0.010303 0.000000 0.002806 0.000000 0.021979 0.000000 0.000000 0.000000 0.014366 0.00000 0.00000 0.00000 Tolbert, W.D. Ekstrom, J.L. Mathews, I.I. Secrist III, J.A. Pegg, A.E. Ealick, S.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 105.24 90.00 97.057 45.499 72.143 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H12 N8 184.202 METHYLGLYOXAL BIS-(GUANYLHYDRAZONE) non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H12 N2 88.151 1,4-DIAMINOBUTANE PUTRESCINE non-polymer C3 H4 O3 88.062 PYRUVIC ACID non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 N N N 252 N C N 253 N N N 254 N N N 255 N C N 256 N C N 257 N C N 258 N N N 259 N N N 260 N C N 261 N N N 262 N N N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C Y 284 N C Y 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N C N 334 N O N 335 N O N 336 N C N 337 N O N 338 N C N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N O N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 R C N 362 N O N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N N Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C N 412 N O N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N N N 426 S C N 427 N C N 428 N O N 429 N C N 430 N C N 431 N C N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 E doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing Y 272 N doub Y 273 N sing Y 274 N sing N 275 N sing Y 276 N doub N 277 N sing Y 278 N doub N 279 N sing Y 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N doub N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N sing Y 376 N doub N 377 N sing Y 378 N doub N 379 N sing Y 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N doub N 400 N sing Y 401 N doub N 402 N sing Y 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing US Biochemistry BICHAW 0033 0006-2960 40 9484 9494 10.1021/bi010735w 11583147 The structural basis for substrate specificity and inhibition of human S-adenosylmethionine decarboxylase. 2001 UK Structure STRUE6 2005 0969-2126 7 583 595 10.1016/S0969-2126(99)80074-4 The Crystal Structure of Human S-adenosylmethionine Decarboxylase at 2.25 A Resolution Reveals a Novel Fold 1999 10.2210/pdb1i7c/pdb pdb_00001i7c 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 291 1 mirrors CCD 1998-06-03 BRUKER mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE BRUKER 7694.577 S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN 4.1.1.50 1 man polymer 30671.965 S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN 4.1.1.50 1 man polymer 88.151 1,4-DIAMINOBUTANE 1 syn non-polymer 184.202 METHYLGLYOXAL