0.008961 0.000000 0.000000 0.000000 0.022075 0.000000 0.000000 0.000000 0.009058 0.00000 0.00000 0.00000 Landry, R.C. Klimowicz, A.C. Lavictoire, S.J. Borisova, S. Kottachchi, D.T. Lorimer, I.A. Evans, S.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 111.600 45.300 110.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 308 883 893 10.1006/jmbi.2001.4628 11352579 Antibody recognition of a conformational epitope in a peptide antigen: Fv-peptide complex of an antibody fragment specific for the mutant EGF receptor, EGFRvIII. 2001 10.2210/pdb1i8i/pdb pdb_00001i8i 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 AREA DETECTOR 2000-04-21 MARRESEARCH Supper focussing mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 11745.038 EPIDERMAL GROWTH FACTOR RECEPTOR ANTIBODY MR1SCFV LIGHT CHAIN D100C 1 man polymer 13712.354 EPIDERMAL GROWTH FACTOR RECEPTOR ANTIBODY MR1SCFV HEAVY CHAIN R344C 1 man polymer 1421.531 EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII PEPTIDE ANTIGEN N-TERMINAL FRAGMENT 1 syn polymer 18.015 water 85 nat water DSFV MR1 VARIABLE DOMAIN LIGHT CHAIN DSFV MR1 VARIABLE DOMAIN HEAVY CHAIN EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII PEPTIDE ANTIGEN no no DIELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS EDVGDYYCLQSFNVPLTFGCGTKLEIK DIELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS EDVGDYYCLQSFNVPLTFGCGTKLEIK A polypeptide(L) no no QVKLQQSGGGLVKPGASLKLSCVTSGFTFRKFGMSWVRQTSDKCLEWVASISTGGYNTYYSDNVKGRFTISRENAKNTLY LQMSSLKSEDTALYYCTRGYSSTSYAMDYWGQGTTVTVSGIEGR QVKLQQSGGGLVKPGASLKLSCVTSGFTFRKFGMSWVRQTSDKCLEWVASISTGGYNTYYSDNVKGRFTISRENAKNTLY LQMSSLKSEDTALYYCTRGYSSTSYAMDYWGQGTTVTVSGIEGR B polypeptide(L) no no EEKKGNYVVTDH EEKKGNYVVTDH C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli TG1 M13KO7 HELPER PHAGE house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli TG1 M13KO7 HELPER PHAGE 1 2.60 52.61 VAPOR DIFFUSION, HANGING DROP 7.0 sodium chloride, MPD, PEG 10K, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references 1 0 2002-03-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details same protein, at liquid nitrogen temperature SEQUENCE Residues 100 of chain A and 344 of chain B have been mutated to Cys residues to introduce a disulfide bridge between chains A and B. There is no sequence database match for chain C because the sequence of EGFRvIII has not yet been deposited in any database. The DNA sequence of the normal EGF receptor has been deposited (NM_005228). RCSB Y RCSB 2001-03-14 REL REL HOH water The peptide sequence is from the N-terminus of the mutant epidermal growth factor receptor, EGFRvIII. sample WAT 601 4 HOH HOH 601 A WAT 602 4 