
GLU
211
n
211
GLU
211
A
HIS
212
n
212
HIS
212
A
TYR
213
n
213
TYR
213
A
ASP
214
n
214
ASP
214
A
PRO
215
n
215
PRO
215
A
LYS
216
n
216
LYS
216
A
GLY
217
n
217
GLY
217
A
ARG
218
n
218
ARG
218
A
ILE
219
n
219
ILE
219
A
THR
220
n
220
THR
220
A
TYR
221
n
221
TYR
221
A
ARG
222
n
222
ARG
222
A
SER
223
n
223
SER
223
A
LYS
224
n
224
LYS
224
A
VAL
225
n
225
VAL
225
A
LYS
226
n
226
LYS
226
A
ASP
227
n
227
ASP
227
A
GLN
228
n
228
GLN
228
A
ASN
229
n
229
ASN
229
A
TYR
230
n
230
TYR
230
A
TYR
231
n
231
TYR
231
A
SER
232
n
232
SER
232
A
VAL
233
n
233
VAL
233
A
ALA
234
n
234
ALA
234
A
VAL
235
n
235
VAL
235
A
ASN
236
n
236
ASN
236
A
ALA
237
n
237
ALA
237
A
GLY
238
n
238
GLY
238
A
TYR
239
n
239
TYR
239
A
TYR
240
n
240
TYR
240
A
VAL
241
n
241
VAL
241
A
THR
242
n
242
THR
242
A
PRO
243
n
243
PRO
243
A
ASN
244
n
244
ASN
244
A
ALA
245
n
245
ALA
245
A
LYS
246
n
246
LYS
246
A
VAL
247
n
247
VAL
247
A
TYR
248
n
248
TYR
248
A
VAL
249
n
249
VAL
249
A
GLU
250
n
250
GLU
250
A
GLY
251
n
251
GLY
251
A
ALA
252
n
252
ALA
252
A
TRP
253
n
253
TRP
253
A
ASN
254
n
254
ASN
254
A
ARG
255
n
255
ARG
255
A
VAL
256
n
256
VAL
256
A
THR
257
n
257
THR
257
A
ASN
258
n
258
ASN
258
A
LYS
259
n
259
LYS
259
A
LYS
260
n
260
LYS
260
A
GLY
261
n
261
GLY
261
A
ASN
262
n
262
ASN
262
A
THR
263
n
263
THR
263
A
SER
264
n
264
SER
264
A
LEU
265
n
265
LEU
265
A
TYR
266
n
266
TYR
266
A
ASP
267
n
267
ASP
267
A
HIS
268
n
268
HIS
268
A
ASN
269
n
269
ASN
269
A
ASN
270
n
270
ASN
270
A
ASN
271
n
271
ASN
271
A
THR
272
n
272
THR
272
A
SER
273
n
273
SER
273
A
ASP
274
n
274
ASP
274
A
TYR
275
n
275
TYR
275
A
SER
276
n
276
SER
276
A
LYS
277
n
277
LYS
277
A
ASN
278
n
278
ASN
278
A
GLY
279
n
279
GLY
279
A
ALA
280
n
280
ALA
280
A
GLY
281
n
281
GLY
281
A
ILE
282
n
282
ILE
282
A
GLU
283
n
283
GLU
283
A
ASN
284
n
284
ASN
284
A
TYR
285
n
285
TYR
285
A
ASN
286
n
286
ASN
286
A
PHE
287
n
287
PHE
287
A
ILE
288
n
288
ILE
288
A
THR
289
n
289
THR
289
A
THR
290
n
290
THR
290
A
ALA
291
n
291
ALA
291
A
GLY
292
n
292
GLY
292
A
LEU
293
n
293
LEU
293
A
LYS
294
n
294
LYS
294
A
TYR
295
n
295
TYR
295
A
THR
296
n
296
THR
296
A
PHE
297
n
297
PHE
297
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
ASN
11
n
11
ASN
11
B
ILE
12
n
12
ILE
12
B
ASN
13
n
13
ASN
13
B
ALA
14
n
14
ALA
14
B
ASP
15
n
15
ASP
15
B
ILE
16
n
16
ILE
16