BIS-(GUANYLHYDRAZONE) 1 syn non-polymer 18.015 water 66 nat water no no MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE B polypeptide(L) no yes (PYR)SMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPN GAGYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMF NPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIE GFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS XSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGY CMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCG YSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKR LDCQSAMFNDYNFVFTSFAKKQQQQQS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 2.00 38.59 VAPOR DIFFUSION, HANGING DROP 8.0 PEG 8000, Tris-HCl pH 8.0, dithiothreitol, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 citation_author citation_author atom_site chem_comp_atom chem_comp_bond database_2 struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Database references Database references Atomic model Data collection Database references Derived calculations 1 0 2001-08-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-24 1 4 2018-01-31 2 0 2023-11-15 _citation_author.name _citation_author.name _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id S-adenosylmethionine decarboxylase, 5'-DEOXY-5'-[N-METHYL-N-(2-AMINOOXYETHYL) AMINO]ADENOSINE bound to PVL S-adenosylmethionine decarboxylase, 5'-deoxy-5'-[(3-hydrazinopropyl)methylamino]adenosine bound to PVL S-adenosylmethionine decarboxylase, S-adenosylmethionine methyl ester bound to PVL S-adenosylmethionine decarboxylase, 4-AMIDINOINDAN-1-ONE-2'-AMIDINOHYDRAZONE RCSB Y RCSB 2001-03-08 REL REL PUT 1,4-DIAMINOBUTANE MGB METHYLGLYOXAL BIS-(GUANYLHYDRAZONE) HOH water PUT 350 3 PUT PUT 350 A MGB 375 4 MGB MGB 375 A HOH 404 5 HOH HOH 404 B HOH 411 5 HOH HOH 411 B HOH 418 5 HOH HOH 418 B HOH 423 5 HOH HOH 423 B HOH 430 5 HOH HOH 430 B HOH 436 5 HOH HOH 436 B HOH 438 5 HOH HOH 438 B HOH 439 5 HOH HOH 439 B HOH 442 5 HOH HOH 442 B HOH 443 5 HOH HOH 443 B HOH 458 5 HOH HOH 458 B HOH 461 5 HOH HOH 461 B HOH 463 5 HOH HOH 463 B HOH 465 5 HOH HOH 465 B HOH 401 5 HOH HOH 401 A HOH 402 5 HOH HOH 402 A HOH 403 5 HOH HOH 403 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 410 5 HOH HOH 410 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 424 5 HOH HOH 424 A HOH 425 5 HOH HOH 425 A HOH 426 5 HOH HOH 426 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 431 5 HOH HOH 431 A HOH 432 5 HOH HOH 432 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 435 5 HOH HOH 435 A HOH 437 5 HOH HOH 437 A HOH 440 5 HOH HOH 440 A HOH 441 5 HOH HOH 