HOH HOH 602 A WAT 604 4 HOH HOH 604 A WAT 607 4 HOH HOH 607 A WAT 613 4 HOH HOH 613 A WAT 618 4 HOH HOH 618 A WAT 625 4 HOH HOH 625 A WAT 631 4 HOH HOH 631 A WAT 633 4 HOH HOH 633 A WAT 634 4 HOH HOH 634 A WAT 635 4 HOH HOH 635 A WAT 637 4 HOH HOH 637 A WAT 641 4 HOH HOH 641 A WAT 649 4 HOH HOH 649 A WAT 651 4 HOH HOH 651 A WAT 653 4 HOH HOH 653 A WAT 654 4 HOH HOH 654 A WAT 655 4 HOH HOH 655 A WAT 656 4 HOH HOH 656 A WAT 657 4 HOH HOH 657 A WAT 658 4 HOH HOH 658 A WAT 659 4 HOH HOH 659 A WAT 660 4 HOH HOH 660 A WAT 664 4 HOH HOH 664 A WAT 666 4 HOH HOH 666 A WAT 668 4 HOH HOH 668 A WAT 673 4 HOH HOH 673 A WAT 674 4 HOH HOH 674 A WAT 684 4 HOH HOH 684 A WAT 600 4 HOH HOH 600 B WAT 603 4 HOH HOH 603 B WAT 605 4 HOH HOH 605 B WAT 606 4 HOH HOH 606 B WAT 608 4 HOH HOH 608 B WAT 609 4 HOH HOH 609 B WAT 610 4 HOH HOH 610 B WAT 612 4 HOH HOH 612 B WAT 614 4 HOH HOH 614 B WAT 615 4 HOH HOH 615 B WAT 616 4 HOH HOH 616 B WAT 617 4 HOH HOH 617 B WAT 619 4 HOH HOH 619 B WAT 620 4 HOH HOH 620 B WAT 621 4 HOH HOH 621 B WAT 622 4 HOH HOH 622 B WAT 623 4 HOH HOH 623 B WAT 624 4 HOH HOH 624 B WAT 626 4 HOH HOH 626 B WAT 627 4 HOH HOH 627 B WAT 628 4 HOH HOH 628 B WAT 629 4 HOH HOH 629 B WAT 630 4 HOH HOH 630 B WAT 632 4 HOH HOH 632 B WAT 636 4 HOH HOH 636 B WAT 638 4 HOH HOH 638 B WAT 640 4 HOH HOH 640 B WAT 642 4 HOH HOH 642 B WAT 643 4 HOH HOH 643 B WAT 644 4 HOH HOH 644 B WAT 645 4 HOH HOH 645 B WAT 646 4 HOH HOH 646 B WAT 647 4 HOH HOH 647 B WAT 648 4 HOH HOH 648 B WAT 650 4 HOH HOH 650 B WAT 652 4 HOH HOH 652 B WAT 661 4 HOH HOH 661 B WAT 663 4 HOH HOH 663 B WAT 665 4 HOH HOH 665 B WAT 667 4 HOH HOH 667 B WAT 669 4 HOH HOH 669 B WAT 670 4 HOH HOH 670 B WAT 671 4 HOH HOH 671 B WAT 672 4 HOH HOH 672 B WAT 675 4 HOH HOH 675 B WAT 676 4 HOH HOH 676 B WAT 677 4 HOH HOH 677 B WAT 678 4 HOH HOH 678 B WAT 679 4 HOH HOH 679 B WAT 680 4 HOH HOH 680 B WAT 681 4 HOH HOH 681 B WAT 682 4 HOH HOH 682 B WAT 683 4 HOH HOH 683 B WAT 611 4 HOH HOH 611 C WAT 639 4 HOH HOH 639 C WAT 662 4 HOH HOH 662 C ASP 1 n 1 ASP 1 A ILE 2 n 2 ILE 2 A GLU 3 n 3 GLU 3 A LEU 4 n 4 LEU 4 A THR 5 n 5 THR 5 A GLN 6 n 6 GLN 6 A SER 7 n 7 SER 7 A PRO 8 n 8 PRO 8 A ALA 9 n 9 ALA 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A SER 12 n 12 SER 12 A VAL 13 n 13 VAL 13 A ALA 14 n 14 ALA 14 A THR 15 n 15 THR 15 A GLY 16 n 16 GLY 16 A GLU 17 n 17 GLU 17 A LYS 18 n 18 LYS 18 A VAL 19 n 19 VAL 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A ARG 22 n 22 ARG 22 A CYS 23 n 23 CYS 23 A MET 24 n 24 MET 24 A THR 25 n 25 THR 25 A SER 26 n 26 SER 26 A THR 27 n 27 THR 27 A ASP 28 n 28 ASP 28 A ILE 29 n 29 ILE 29 A ASP 30 n 30 ASP 30 A ASP 31 n 31 ASP 31 A ASP 32 n 32 ASP 32 A MET 