B
SER
17
n
17
SER
17
B
LEU
18
n
18
LEU
18
B
GLY
19
n
19
GLY
19
B
THR
20
n
20
THR
20
B
LEU
21
n
21
LEU
21
B
SER
22
n
22
SER
22
B
GLY
23
n
23
GLY
23
B
LYS
24
n
24
LYS
24
B
THR
25
n
25
THR
25
B
LYS
26
n
26
LYS
26
B
GLU
27
n
27
GLU
27
B
ARG
28
n
28
ARG
28
B
VAL
29
n
29
VAL
29
B
TYR
30
n
30
TYR
30
B
LEU
31
n
31
LEU
31
B
ALA
32
n
32
ALA
32
B
GLU
33
n
33
GLU
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
GLY
36
n
36
GLY
36
B
ARG
37
n
37
ARG
37
B
LYS
38
n
38
LYS
38
B
VAL
39
n
39
VAL
39
B
SER
40
n
40
SER
40
B
GLN
41
n
41
GLN
41
B
LEU
42
n
42
LEU
42
B
ASP
43
n
43
ASP
43
B
TRP
44
n
44
TRP
44
B
LYS
45
n
45
LYS
45
B
PHE
46
n
46
PHE
46
B
ASN
47
n
47
ASN
47
B
ASN
48
n
48
ASN
48
B
ALA
49
n
49
ALA
49
B
ALA
50
n
50
ALA
50
B
ILE
51
n
51
ILE
51
B
ILE
52
n
52
ILE
52
B
LYS
53
n
53
LYS
53
B
GLY
54
n
54
GLY
54
B
ALA
55
n
55
ALA
55
B
ILE
56
n
56
ILE
56
B
ASN
57
n
57
ASN
57
B
TRP
58
n
58
TRP
58
B
ASP
59
n
59
ASP
59
B
LEU
60
n
60
LEU
60
B
MET
61
n
61
MET
61
B
PRO
62
n
62
PRO
62
B
GLN
63
n
63
GLN
63
B
ILE
64
n
64
ILE
64
B
SER
65
n
65
SER
65
B
ILE
66
n
66
ILE
66
B
GLY
67
n
67
GLY
67
B
ALA
68
n
68
ALA
68
B
ALA
69
n
69
ALA
69
B
GLY
70
n
70
GLY
70
B
TRP
71
n
71
TRP
71
B
THR
72
n
72
THR
72
B
THR
73
n
73
THR
73
B
LEU
74
n
74
LEU
74
B
GLY
75
n
75
GLY
75
B
SER
76
n
76
SER
76
B
ARG
77
n
77
ARG
77
B
GLY
78
n
78
GLY
78
B
GLY
79
n
79
GLY
79
B
ASN
80
n
80
ASN
80
B
MET
81
n
81
MET
81
B
VAL
82
n
82
VAL
82
B
ASP
83
n
83
ASP
83
B
GLN
84
n
84
GLN
84
B
ASP
85
n
85
ASP
85
B
TRP
86
n
86
TRP
86
B
MET
87
n
87
MET
87
B
ASP
88
n
88
ASP
88
B
SER
89
n
89
SER
89
B
SER
90
n
90
SER
90
B
ASN
91
n
91
ASN
91
B
PRO
92
n
92
PRO
92
B
GLY
93
n
93
GLY
93
B
THR
94
n
94
THR
94
B
TRP
95
n
95
TRP
95
B
THR
96
n
96
THR
96
B
ASP
97
n
97
ASP
97
B
GLU
98
n
98
GLU
98
B
ALA
99
n
99
ALA
99
B
ARG
100
n
100
ARG
100
B
HIS
101
n
101
HIS
101
B
PRO
102
n
102
PRO
102
B
ASP
103
n
103
ASP
103
B
THR
104
n
104
THR
104
B
GLN
105
n
105
GLN
105
B
LEU
106
n
106
LEU
106
B
ASN
107
n
107
ASN
107
B
TYR
108
n
108
TYR
108
B
ALA
109
n
109
ALA
109
B
ASN
110
n
110
ASN
110
B
GLU
111
n
111
GLU
111
B
PHE
112
n
112
PHE
112
B
ASP
113
n
113
ASP
113
B
LEU
114
n
114
LEU
114
B
ASN
115
n
115
ASN
115
B
ILE
116
n
116
ILE
116
B
LYS
117
n
117
LYS
117
B
GLY
118
n
118
GLY
118
B
TRP
119
n
119
TRP
119
B
LEU
120
n
120
LEU
120
B
LEU
121