441 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 446 5 HOH HOH 446 A HOH 447 5 HOH HOH 447 A HOH 448 5 HOH HOH 448 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 451 5 HOH HOH 451 A HOH 452 5 HOH HOH 452 A HOH 453 5 HOH HOH 453 A HOH 454 5 HOH HOH 454 A HOH 455 5 HOH HOH 455 A HOH 456 5 HOH HOH 456 A HOH 457 5 HOH HOH 457 A HOH 459 5 HOH HOH 459 A HOH 460 5 HOH HOH 460 A HOH 462 5 HOH HOH 462 A HOH 464 5 HOH HOH 464 A HOH 466 5 HOH HOH 466 A n 1 1 B n 2 2 B n 3 3 B ALA 4 n 4 ALA 4 B HIS 5 n 5 HIS 5 B PHE 6 n 6 PHE 6 B PHE 7 n 7 PHE 7 B GLU 8 n 8 GLU 8 B GLY 9 n 9 GLY 9 B THR 10 n 10 THR 10 B GLU 11 n 11 GLU 11 B LYS 12 n 12 LYS 12 B LEU 13 n 13 LEU 13 B LEU 14 n 14 LEU 14 B GLU 15 n 15 GLU 15 B VAL 16 n 16 VAL 16 B TRP 17 n 17 TRP 17 B PHE 18 n 18 PHE 18 B SER 19 n 19 SER 19 B ARG 20 n 20 ARG 20 B GLN 21 n 21 GLN 21 B GLN 22 n 22 GLN 22 B PRO 23 n 23 PRO 23 B n 24 24 B n 25 25 B n 26 26 B GLN 27 n 27 GLN 27 B GLY 28 n 28 GLY 28 B SER 29 n 29 SER 29 B GLY 30 n 30 GLY 30 B ASP 31 n 31 ASP 31 B LEU 32 n 32 LEU 32 B ARG 33 n 33 ARG 33 B THR 34 n 34 THR 34 B ILE 35 n 35 ILE 35 B PRO 36 n 36 PRO 36 B ARG 37 n 37 ARG 37 B SER 38 n 38 SER 38 B GLU 39 n 39 GLU 39 B TRP 40 n 40 TRP 40 B ASP 41 n 41 ASP 41 B ILE 42 n 42 ILE 42 B LEU 43 n 43 LEU 43 B LEU 44 n 44 LEU 44 B LYS 45 n 45 LYS 45 B ASP 46 n 46 ASP 46 B VAL 47 n 47 VAL 47 B GLN 48 n 48 GLN 48 B CYS 49 n 49 CYS 49 B SER 50 n 50 SER 50 B ILE 51 n 51 ILE 51 B ILE 52 n 52 ILE 52 B SER 53 n 53 SER 53 B VAL 54 n 54 VAL 54 B THR 55 n 55 THR 55 B LYS 56 n 56 LYS 56 B THR 57 n 57 THR 57 B ASP 58 n 58 ASP 58 B LYS 59 n 59 LYS 59 B GLN 60 n 60 GLN 60 B GLU 61 n 61 GLU 61 B ALA 62 n 62 ALA 62 B TYR 63 n 63 TYR 63 B VAL 64 n 64 VAL 64 B LEU 65 n 65 LEU 65 B SER 66 n 66 SER 66 B GLU 67 n 67 GLU 67 B PVL 68 n 1 PYR 68 A SER 69 n 2 SER 69 A MET 70 n 3 MET 70 A PHE 71 n 4 PHE 71 A VAL 72 n 5 VAL 72 A SER 73 n 6 SER 73 A LYS 74 n 7 LYS 74 A ARG 75 n 8 ARG 75 A ARG 76 n 9 ARG 76 A PHE 77 n 10 PHE 77 A ILE 78 n 11 ILE 78 A LEU 79 n 12 LEU 79 A LYS 80 n 13 LYS 80 A THR 81 n 14 THR 81 A CYS 82 n 15 CYS 82 A GLY 83 n 16 GLY 83 A THR 84 n 17 THR 84 A THR 85 n 18 THR 85 A LEU 86 n 19 LEU 86 A LEU 87 n 20 LEU 87 A LEU 88 n 21 LEU 88 A LYS 89 n 22 LYS 89 A ALA 90 n 23 ALA 90 A LEU 91 n 24 LEU 91 A VAL 92 n 25 VAL 92 A PRO 93 n 26 PRO 93 A LEU 94 n 27 LEU 94 A LEU 95 n 28 LEU 95 A LYS 96 n 29 LYS 96 A LEU 97 n 30 LEU 97 A ALA 98 n 31 ALA 98 A ARG 99 n 32 ARG 99 A ASP 100 n 33 ASP 100 A TYR 101 n 34 TYR 101 A SER 102 n 35 SER 102 A GLY 103 n 36 GLY 103 A PHE 104 n 37 PHE 104 A ASP 105 n 38 ASP 105 A SER 106 n 