1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Smith, J.W.
Le Calvez, H.
Parra-Gessert, L.
Preece, N.E.
Jia, X.
Assa-Munt, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
10298
10305
10.1074/jbc.M108071200
11748219
Selection and structure of ion-selective ligands for platelet integrin alpha IIb(beta) 3.
2002
10.2210/pdb1i8e/pdb
pdb_00001i8e
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1310.548
ION-SELECTIVE LIGAND A22
1
syn
polymer
no
yes
(ACE)CYCSLRGDCYC(NH2)
XCYCSLRGDCYCX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-07-10
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NMR Ensemble of Ion-Selective Ligand A1 for Platelet Integrin alphaIIb-beta3
NMR ENSEMBLE OF ION-SELECTIVE LIGAND D16 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
NMR ENSEMBLE OF ION-SELECTIVE LIGAND D18 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
RCSB
Y
RCSB
2001-03-13
REL
REL
The peptide was chemically synthesized:Commercial solid phase with cyclization with selective disulphide oxidation
sample
THE ENSEMBLE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES (CIRCA 2000).
structures with the lowest energy
200
15
NOESY
DQF-COSY
E-COSY
C13-HSQC
3MG/ML DMSO
1
atm
298.00
K
ENSEMBLE A22 IS BASED ON A TOTAL OF 170 NOE-DERIVED DISTANCE CONSTRAINTS,
10 DIHEDRAL ANGLE RESTRAINTS,
2 COVALENT -SS- BONDS N-ACETYL-CYS-1 TO CYS-11
AND CYS-3 TO CYS-9 RESPECTIVELY.
REFINEMENTS INCORPORATED ALPHA PROTON AND
ALPHA, BETA CARBON SHIFTS OF 11 RESIDUES.
RESTRAINED MOLECULAR DYNAMICS AND CHEMICAL SHIFT REFINEMENT.
3MG A22/ML
DMSO
A.BRUNGER M.NILGES (KUSZWESKI,J. CLORE,G.M.)
refinement
X-PLOR
3.8.5.1 (CHEM.SHIFT.MODULE)
Varianinc
collection
VNMR
6.1B
Hare,D.> Biosym > MSI
data analysis
Felix
2000
500
Varian
UNITYPLUS
ACE
1
n
1
ACE
1
A
CYS
2
n
2
CYS
2
A
TYR
3
n
3
TYR
3
A
CYS
4
n
4
CYS
4
A
SER
5
n
5
SER
5
A
LEU
6
n
6
LEU
6
A
ARG
7
n
7
ARG
7
A
GLY
8
n
8
GLY
8
A
ASP
9
n
9
ASP
9
A
CYS
10
n
10
CYS
10
A
TYR
11
n
11
TYR
11
A
CYS
12
n
12
CYS
12
A
CYS
12
n
13
NH2
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
7
0.240
SIDE CHAIN
2
A
ARG
7
0.315
SIDE CHAIN
3
A
ARG
7
0.245
SIDE CHAIN
4
A
ARG
7
0.322
SIDE CHAIN
5
A
ARG
7
0.315
SIDE CHAIN
6
A
ARG
7
0.264
SIDE CHAIN
7
A
ARG
7
0.317
SIDE CHAIN
8
A
ARG
7
0.148
SIDE CHAIN
9
A
ARG
7
0.319
SIDE CHAIN
10
A
ARG
7
0.316
SIDE CHAIN
11
A
ARG
7
0.257
SIDE CHAIN
12
A
ARG
7
0.316
SIDE CHAIN
13
A
ARG
7
0.311
SIDE CHAIN
14
A
ARG
7
0.292
SIDE CHAIN
15
A
ARG
7
0.317
SIDE CHAIN
1
A
CYS
4
-117.92
78.86
1
A
CYS
10
172.22
47.71
2
A
SER
5
-77.43
-168.84
2
A
CYS
10
176.25
-31.23
3
A
SER
5
-104.82
-162.09
3
A
CYS
10
169.35
38.17
3
A
TYR
11
-112.97
74.64
4
A
ARG
7
-154.01
-41.26
4
A
CYS
10
171.59
52.11
5
A
CYS
10
-173.78
29.93
5
A
TYR
11
-171.14
-167.31
6
A
SER
5
-127.64
-165.89
6
A
CYS
10
171.34
44.79
7
A
SER
5
-77.92
-166.81
7
A
CYS
10
-172.45
28.18
7
A
TYR
11
-170.51
-167.67
8
A
SER
5
-77.29
-169.19
8
A
CYS
10
-173.60
28.20
9
A
CYS
4
-104.11
76.72
9
A
LEU
6
-91.94
41.58
9
A
ARG
7
-152.62
14.43
9
A
CYS
10
-175.87
30.83
10
A
SER
5
-77.66
-169.84
10
A
CYS
10
-172.79
29.03
10
A
TYR
11
-170.90
-166.74
11
A
CYS
10
-174.59
26.13
11
A
TYR
11
-170.42
-165.01
12
A
ARG
7
-153.32
16.12
12
A
CYS
10
175.19
41.10
12
A
TYR
11
-171.03
-165.91
13
A
SER
5
-77.47
-169.62
13
A
CYS
10
179.93
35.79
13
A
TYR
11
-171.41
-170.90
14
A
CYS
10
175.81
38.17
14
A
TYR
11
-171.11
-173.61
15
A
SER
5
-77.63
-165.91
15
A
CYS
10
-172.87
27.79
NMR ENSEMBLE OF ION-SELECTIVE LIGAND A22 FOR PLATELET INTEGRIN ALPHAIIB-BETA3
1
N
N
disulf
2.019
A
CYS
2
A
SG
CYS
2
1_555
A
CYS
12
A
SG
CYS
12
1_555
disulf
2.026
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
10
A
SG
CYS
10
1_555
covale
1.308
both
A
ACE
1
A
C
ACE
1
1_555
A
CYS
2
A
N
CYS
2
1_555
covale
1.305
both
A
CYS
12
A
C
CYS
12
1_555
A
NH2
13
A
N
NH2
13
1_555
CELL ADHESION
INTEGRIN, RGD, CELL ADHESION
1I8E
PDB
1
1I8E
1
13
1I8E
1
13
1I8E
A
1
1
13
BINDING SITE FOR RESIDUE ACE A 1
A
ACE
1
Software
2
BINDING SITE FOR RESIDUE NH2 A 13
A
NH2
13
Software
1
A
TYR
11
A
TYR
11
2
1_555
A
CYS
12
A
CYS
12
2
1_555
A
CYS
12
A
CYS
12
1
1_555
1
P 1