n
121
LEU
121
B
ASN
122
n
122
ASN
122
B
GLU
123
n
123
GLU
123
B
PRO
124
n
124
PRO
124
B
ASN
125
n
125
ASN
125
B
TYR
126
n
126
TYR
126
B
ARG
127
n
127
ARG
127
B
LEU
128
n
128
LEU
128
B
GLY
129
n
129
GLY
129
B
LEU
130
n
130
LEU
130
B
MET
131
n
131
MET
131
B
ALA
132
n
132
ALA
132
B
GLY
133
n
133
GLY
133
B
TYR
134
n
134
TYR
134
B
GLN
135
n
135
GLN
135
B
GLU
136
n
136
GLU
136
B
SER
137
n
137
SER
137
B
ARG
138
n
138
ARG
138
B
TYR
139
n
139
TYR
139
B
SER
140
n
140
SER
140
B
PHE
141
n
141
PHE
141
B
THR
142
n
142
THR
142
B
ALA
143
n
143
ALA
143
B
ARG
144
n
144
ARG
144
B
GLY
145
n
145
GLY
145
B
GLY
146
n
146
GLY
146
B
SER
147
n
147
SER
147
B
TYR
148
n
148
TYR
148
B
ILE
149
n
149
ILE
149
B
TYR
150
n
150
TYR
150
B
SER
151
n
151
SER
151
B
SER
152
n
152
SER
152
B
GLU
153
n
153
GLU
153
B
GLU
154
n
154
GLU
154
B
GLY
155
n
155
GLY
155
B
PHE
156
n
156
PHE
156
B
ARG
157
n
157
ARG
157
B
ASP
158
n
158
ASP
158
B
ASP
159
n
159
ASP
159
B
ILE
160
n
160
ILE
160
B
GLY
161
n
161
GLY
161
B
SER
162
n
162
SER
162
B
PHE
163
n
163
PHE
163
B
PRO
164
n
164
PRO
164
B
ASN
165
n
165
ASN
165
B
GLY
166
n
166
GLY
166
B
GLU
167
n
167
GLU
167
B
ARG
168
n
168
ARG
168
B
ALA
169
n
169
ALA
169
B
ILE
170
n
170
ILE
170
B
GLY
171
n
171
GLY
171
B
TYR
172
n
172
TYR
172
B
LYS
173
n
173
LYS
173
B
GLN
174
n
174
GLN
174
B
ARG
175
n
175
ARG
175
B
PHE
176
n
176
PHE
176
B
LYS
177
n
177
LYS
177
B
MET
178
n
178
MET
178
B
PRO
179
n
179
PRO
179
B
TYR
180
n
180
TYR
180
B
ILE
181
n
181
ILE
181
B
GLY
182
n
182
GLY
182
B
LEU
183
n
183
LEU
183
B
THR
184
n
184
THR
184
B
GLY
185
n
185
GLY
185
B
SER
186
n
186
SER
186
B
TYR
187
n
187
TYR
187
B
ARG
188
n
188
ARG
188
B
TYR
189
n
189
TYR
189
B
GLU
190
n
190
GLU
190
B
ASP
191
n
191
ASP
191
B
PHE
192
n
192
PHE
192
B
GLU
193
n
193
GLU
193
B
LEU
194
n
194
LEU
194
B
GLY
195
n
195
GLY
195
B
GLY
196
n
196
GLY
196
B
THR
197
n
197
THR
197
B
PHE
198
n
198
PHE
198
B
LYS
199
n
199
LYS
199
B
TYR
200
n
200
TYR
200
B
SER
201
n
201
SER
201
B
GLY
202
n
202
GLY
202
B
TRP
203
n
203
TRP
203
B
VAL
204
n
204
VAL
204
B
GLU
205
n
205
GLU
205
B
SER
206
n
206
SER
206
B
SER
207
n
207
SER
207
B
ASP
208
n
208
ASP
208
B
ASN
209
n
209
ASN
209
B
ASP
210
n
210
ASP
210
B
GLU
211
n
211
GLU
211
B
HIS
212
n
212
HIS
212
B
TYR
213
n
213
TYR
213
B
ASP
214
n
214
ASP
214
B
PRO
215
n
215
PRO