39 SER 106 A ILE 107 n 40 ILE 107 A GLN 108 n 41 GLN 108 A SER 109 n 42 SER 109 A PHE 110 n 43 PHE 110 A PHE 111 n 44 PHE 111 A TYR 112 n 45 TYR 112 A SER 113 n 46 SER 113 A ARG 114 n 47 ARG 114 A LYS 115 n 48 LYS 115 A ASN 116 n 49 ASN 116 A PHE 117 n 50 PHE 117 A MET 118 n 51 MET 118 A LYS 119 n 52 LYS 119 A PRO 120 n 53 PRO 120 A SER 121 n 54 SER 121 A HIS 122 n 55 HIS 122 A GLN 123 n 56 GLN 123 A GLY 124 n 57 GLY 124 A TYR 125 n 58 TYR 125 A PRO 126 n 59 PRO 126 A HIS 127 n 60 HIS 127 A ARG 128 n 61 ARG 128 A ASN 129 n 62 ASN 129 A PHE 130 n 63 PHE 130 A GLN 131 n 64 GLN 131 A GLU 132 n 65 GLU 132 A GLU 133 n 66 GLU 133 A ILE 134 n 67 ILE 134 A GLU 135 n 68 GLU 135 A PHE 136 n 69 PHE 136 A LEU 137 n 70 LEU 137 A ASN 138 n 71 ASN 138 A ALA 139 n 72 ALA 139 A ILE 140 n 73 ILE 140 A PHE 141 n 74 PHE 141 A PRO 142 n 75 PRO 142 A ASN 143 n 76 ASN 143 A GLY 144 n 77 GLY 144 A ALA 145 n 78 ALA 145 A GLY 146 n 79 GLY 146 A TYR 147 n 80 TYR 147 A CYS 148 n 81 CYS 148 A MET 149 n 82 MET 149 A GLY 150 n 83 GLY 150 A ARG 151 n 84 ARG 151 A MET 152 n 85 MET 152 A ASN 153 n 86 ASN 153 A SER 154 n 87 SER 154 A ASP 155 n 88 ASP 155 A CYS 156 n 89 CYS 156 A TRP 157 n 90 TRP 157 A TYR 158 n 91 TYR 158 A LEU 159 n 92 LEU 159 A TYR 160 n 93 TYR 160 A THR 161 n 94 THR 161 A LEU 162 n 95 LEU 162 A ASP 163 n 96 ASP 163 A PHE 164 n 97 PHE 164 A PRO 165 n 98 PRO 165 A GLU 166 n 99 GLU 166 A SER 167 n 100 SER 167 A ARG 168 n 101 ARG 168 A VAL 169 n 102 VAL 169 A ILE 170 n 103 ILE 170 A SER 171 n 104 SER 171 A GLN 172 n 105 GLN 172 A PRO 173 n 106 PRO 173 A ASP 174 n 107 ASP 174 A GLN 175 n 108 GLN 175 A THR 176 n 109 THR 176 A LEU 177 n 110 LEU 177 A GLU 178 n 111 GLU 178 A ILE 179 n 112 ILE 179 A LEU 180 n 113 LEU 180 A MET 181 n 114 MET 181 A SER 182 n 115 SER 182 A GLU 183 n 116 GLU 183 A LEU 184 n 117 LEU 184 A ASP 185 n 118 ASP 185 A PRO 186 n 119 PRO 186 A ALA 187 n 120 ALA 187 A VAL 188 n 121 VAL 188 A MET 189 n 122 MET 189 A ASP 190 n 123 ASP 190 A GLN 191 n 124 GLN 191 A PHE 192 n 125 PHE 192 A TYR 193 n 126 TYR 193 A MET 194 n 127 MET 194 A LYS 195 n 128 LYS 195 A ASP 196 n 129 ASP 196 A GLY 197 n 130 GLY 197 A VAL 198 n 131 VAL 198 A THR 199 n 132 THR 199 A ALA 200 n 133 ALA 200 A LYS 201 n 134 LYS 201 A ASP 202 n 135 ASP 202 A VAL 203 n 136 VAL 203 A THR 204 n 137 THR 204 A ARG 205 n 138 ARG 205 A GLU 206 n 139 GLU 206 A SER 207 n 140 SER 207 A GLY 208 n 141 GLY 208 A ILE 209 n 142 ILE 209 A ARG 210 n 143 ARG 210 A ASP 211 n 144 ASP 211 A LEU 212 n 145 LEU 212 A ILE 213 n 146 ILE 213 A PRO 214 n 147 PRO 214 A GLY 215 n 148 GLY 215 A SER 216 n 149 SER 216 A