33 n 33 MET 33 A ASN 34 n 34 ASN 34 A TRP 35 n 35 TRP 35 A TYR 36 n 36 TYR 36 A GLN 37 n 37 GLN 37 A GLN 38 n 38 GLN 38 A LYS 39 n 39 LYS 39 A PRO 40 n 40 PRO 40 A GLY 41 n 41 GLY 41 A GLU 42 n 42 GLU 42 A PRO 43 n 43 PRO 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A PHE 46 n 46 PHE 46 A LEU 47 n 47 LEU 47 A ILE 48 n 48 ILE 48 A SER 49 n 49 SER 49 A GLU 50 n 50 GLU 50 A GLY 51 n 51 GLY 51 A ASN 52 n 52 ASN 52 A THR 53 n 53 THR 53 A LEU 54 n 54 LEU 54 A ARG 55 n 55 ARG 55 A PRO 56 n 56 PRO 56 A GLY 57 n 57 GLY 57 A VAL 58 n 58 VAL 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A SER 63 n 63 SER 63 A SER 64 n 64 SER 64 A SER 65 n 65 SER 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A GLY 68 n 68 GLY 68 A THR 69 n 69 THR 69 A ASP 70 n 70 ASP 70 A PHE 71 n 71 PHE 71 A VAL 72 n 72 VAL 72 A PHE 73 n 73 PHE 73 A THR 74 n 74 THR 74 A ILE 75 n 75 ILE 75 A GLU 76 n 76 GLU 76 A ASN 77 n 77 ASN 77 A THR 78 n 78 THR 78 A LEU 79 n 79 LEU 79 A SER 80 n 80 SER 80 A GLU 81 n 81 GLU 81 A ASP 82 n 82 ASP 82 A VAL 83 n 83 VAL 83 A GLY 84 n 84 GLY 84 A ASP 85 n 85 ASP 85 A TYR 86 n 86 TYR 86 A TYR 87 n 87 TYR 87 A CYS 88 n 88 CYS 88 A LEU 89 n 89 LEU 89 A GLN 90 n 90 GLN 90 A SER 91 n 91 SER 91 A PHE 92 n 92 PHE 92 A ASN 93 n 93 ASN 93 A VAL 94 n 94 VAL 94 A PRO 95 n 95 PRO 95 A LEU 96 n 96 LEU 96 A THR 97 n 97 THR 97 A PHE 98 n 98 PHE 98 A GLY 99 n 99 GLY 99 A CYS 100 n 100 CYS 100 A GLY 101 n 101 GLY 101 A THR 102 n 102 THR 102 A LYS 103 n 103 LYS 103 A LEU 104 n 104 LEU 104 A GLU 105 n 105 GLU 105 A ILE 106 n 106 ILE 106 A n 107 107 A GLN 301 n 1 GLN 301 B VAL 302 n 2 VAL 302 B LYS 303 n 3 LYS 303 B LEU 304 n 4 LEU 304 B GLN 305 n 5 GLN 305 B GLN 306 n 6 GLN 306 B SER 307 n 7 SER 307 B GLY 308 n 8 GLY 308 B GLY 309 n 9 GLY 309 B GLY 310 n 10 GLY 310 B LEU 311 n 11 LEU 311 B VAL 312 n 12 VAL 312 B LYS 313 n 13 LYS 313 B PRO 314 n 14 PRO 314 B GLY 315 n 15 GLY 315 B ALA 316 n 16 ALA 316 B SER 317 n 17 SER 317 B LEU 318 n 18 LEU 318 B LYS 319 n 19 LYS 319 B LEU 320 n 20 LEU 320 B SER 321 n 21 SER 321 B CYS 322 n 22 CYS 322 B VAL 323 n 23 VAL 323 B THR 324 n 24 THR 324 B SER 325 n 25 SER 325 B GLY 326 n 26 GLY 326 B PHE 327 n 27 PHE 327 B THR 328 n 28 THR 328 B PHE 329 n 29 PHE 329 B ARG 330 n 30 ARG 330 B LYS 331 n 31 LYS 331 B PHE 332 n 32 PHE 332 B GLY 333 n 33 GLY 333 B MET 334 n 34 MET 334 B SER 335 n 35 SER 335 B TRP 336 n 36 TRP 336 B VAL 337 n 37 VAL 337 B ARG 338 n 38 ARG 338 B GLN 339 n 39 GLN 339 B THR 340 n 40 THR 340 B SER 341 n 41 SER 341 B ASP 342 n 42 ASP 342 B LYS 343 n 43 LYS 343 B CYS 344 n 44 CYS 344 B LEU 345 n 45 LEU 345 B GLU 346 n 46 GLU 346 B TRP 347 n 47 TRP 347 B VAL 348 n 48 VAL 348 B ALA 349 