215
B
LYS
216
n
216
LYS
216
B
GLY
217
n
217
GLY
217
B
ARG
218
n
218
ARG
218
B
ILE
219
n
219
ILE
219
B
THR
220
n
220
THR
220
B
TYR
221
n
221
TYR
221
B
ARG
222
n
222
ARG
222
B
SER
223
n
223
SER
223
B
LYS
224
n
224
LYS
224
B
VAL
225
n
225
VAL
225
B
LYS
226
n
226
LYS
226
B
ASP
227
n
227
ASP
227
B
GLN
228
n
228
GLN
228
B
ASN
229
n
229
ASN
229
B
TYR
230
n
230
TYR
230
B
TYR
231
n
231
TYR
231
B
SER
232
n
232
SER
232
B
VAL
233
n
233
VAL
233
B
ALA
234
n
234
ALA
234
B
VAL
235
n
235
VAL
235
B
ASN
236
n
236
ASN
236
B
ALA
237
n
237
ALA
237
B
GLY
238
n
238
GLY
238
B
TYR
239
n
239
TYR
239
B
TYR
240
n
240
TYR
240
B
VAL
241
n
241
VAL
241
B
THR
242
n
242
THR
242
B
PRO
243
n
243
PRO
243
B
ASN
244
n
244
ASN
244
B
ALA
245
n
245
ALA
245
B
LYS
246
n
246
LYS
246
B
VAL
247
n
247
VAL
247
B
TYR
248
n
248
TYR
248
B
VAL
249
n
249
VAL
249
B
GLU
250
n
250
GLU
250
B
GLY
251
n
251
GLY
251
B
ALA
252
n
252
ALA
252
B
TRP
253
n
253
TRP
253
B
ASN
254
n
254
ASN
254
B
ARG
255
n
255
ARG
255
B
VAL
256
n
256
VAL
256
B
THR
257
n
257
THR
257
B
ASN
258
n
258
ASN
258
B
LYS
259
n
259
LYS
259
B
LYS
260
n
260
LYS
260
B
GLY
261
n
261
GLY
261
B
ASN
262
n
262
ASN
262
B
THR
263
n
263
THR
263
B
SER
264
n
264
SER
264
B
LEU
265
n
265
LEU
265
B
ALA
266
n
266
TYR
266
B
ASP
267
n
267
ASP
267
B
HIS
268
n
268
HIS
268
B
ASN
269
n
269
ASN
269
B
ASN
270
n
270
ASN
270
B
ASN
271
n
271
ASN
271
B
THR
272
n
272
THR
272
B
SER
273
n
273
SER
273
B
ASP
274
n
274
ASP
274
B
TYR
275
n
275
TYR
275
B
SER
276
n
276
SER
276
B
LYS
277
n
277
LYS
277
B
ASN
278
n
278
ASN
278
B
GLY
279
n
279
GLY
279
B
ALA
280
n
280
ALA
280
B
GLY
281
n
281
GLY
281
B
ILE
282
n
282
ILE
282
B
GLU
283
n
283
GLU
283
B
ASN
284
n
284
ASN
284
B
TYR
285
n
285
TYR
285
B
ASN
286
n
286
ASN
286
B
PHE
287
n
287
PHE
287
B
ILE
288
n
288
ILE
288
B
THR
289
n
289
THR
289
B
THR
290
n
290
THR
290
B
ALA
291
n
291
ALA
291
B
GLY
292
n
292
GLY
292
B
LEU
293
n
293
LEU
293
B
LYS
294
n
294
LYS
294
B
TYR
295
n
295
TYR
295
B
THR
296
n
296
THR
296
B
PHE
297
n
297
PHE
297
B
author_and_software_defined_assembly
PQS
1
monomeric
author_and_software_defined_assembly
PQS
1
monomeric
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
2950
-37
28490
3260
-27
28180
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_665
x-y+1,-y+1,-z+1/3
crystal symmetry operation