VAL 217 n 150 VAL 217 A ILE 218 n 151 ILE 218 A ASP 219 n 152 ASP 219 A ALA 220 n 153 ALA 220 A THR 221 n 154 THR 221 A MET 222 n 155 MET 222 A PHE 223 n 156 PHE 223 A ASN 224 n 157 ASN 224 A PRO 225 n 158 PRO 225 A CYS 226 n 159 CYS 226 A GLY 227 n 160 GLY 227 A TYR 228 n 161 TYR 228 A SER 229 n 162 SER 229 A MET 230 n 163 MET 230 A ASN 231 n 164 ASN 231 A GLY 232 n 165 GLY 232 A MET 233 n 166 MET 233 A LYS 234 n 167 LYS 234 A SER 235 n 168 SER 235 A ASP 236 n 169 ASP 236 A GLY 237 n 170 GLY 237 A THR 238 n 171 THR 238 A TYR 239 n 172 TYR 239 A TRP 240 n 173 TRP 240 A THR 241 n 174 THR 241 A ILE 242 n 175 ILE 242 A HIS 243 n 176 HIS 243 A ILE 244 n 177 ILE 244 A THR 245 n 178 THR 245 A PRO 246 n 179 PRO 246 A GLU 247 n 180 GLU 247 A PRO 248 n 181 PRO 248 A GLU 249 n 182 GLU 249 A PHE 250 n 183 PHE 250 A SER 251 n 184 SER 251 A TYR 252 n 185 TYR 252 A VAL 253 n 186 VAL 253 A SER 254 n 187 SER 254 A PHE 255 n 188 PHE 255 A GLU 256 n 189 GLU 256 A THR 257 n 190 THR 257 A ASN 258 n 191 ASN 258 A LEU 259 n 192 LEU 259 A SER 260 n 193 SER 260 A GLN 261 n 194 GLN 261 A THR 262 n 195 THR 262 A SER 263 n 196 SER 263 A TYR 264 n 197 TYR 264 A ASP 265 n 198 ASP 265 A ASP 266 n 199 ASP 266 A LEU 267 n 200 LEU 267 A ILE 268 n 201 ILE 268 A ARG 269 n 202 ARG 269 A LYS 270 n 203 LYS 270 A VAL 271 n 204 VAL 271 A VAL 272 n 205 VAL 272 A GLU 273 n 206 GLU 273 A VAL 274 n 207 VAL 274 A PHE 275 n 208 PHE 275 A LYS 276 n 209 LYS 276 A PRO 277 n 210 PRO 277 A GLY 278 n 211 GLY 278 A LYS 279 n 212 LYS 279 A PHE 280 n 213 PHE 280 A VAL 281 n 214 VAL 281 A THR 282 n 215 THR 282 A THR 283 n 216 THR 283 A LEU 284 n 217 LEU 284 A PHE 285 n 218 PHE 285 A VAL 286 n 219 VAL 286 A ASN 287 n 220 ASN 287 A GLN 288 n 221 GLN 288 A SER 289 n 222 SER 289 A n 223 290 A n 224 291 A n 225 292 A n 226 293 A THR 294 n 227 THR 294 A VAL 295 n 228 VAL 295 A LEU 296 n 229 LEU 296 A ALA 297 n 230 ALA 297 A SER 298 n 231 SER 298 A PRO 299 n 232 PRO 299 A GLN 300 n 233 GLN 300 A LYS 301 n 234 LYS 301 A ILE 302 n 235 ILE 302 A GLU 303 n 236 GLU 303 A GLY 304 n 237 GLY 304 A PHE 305 n 238 PHE 305 A LYS 306 n 239 LYS 306 A ARG 307 n 240 ARG 307 A LEU 308 n 241 LEU 308 A ASP 309 n 242 ASP 309 A CYS 310 n 243 CYS 310 A GLN 311 n 244 GLN 311 A SER 312 n 245 SER 312 A ALA 313 n 246 ALA 313 A MET 314 n 247 MET 314 A PHE 315 n 248 PHE 315 A ASN 316 n 249 ASN 316 A ASP 317 n 250 ASP 317 A TYR 318 n 251 TYR 318 A ASN 319 n 252 ASN 319 A PHE 320 n 253 PHE 320 A VAL 321 n 254 VAL 321 A PHE 322 n 255 PHE 322 A THR 323 n 256 THR 323 A SER 324 n 257 SER 324 A PHE 325 n 258 PHE 325 A ALA 326 n 259 ALA 326 A