n 49 ALA 349 B SER 350 n 50 SER 350 B ILE 351 n 51 ILE 351 B SER 354 n 52 SER 352 B THR 355 n 53 THR 353 B GLY 356 n 54 GLY 354 B GLY 357 n 55 GLY 355 B TYR 358 n 56 TYR 356 B ASN 359 n 57 ASN 357 B THR 360 n 58 THR 358 B TYR 361 n 59 TYR 359 B TYR 362 n 60 TYR 360 B SER 363 n 61 SER 361 B ASP 364 n 62 ASP 362 B ASN 365 n 63 ASN 363 B VAL 366 n 64 VAL 364 B LYS 367 n 65 LYS 365 B GLY 368 n 66 GLY 366 B ARG 369 n 67 ARG 367 B PHE 370 n 68 PHE 368 B THR 371 n 69 THR 369 B ILE 372 n 70 ILE 370 B SER 373 n 71 SER 371 B ARG 374 n 72 ARG 372 B GLU 375 n 73 GLU 373 B ASN 376 n 74 ASN 374 B ALA 377 n 75 ALA 375 B LYS 378 n 76 LYS 376 B ASN 379 n 77 ASN 377 B THR 380 n 78 THR 378 B LEU 381 n 79 LEU 379 B TYR 382 n 80 TYR 380 B LEU 383 n 81 LEU 381 B GLN 384 n 82 GLN 382 B MET 385 n 83 MET 383 B SER 386 n 84 SER 384 B SER 387 n 85 SER 385 B LEU 388 n 86 LEU 386 B LYS 389 n 87 LYS 387 B SER 390 n 88 SER 388 B GLU 391 n 89 GLU 389 B ASP 392 n 90 ASP 390 B THR 393 n 91 THR 391 B ALA 394 n 92 ALA 392 B LEU 395 n 93 LEU 393 B TYR 396 n 94 TYR 394 B TYR 397 n 95 TYR 395 B CYS 398 n 96 CYS 396 B THR 399 n 97 THR 397 B ARG 400 n 98 ARG 398 B GLY 401 n 99 GLY 399 B TYR 402 n 100 TYR 400 B SER 403 n 101 SER 401 B SER 404 n 102 SER 402 B THR 405 n 103 THR 403 B SER 406 n 104 SER 404 B TYR 407 n 105 TYR 405 B ALA 408 n 106 ALA 406 B MET 409 n 107 MET 407 B ASP 410 n 108 ASP 408 B TYR 411 n 109 TYR 409 B TRP 412 n 110 TRP 410 B GLY 413 n 111 GLY 411 B GLN 414 n 112 GLN 412 B GLY 415 n 113 GLY 413 B THR 416 n 114 THR 414 B THR 417 n 115 THR 415 B VAL 418 n 116 VAL 416 B THR 419 n 117 THR 417 B VAL 420 n 118 VAL 418 B SER 421 n 119 SER 419 B n 120 420 B n 121 421 B n 122 422 B n 123 423 B n 124 424 B n 1 499 C n 2 500 C n 3 501 C LYS 502 n 4 LYS 502 C GLY 503 n 5 GLY 503 C ASN 504 n 6 ASN 504 C TYR 505 n 7 TYR 505 C VAL 506 n 8 VAL 506 C VAL 507 n 9 VAL 507 C THR 508 n 10 THR 508 C ASP 509 n 11 ASP 509 C HIS 510 n 12 HIS 510 C author_and_software_defined_assembly PISA 3 trimeric 2850 -17 10130 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 7 A O SER 7 A N ARG 22 A N ARG 22 A O CYS 23 A O CYS 23 A N PHE 71 A N PHE 71 A N THR 74 A N THR 74 A O SER 63 A O SER 63 A O THR 53 A O THR 53 A N SER 49 A N SER 49 A N LEU 47 A N LEU 47 A O TRP 35 A O TRP 35 A N GLN 38 A N GLN 38 A O ASP 85 A O ASP 85 A N GLN 90 A N GLN 90 A O THR 97 A O THR 97 A O THR 53 A O THR 53 A N SER 49 A N SER 49 A N LEU 47 A N LEU 47 A O TRP 35 A O TRP 35 A N GLN 38 A N GLN 38 A O ASP 85 A O ASP 85 A N TYR 86 A N TYR 86 A O THR 102 A O THR 102 A O LYS 103 A O LYS 103 A N LEU 11 A N LEU 11 B O SER 307 B O SER 7 B N SER 321 B N SER 21 B O CYS 322 B O CYS 22 B N LEU 379 B N LEU 