49.1945000000
85.2073734529
55.2316666667
A
O
ILE
149
A
O
ILE
149
A
N
GLU
98
A
N
GLU
98
A
N
LEU
120
A
N
LEU
120
A
O
LEU
128
A
O
LEU
128
A
N
ALA
143
A
N
ALA
143
A
O
ILE
170
A
O
ILE
170
A
O
TYR
189
A
O
TYR
189
A
N
PHE
192
A
N
PHE
192
A
N
HIS
212
A
N
HIS
212
A
O
ILE
219
A
O
ILE
219
A
N
VAL
241
A
N
VAL
241
A
O
ALA
245
A
O
ALA
245
A
N
ASP
267
A
N
ASP
267
A
O
THR
272
A
O
THR
272
A
O
TYR
295
A
O
TYR
295
A
N
ALA
14
A
N
ALA
14
A
N
LEU
31
A
N
LEU
31
A
O
ARG
37
A
O
ARG
37
A
N
TRP
58
A
N
TRP
58
A
O
ILE
66
A
O
ILE
66
A
N
THR
73
A
N
THR
73
A
O
ALA
109
A
O
ALA
109
A
N
LEU
106
A
N
LEU
106
A
O
ARG
77
A
O
ARG
77
A
N
GLN
84
A
N
GLN
84
A
O
GLN
41
A
O
GLN
41
B
N
GLY
161
B
N
GLY
161
B
O
TYR
148
B
O
TYR
148
B
N
ILE
149
B
N
ILE
149
B
O
GLU
98
B
O
GLU
98
B
O
ALA
99
B
O
ALA
99
B
N
ASP
83
B
N
ASP
83
B
N
GLN
84
B
N
GLN
84
B
O
GLN
41
B
O
GLN
41
B
O
TRP
58
B
O
TRP
58
B
N
ILE
66
B
N
ILE
66
B
N
THR
73
B
N
THR
73
B
O
ALA
109
B
O
ALA
109
B
N
LEU
106
B
N
LEU
106
B
O
ARG
77
B
O
ARG
77
B
N
GLN
84
B
N
GLN
84
B
O
GLN
41
B
O
GLN
41
B
O
ASN
57
B
O
ASN
57
B
N
ASN
13
B
N
ASN
13
B
N
TYR
30
B
N
TYR
30
B
O
GLY
279
B
O
GLY
279
B
N
LYS
294
B
N
LYS
294
B
O
LYS
246
B
O
LYS
246
B
N
TYR
266
B
N
TYR
266
B
O
THR
220
B
O
THR
220
B
O
GLY
238
B
O
GLY
238
B
N
GLU
193
B
N
GLU
193
B
O
GLU
211
B
O
GLU
211
B
N
GLY
171
B
N
GLY
171
B
N
SER
186
B
N
SER
186
B
O
ARG
127
B
O
ARG
127
B
O
THR
142
B
O
THR
142
B
N
GLN
105
B
N
GLN
105
1
A
CG
GLU
3
A
CG
GLU
3
1
Y
1
A
CD
GLU
3
A
CD
GLU
3
1
Y
1
A
OE1
GLU
3
A
OE1
GLU
3
1
Y
1
A
OE2
GLU
3
A
OE2
GLU
3
1
Y
1
A
OG1
THR
4
A
OG1
THR
4
1
Y
1
A
CG2
THR
4
A
CG2
THR
4
1
Y
1
A
CG
GLU
154
A
CG
GLU
154
1
Y
1
A
CD
GLU
154
A
CD
GLU
154
1
Y
1
A
OE1
GLU
154
A
OE1
GLU
154
1
Y
1
A
OE2
GLU
154
A
OE2
GLU
154
1
Y
1
A
CG
GLU
167
A
CG
GLU
167
1
Y
1
A
CD
GLU
167
A
CD
GLU
167
1
Y
1
A
OE1
GLU
167
A
OE1
GLU
167
1
Y
1
A
OE2
GLU
167
A
OE2
GLU
167
1
Y
1
A
CG
ARG
168
A
CG
ARG
168
1
Y
1
A
CD
ARG
168
A
CD
ARG
168
1
Y
1
A
NE
ARG
168
A
NE
ARG
168
1
Y
1
A
CZ
ARG
168
A
CZ
ARG
168
1
Y
1
A
NH1
ARG
168
A
NH1
ARG
168
1
Y
1
A
NH2
ARG
168
A
NH2
ARG
168
1
Y
1
A
CG
LYS
216
A
CG
LYS
216
1
Y
1
A
CD
LYS
216
A
CD
LYS
216
1
Y
1
A
CE
LYS
216
A
CE
LYS
216
1
Y
1
A
NZ
LYS
216
A
NZ
LYS
216
1
Y
1
A
CG
TYR
266
A
CG
TYR
266
1
Y
1
A
CD1
TYR
266
A
CD1
TYR
266
1
Y
1
A
CD2
TYR
266
A
CD2
TYR
266
1
Y
1
A
CE1
TYR