LYS 327 n 260 LYS 327 A LYS 328 n 261 LYS 328 A GLN 329 n 262 GLN 329 A n 263 330 A n 264 331 A n 265 332 A n 266 333 A n 267 334 A author_and_software_defined_assembly PQS 4 tetrameric software_defined_assembly PISA 2 dimeric 7530 -36 14290 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_556 -x,y,-z+1 crystal symmetry operation -18.9637126612 0.0000000000 69.6059627554 B O THR 55 A O THR 55 B N ALA 62 A N ALA 62 B N TYR 63 A N TYR 63 A O MET 70 B O MET 3 A N PHE 71 B N PHE 4 A O ILE 78 B O ILE 11 A O THR 81 B O THR 14 B N LYS 12 A N LYS 12 B N SER 19 A N SER 19 A O SER 106 B O SER 39 A O ARG 114 B O ARG 47 A N TYR 158 B N TYR 91 A N THR 161 B N THR 94 A O ALA 145 B O ALA 78 A O THR 221 B O THR 154 A N SER 229 B N SER 162 A N GLY 232 B N GLY 165 A O TRP 240 B O TRP 173 A N THR 245 B N THR 178 A O TYR 252 B O TYR 185 A O THR 257 B O THR 190 A N LEU 177 B N LEU 110 A O SER 182 B O SER 115 A N GLY 278 B N GLY 211 A N VAL 286 B N VAL 219 A O ASN 319 B O ASN 252 A O ALA 326 B O ALA 259 A N LYS 306 B N LYS 239 1 B MET 1 A MET 1 1 Y 1 B GLU 2 A GLU 2 1 Y 1 B ALA 3 A ALA 3 1 Y 1 B ASP 24 A ASP 24 1 Y 1 B ALA 25 A ALA 25 1 Y 1 B ASN 26 A ASN 26 1 Y 1 A SER 290 B SER 223 1 Y 1 A LYS 291 B LYS 224 1 Y 1 A CYS 292 B CYS 225 1 Y 1 A ARG 293 B ARG 226 1 Y 1 A GLN 330 B GLN 263 1 Y 1 A GLN 331 B GLN 264 1 Y 1 A GLN 332 B GLN 265 1 Y 1 A GLN 333 B GLN 266 1 Y 1 A SER 334 B SER 267 1 Y 1 B GLN 21 -106.05 -67.92 1 B GLN 22 66.27 132.69 1 B GLN 48 76.65 41.41 1 A ARG 75 -146.08 19.91 1 A CYS 82 -127.00 -166.97 1 A LEU 86 -102.58 72.02 1 A ASN 143 -107.92 47.38 1 A ALA 145 -160.37 111.31 1 A SER 154 -176.15 -163.66 1 A GLU 166 -71.87 26.81 1 A SER 171 -77.61 -166.20 1 A PHE 250 -144.93 45.00 1 A GLN 288 -12.41 -73.51 1 A GLN 300 77.25 -32.36 1 A PHE 315 -102.94 -167.89 PROTEINMAO.PARAM PROTEINMAO.TOP ALL3.PARAM ALL3.TOP WATER.PARAM WATER.TOP 23.4 -4.83 0.00 -3.87 8.66 0.00 -3.83 0.249 0.008 0.176 2.40 40.93 995 12111 9625 10.3 79.4 RANDOM 45101.61 0.00 1 RESTRAINED THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 18.61 0.291 0.35 0.22 5.00 0.40 0.26 2.40 40.93 66 2661 19 0 2576 0.009 1.3 25.0 1.13 1.92 1.50 3.41 2.00 2.22 2.00 3.55 2.50 0.318 0.030 0.228 2.55 110 971 6 10.2 53.5 7.8 2.4 500.0 1I7C 12111 9618 0.0 0.0 0.065 1 8.17 3.9 79.4 0.084 2.4 2.486 2.04 1 3.96 63.73 refinement CNS data reduction SMART data scaling SAINT phasing CNS HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COMPLEXED WITH METHYLGLYOXAL BIS-(GUANYLHYDRAZONE) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N The native enzyme is a dimer generated by the crystallographic