79 B N GLN 382 B N GLN 82 B O THR 369 B O THR 69 B O TYR 409 B O TYR 109 B N ARG 398 B N ARG 98 B N THR 397 B N THR 97 B O SER 335 B O SER 35 B O ARG 338 B O ARG 38 B N GLU 346 B N GLU 46 B O SER 350 B O SER 50 B N TYR 359 B N TYR 59 B O TYR 409 B O TYR 109 B N ARG 398 B N ARG 98 B N TYR 394 B N TYR 94 B O THR 414 B O THR 114 B N THR 417 B N THR 117 B O GLY 310 B O GLY 10 1 A LYS 107 A LYS 107 1 Y 1 B GLY 420 B GLY 120 1 Y 1 B ILE 421 B ILE 121 1 Y 1 B GLU 422 B GLU 122 1 Y 1 B GLY 423 B GLY 123 1 Y 1 B ARG 424 B ARG 124 1 Y 1 C GLU 499 C GLU 1 1 Y 1 C GLU 500 C GLU 2 1 Y 1 C LYS 501 C LYS 3 1 Y 1 C TYR 505 0.084 SIDE CHAIN 1 -16.34 2.70 111.00 94.66 A A A N CA C ASP ASP ASP 1 1 1 N 1 6.82 0.80 106.30 113.12 A A A CD1 CG CD2 TRP TRP TRP 35 35 35 N 1 -5.97 0.80 107.30 101.33 A A A CE2 CD2 CG TRP TRP TRP 35 35 35 N 1 -4.04 0.60 121.00 116.96 A A A CB CG CD1 TYR TYR TYR 36 36 36 N 1 -3.92 0.60 121.00 117.08 A A A CB CG CD1 TYR TYR TYR 86 86 86 N 1 13.72 2.20 113.40 127.12 A A A CA CB CG LYS LYS LYS 103 103 103 N 1 14.57 2.30 115.30 129.87 A A A CA CB CG LEU LEU LEU 104 104 104 N 1 5.33 0.80 106.30 111.63 B B B CD1 CG CD2 TRP TRP TRP 336 336 336 N 1 -5.38 0.80 107.30 101.92 B B B CE2 CD2 CG TRP TRP TRP 336 336 336 N 1 -4.95 0.50 120.30 115.35 B B B NE CZ NH2 ARG ARG ARG 338 338 338 N 1 7.02 1.10 114.20 121.22 B B B CA CB SG CYS CYS CYS 344 344 344 N 1 6.87 0.80 106.30 113.17 B B B CD1 CG CD2 TRP TRP TRP 347 347 347 N 1 -6.47 1.00 110.10 103.63 B B B CG CD1 NE1 TRP TRP TRP 347 347 347 N 1 -4.93 0.80 107.30 102.37 B B B CE2 CD2 CG TRP TRP TRP 347 347 347 N 1 5.56 0.50 120.30 125.86 B B B NE CZ NH1 ARG ARG ARG 372 372 372 N 1 -5.80 0.50 120.30 114.50 B B B NE CZ NH2 ARG ARG ARG 372 372 372 N 1 -11.70 1.90 110.30 98.60 B B B N CA CB THR THR THR 397 397 397 N 1 5.07 0.50 120.30 125.37 B B B NE CZ NH1 ARG ARG ARG 398 398 398 N 1 -3.17 0.50 120.30 117.13 B B B NE CZ NH2 ARG ARG ARG 398 398 398 N 1 18.71 2.70 111.00 129.71 B B B N CA C SER SER SER 402 402 402 N 1 -12.16 1.90 110.30 98.14 B B B N CA CB THR THR THR 403 403 403 N 1 6.41 0.80 106.30 112.71 B B B CD1 CG CD2 TRP TRP TRP 410 410 410 N 1 -5.57 0.80 107.30 101.73 B B B CE2 CD2 CG TRP TRP TRP 410 410 410 N 1 9.79 1.60 110.90 120.69 B B B CG1 CB CG2 VAL VAL VAL 416 416 416 N 1 A GLU 50 -36.75 129.86 1 A GLU 105 45.09 79.31 1 B ALA 316 -68.49 -179.67 1 B ASP 342 -95.56 33.79 1 B LYS 343 48.44 3.69 1 B SER 401 -173.50 129.91 1 B SER 402 21.23 -31.32 1 C ASN 504 26.57 84.00 26 0.262 0.156 0.176 0.173 2.4 6.0 997 9686 9119 RANDOM 1 3 3 MOLECULAR REPLACEMENT CHARMm 2.4 6.0 85 1896 0 0 1811 3.2 0.017 0.344 0.245 2.50 83 678 8170 65.3 40.12 2.4 6.0 1I8I 9686 9119 3 3 0.06 1 16.2 2.6 