266
A
CE1
TYR
266
1
Y
1
A
CE2
TYR
266
A
CE2
TYR
266
1
Y
1
A
CZ
TYR
266
A
CZ
TYR
266
1
Y
1
A
OH
TYR
266
A
OH
TYR
266
1
Y
1
B
CG
GLU
33
B
CG
GLU
33
1
Y
1
B
CD
GLU
33
B
CD
GLU
33
1
Y
1
B
OE1
GLU
33
B
OE1
GLU
33
1
Y
1
B
OE2
GLU
33
B
OE2
GLU
33
1
Y
1
B
CG
GLU
154
B
CG
GLU
154
1
Y
1
B
CD
GLU
154
B
CD
GLU
154
1
Y
1
B
OE1
GLU
154
B
OE1
GLU
154
1
Y
1
B
OE2
GLU
154
B
OE2
GLU
154
1
Y
1
B
CG
LYS
216
B
CG
LYS
216
1
Y
1
B
CD
LYS
216
B
CD
LYS
216
1
Y
1
B
CE
LYS
216
B
CE
LYS
216
1
Y
1
B
NZ
LYS
216
B
NZ
LYS
216
1
Y
1
B
CG
TYR
266
B
CG
TYR
266
1
Y
1
B
CD1
TYR
266
B
CD1
TYR
266
1
Y
1
B
CD2
TYR
266
B
CD2
TYR
266
1
Y
1
B
CE1
TYR
266
B
CE1
TYR
266
1
Y
1
B
CE2
TYR
266
B
CE2
TYR
266
1
Y
1
B
CZ
TYR
266
B
CZ
TYR
266
1
Y
1
B
OH
TYR
266
B
OH
TYR
266
1
Y
1
B
OG
SER
276
B
OG
SER
276
1
Y
1
B
SER
1
B
SER
1
1
Y
1
B
THR
2
B
THR
2
1
Y
1
B
GLU
3
B
GLU
3
1
Y
1
B
THR
4
B
THR
4
1
Y
1
B
LEU
5
B
LEU
5
1
Y
1
B
SER
6
B
SER
6
1
Y
1
B
PHE
7
B
PHE
7
1
Y
1
B
THR
8
B
THR
8
1
Y
1
B
PRO
9
B
PRO
9
1
Y
1
B
ASP
10
B
ASP
10
1
Y
1
A
PRO
9
-57.42
-3.78
1
A
GLU
34
168.40
38.21
1
A
ASN
48
39.59
50.20
1
A
ASN
91
-141.25
45.77
1
A
ILE
149
-156.20
71.41
1
A
ASN
165
-52.52
99.22
1
A
GLU
167
-70.88
-142.13
1
A
ARG
168
-8.48
109.55
1
A
GLU
190
65.74
-116.25
1
A
ASP
214
168.77
112.69
1
A
PRO
215
-55.52
1.29
1
A
LYS
216
-105.42
-61.35
1
B
GLU
33
-59.10
1.97
1
B
PHE
46
-172.35
149.46
1
B
ASN
91
-162.09
74.40
1
B
ASN
122
-151.34
76.89
1
B
PRO
124
-26.32
-38.99
1
B
PRO
164
-64.12
99.67
1
B
ASN
165
-28.03
134.70
1
B
GLU
167
-108.60
-157.69
1
B
GLU
190
70.92
-111.60
1
B
LYS
216
-71.87
30.39
1
B
TYR
266
-148.40
43.00
1
B
ASP
267
-35.80
119.59
1
B
ASN
270
-97.61
39.16
1
B
ASN
271
14.63
61.44
53.0
-0.02
-0.02
0.04
0.74
0.00
0.00
0.2800000
0.2380000
2.6
20
1407
27389
27389
94.2
RANDOM
1
Isotropic
THROUGHOUT
SAD
Engh & Huber
0.44
0.35
5.00
0.49
0.41
2.6
20
29
4734
96
0
4609
0.007
1.4
26.5
0.78
0.3600000
0.022
0.3180000
2.76
270
4314
96.1
41.0
2.6
20
1I78
29075
27400
0.0740000
1
8.82
1.59
94.3
0.2630000
2.6
2.76
2.54
2766
1
1.57
96.1
phasing
MLPHARE
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF OUTER MEMBRANE PROTEASE OMPT FROM ESCHERICHIA COLI
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
2
N
N
2
N
N
4
N
N
4
N
N
OmpT is active as a monomer. The assymetric unit contains two monomers.