two-fold. B ASP 31 A ASP 31 HELX_P B ILE 35 A ILE 35 5 1 5 B PRO 36 A PRO 36 HELX_P B VAL 47 A VAL 47 1 2 12 A LEU 86 B LEU 19 HELX_P A LYS 89 B LYS 22 5 3 4 A ALA 90 B ALA 23 HELX_P A TYR 101 B TYR 34 1 4 12 A LYS 119 B LYS 52 HELX_P A GLN 123 B GLN 56 5 5 5 A ASN 129 B ASN 62 HELX_P A ALA 139 B ALA 72 1 6 11 A ASP 185 B ASP 118 HELX_P A GLN 191 B GLN 124 1 7 7 A THR 199 B THR 132 HELX_P A SER 207 B SER 140 1 8 9 A GLU 247 B GLU 180 HELX_P A PHE 250 B PHE 183 5 9 4 A TYR 264 B TYR 197 HELX_P A LYS 276 B LYS 209 1 10 13 covale 1.331 both A PYR 68 B C PYR 1 1_555 A SER 69 B N SER 2 1_555 LYASE Spermidine biosynthesis, Lyase, Decarboxylase, Pyruvate, S-ADENOSYLMETHIONINE, SANDWICH, ALLOSTERIC ENZYME, PYRUVOYL A TYR 125 B TYR 58 1 A PRO 126 B PRO 59 0.06 A ASN 224 B ASN 157 1 A PRO 225 B PRO 158 0.05 DCAM_HUMAN UNP 1 1 P17707 MEAAHFFEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE DCAM_HUMAN UNP 2 68 P17707 SSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGY CMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCG YSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKR LDCQSAMFNDYNFVFTSFAKKQQQQQS 1 67 1I7C 1 67 P17707 B 1 1 67 68 334 1I7C 68 334 P17707 A 2 1 267 2 SER SEE REMARK 999 PYR 68 1I7C A P17707 UNP 68 1 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B SER 50 A SER 50 B LYS 56 A LYS 56 B GLU 61 A GLU 61 B SER 66 A SER 66 A MET 70 B MET 3 A VAL 72 B VAL 5 A ARG 76 B ARG 9 A THR 81 B THR 14 B LYS 12 A LYS 12 B SER 19 A SER 19 A SER 106 B SER 39 A LYS 115 B LYS 48 A CYS 156 B CYS 89 A LEU 162 B LEU 95 A GLY 144 B GLY 77 A GLY 150 B GLY 83 A VAL 217 B VAL 150 A MET 222 B MET 155 A TYR 228 B TYR 161 A MET 233 B MET 166 A TYR 239 B TYR 172 A THR 245 B THR 178 A TYR 252 B TYR 185 A THR 257 B THR 190 A GLN 175 B GLN 108 A LEU 184 B LEU 117 A PRO 277 B PRO 210 A ASN 287 B ASN 220 A TYR 318 B TYR 251 A LYS 327 B LYS 260 A PHE 305 B PHE 238 A MET 314 B MET 247 BINDING SITE FOR RESIDUE PUT A 350 A PUT 350 Software 10 BINDING SITE FOR RESIDUE MGB A 375 A MGB 375 Software 10 A PHE 111 B PHE 44 10 1_555 A ASP 174 B ASP 107 10 1_555 A THR 176 B THR 109 10 1_555 A PHE 285 B PHE 218 10 1_555 A TYR 318 B TYR 251 10 1_555 A HOH 408 F HOH 10 1_555 A HOH 419 F HOH 10 1_555 A HOH 446 F HOH 10 1_555 B LEU 13 A LEU 13 10 1_555 B GLU 15 A GLU 15 10 1_555 A PYR 68 B PYR 1 10 1_555 A PHE 223 B PHE 156 10 1_555 A CYS 226 B CYS 159 10 1_555 A TYR 228 B TYR 161 10 1_555 A SER 229 B SER 162 10 1_555 A ILE 244 B ILE 177 10 1_555 A THR 245 B THR 178 10 1_555 A GLU 247 B GLU 180 10 1_555 B LEU 65 A LEU 65 10 1_555 B SER 66 A SER 66 10 1_555 5 C 1 2 1