91.9 0.115 2.4 2.48 2.46 62.3 data reduction DENZO data scaling SCALEPACK phasing MERLOT refinement X-PLOR CRYSTAL STRUCTURE OF DSFV MR1 IN COMPLEX WITH THE PEPTIDE ANTIGEN OF THE MUTANT EPIDERMAL GROWTH FACTOR RECEPTOR, EGFRVIII, AT ROOM TEMPERATURE 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A LEU 79 A LEU 79 HELX_P A VAL 83 A VAL 83 5 1 5 B THR 328 B THR 28 HELX_P B PHE 332 B PHE 32 5 2 5 B LYS 387 B LYS 87 HELX_P B THR 391 B THR 91 5 3 5 disulf 2.001 A CYS 23 A SG CYS 23 1_555 A CYS 88 A SG CYS 88 1_555 disulf 1.985 A CYS 100 A SG CYS 100 1_555 B CYS 344 B SG CYS 44 1_555 disulf 1.988 B CYS 322 B SG CYS 22 1_555 B CYS 396 B SG CYS 96 1_555 IMMUNE SYSTEM antibody-peptide complex, immunoglobulin fold, peptide antigen, type II' beta turn, IMMUNE SYSTEM A SER 7 A SER 7 1 A PRO 8 A PRO 8 -1.76 A VAL 94 A VAL 94 1 A PRO 95 A PRO 95 -3.90 Q8R028 UNP 1 136 Q8R028 DIELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLS EDVGDYYCLQSFNVPLTFGDGTKLEIK HV58_MOUSE UNP 2 1 P18529 QVKLQQSGGGLVKPGASLKLSCVTSGFTFRKFGMSWVRQTSDKRLEWVASISTGGYNTYYSDNVKGRFTISRENAKNTLY LQMSSLKSEDTALYYCTRGYSSTSYAMDYWGQGTTVTVSGIEGR 1I8I PDB 3 1I8I 136 242 1I8I 1 107 Q8R028 A 1 1 107 1 124 1I8I 301 424 P18529 B 2 1 124 499 510 1I8I 499 510 1I8I C 3 1 12 1 ASP engineered mutation CYS 100 1I8I A Q8R028 UNP 235 100 2 ARG engineered mutation CYS 344 1I8I B P18529 UNP 44 44 2 SER conflict GLY 420 1I8I B P18529 UNP 120 120 2 SER conflict ILE 421 1I8I B P18529 UNP 121 121 2 GLY conflict GLU 422 1I8I B P18529 UNP 122 122 2 GLY conflict ARG 424 1I8I B P18529 UNP 124 124 4 5 6 4 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A LEU 4 A LEU 4 A SER 7 A SER 7 A VAL 19 A VAL 19 A THR 25 A THR 25 A ASP 70 A ASP 70 A ILE 75 A ILE 75 A PHE 62 A PHE 62 A THR 67 A THR 67 A THR 53 A THR 53 A LEU 54 A LEU 54 A LYS 45 A LYS 45 A SER 49 A SER 49 A MET 33 A MET 33 A GLN 38 A GLN 38 A GLY 84 A GLY 84 A GLN 90 A GLN 90 A THR 97 A THR 97 A PHE 98 A PHE 98 A THR 53 A THR 53 A LEU 54 A LEU 54 A LYS 45 A LYS 45 A SER 49 A SER 49 A MET 33 A MET 33 A GLN 38 A GLN 38 A GLY 84 A GLY 84 A GLN 90 A GLN 90 A THR 102 A THR 102 A LEU 104 A LEU 104 A SER 10 A SER 10 A LEU 11 A LEU 11 B LYS 303 B LYS 3 B SER 307 B SER 7 B LEU 318 B LEU 18 B SER 325 B SER 25 B THR 378 B THR 78 B MET 383 B MET 83 B PHE 368 B PHE 68 B GLU 373 B GLU 73 B SER 404 B SER 104 B TRP 410 B TRP 110 B ALA 392 B ALA 92 B SER 401 B SER 101 B MET 334 B MET 34 B GLN 339 B GLN 39 B LEU 345 B LEU 45 B ILE 351 B ILE 51 B THR 358 B THR 58 B TYR 360 B TYR 60 B SER 404 B SER 104 B TRP 410 B TRP 110 B ALA 392 B ALA 92 B SER 401 B SER 101 B THR 414 B THR 114 B VAL 418 B VAL 118 B GLY 310 B GLY 10 B VAL 312 B VAL 12 20 C 2 2 21