B
ALA
32
B
ALA
32
HELX_P
B
GLY
35
B
GLY
35
5
1
4
B
ASP
214
B
ASP
214
HELX_P
B
ARG
218
B
ARG
218
5
2
5
HYDROLASE
integral outer membrane protein, protease, beta barrel, HYDROLASE
OMPT_ECOLI
UNP
1
1
P09169
MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGKTKERVYLAEEGGRKVSQLDWKFNNAAIIKGAINWDL
MPQISIGAAGWTTLGSRGGNMVDQDWMDSSNPGTWTDESRHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYS
FTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTFKYSGWVESSDNDEHYDPGKRIT
YRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRVTNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF
21
317
1I78
1
297
P09169
A
1
1
297
21
317
1I78
1
297
P09169
B
1
1
297
1
SER
engineered mutation
ALA
99
1I78
A
P09169
UNP
119
99
1
GLY
engineered mutation
LYS
216
1I78
A
P09169
UNP
236
216
1
LYS
engineered mutation
GLY
217
1I78
A
P09169
UNP
237
217
2
SER
engineered mutation
ALA
99
1I78
B
P09169
UNP
119
99
2
GLY
engineered mutation
LYS
216
1I78
B
P09169
UNP
236
216
2
LYS
engineered mutation
GLY
217
1I78
B
P09169
UNP
237
217
14
17
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
147
A
SER
147
A
ILE
149
A
ILE
149
A
ASP
97
A
ASP
97
A
ASN
122
A
ASN
122
A
TYR
126
A
TYR
126
A
ARG
144
A
ARG
144
A
ALA
169
A
ALA
169
A
TYR
189
A
TYR
189
A
PHE
192
A
PHE
192
A
TYR
213
A
TYR
213
A
ILE
219
A
ILE
219
A
THR
242
A
THR
242
A
ALA
245
A
ALA
245
A
ASP
267
A
ASP
267
A
THR
272
A
THR
272
A
THR
296
A
THR
296
A
ILE
12
A
ILE
12
A
LEU
31
A
LEU
31
A
ARG
37
A
ARG
37
A
TRP
58
A
TRP
58
A
ILE
64
A
ILE
64
A
THR
73
A
THR
73
A
ASP
97
A
ASP
97
A
ASN
122
A
ASN
122
A
ARG
77
A
ARG
77
A
ASP
85
A
ASP
85
A
ARG
37
A
ARG
37
A
TRP
58
A
TRP
58
B
ASP
159
B
ASP
159
B
SER
162
B
SER
162
B
SER
147
B
SER
147
B
TYR
150
B
TYR
150
B
ASP
97
B
ASP
97
B
ARG
100
B
ARG
100
B
ARG
77
B
ARG
77
B
ASP
85
B
ASP
85
B
LYS
38
B
LYS
38
B
ASP
59
B
ASP
59
B
ILE
64
B
ILE
64
B
THR
73
B
THR
73
B
THR
104
B
THR
104
B
GLU
123
B
GLU
123
B
ARG
77
B
ARG
77
B
ASP
85
B
ASP
85
B
LYS
38
B
LYS
38
B
ASP
59
B
ASP
59
B
ILE
12
B
ILE
12
B
TYR
30
B
TYR
30
B
THR
272
B
THR
272
B
PHE
297
B
PHE
297
B
ALA
245
B
ALA
245
B
ASP
267
B
ASP
267
B
ILE
219
B
ILE
219
B
TYR
240
B
TYR
240
B
PHE
192
B
PHE
192
B
HIS
212
B
HIS
212
B
ILE
170
B
ILE
170
B
TYR
189
B
TYR
189
B
TYR
126
B
TYR
126
B
ALA
143
B
ALA
143
B
THR
104
B
THR
104
B
GLU
123
B
GLU
123
154
P 32 2 1