1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhang, Q.
Harada, K.
Cho, H.S.
Frankel, A.
Wemmer, D.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
Chem.Biol.
CBOLE2
2050
1074-5521
8
511
520
10.1016/S1074-5521(01)00027-8
11358697
Structural characterization of the complex of the Rev response element RNA with a selected peptide.
2001
10.2210/pdb1i9f/pdb
pdb_00001i9f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
34-MER RNA
11039.639
REV RESPONSE ELEMENT RNA
1
syn
polymer
19-MER PEPTIDE
2145.442
RSG-1.2 PEPTIDE
1
syn
polymer
RRE, HIV-1 RRE RNA
no
no
GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC
GGUCUGGGCGCAGCGCAAGCUGACGGUACAGGCC
A
polyribonucleotide
no
no
RRGSRPSGAERRRRRAAAA
RRGSRPSGAERRRRRAAAA
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-30.907
1
19
A
1
A
34
1.403
A_G1:C34_A
1
-7.164
-0.518
-1.031
-0.092
-33.047
1
A
2
A
33
0.917
A_G2:C33_A
2
4.821
1.730
-1.220
0.425
-5.608
28
A
3
A
32
-16.630
A_U3:G32_A
3
5.606
2.090
-0.285
-0.364
17.893
1
19
A
4
A
31
0.142
A_C4:G31_A
4
-8.400
-0.099
-0.432
0.001
22.899
1
20
A
5
A
30
-4.373
A_U5:A30_A
5
-8.956
0.173
-0.173
-0.051
12.286
1
19
A
6
A
29
-0.777
A_G6:C29_A
6
7.951
-0.311
-0.693
-0.218
-4.489
8
A
7
A
28
-29.284
A_G7:A28_A
7
-32.498
0.027
0.032
1.595
-5.598
3
A
8
A
26
-178.279
A_G8:G26_A
8
-6.532
1.169
-0.585
1.001
8.758
1
19
A
9
A
25
2.297
A_C9:G25_A
9
-6.294
0.395
-0.251
-0.050
0.903
1
19
A
10
A
24
2.024
A_G10:C24_A
10
-2.030
-0.426
-0.511
-0.171
-10.921
1
19
A
11
A
22
0.717
A_C11:G22_A
11
-12.324
0.180
-0.192
-0.181
-10.544
1
20
A
12
A
21
-6.713
A_A12:U21_A
12
10.751
0.033
-0.807
-0.081
32.348
1
19
A
13
A
20
-8.946
A_G13:C20_A
13
20.047
0.706
0.222
0.007
10.594
1
A
14
A
19
15.689
A_C14:G19_A
14
22.801
0.779
0.057
0.296
26.997
9
11
A
15
A
18
6.538
A_G15:A18_A
15
23.995
6.162
0.989
-4.677
2.823
36.535
A
A
1
2
18.618
A
A
34
33
3.453
11.413
0.461
-1.610
AA_G1G2:C33C34_AA
1
7.209
-11.760
34.029
-4.138
0.256
2.992
27.667
A
A
2
3
4.425
A
A
33
32
2.939
2.107
-1.135
-0.928
AA_G2U3:G32C33_AA
2
-3.978
8.355
27.305
-2.407
1.493
1.606
18.725
A
A
3
4
33.850
A
A
32
31
2.888
10.398
0.594
-1.438
AA_U3C4:G31G32_AA
3
-0.271
0.881
15.592
-8.576
-1.934
3.397
28.861
A
A
4
5
6.053
A
A
31
30
3.582
3.004
-0.375
-1.817
AA_C4U5:A30G31_AA
4
-3.720
7.497
28.471
-4.363
-0.137
3.209
26.947
A
A
5
6
15.072
A
A
30
29
3.923
6.900
0.240
-1.823
AA_U5G6:C29A30_AA
5
-5.434
11.871
25.501
-5.892
-2.075
4.273
47.867
A
A
6
7
-32.632
A
A
29
28
4.591
-25.246
-1.777
-0.899
AA_G6G7:A28C29_AA
6
3.664
-4.735
40.845
1.856
2.620
3.265
90.452
A
A
7
8
2.900
A
A
28
26
3.251
4.116
-1.252
1.633
AA_G7G8:G26A28_AA
7
3.724
-2.624
90.318
1.068
0.956
3.276
-62.972
A
A
8
9
1.855
A
A
26
25
3.534
-1.931
-1.292
-0.872
AA_G8C9:G25G26_AA
8
-10.465
-10.057
-62.158
0.926
-1.727
4.357
23.956
A
A
9
10
-6.083
A
A
25
24
4.153
-2.504
0.797
-1.460
AA_C9G10:C24G25_AA
9
4.720
-11.466
23.360
-2.448
0.096
3.359
44.503
A
A
10
11
29.169
A
A
24
22
4.259
21.208
0.115
-0.881
AA_G10C11:G22C24_AA
10
5.850
-8.046
38.926
-3.614
0.524
3.703
32.395
A
A
11
12
5.496
A
A
22
21
3.859
3.057
-0.152
-1.149
AA_C11A12:U21G22_AA
11
3.274
-5.886
32.092
-2.685
0.943
2.581
31.771
A
A
12
13
-14.666
A
A
21
20
2.476
-7.868
0.078
-1.121
AA_A12G13:C20U21_AA
12
-7.797
14.534
29.824
-0.895
-1.284
1.170
58.471
A
A
13
14
59.217
A
A
20
19
4.647
49.539
0.070
-1.741
AA_G13C14:G19C20_AA
13
4.766
-5.697
31.724
-4.932
0.232
4.114
57.967
A
A
14
15
-46.199
A
A
19
18
5.388
-39.377
-1.046
-0.430
AA_C14G15:A18G19_AA
14
-24.746
29.033
35.610
3.505
-1.402
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-05-25
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2001-03-19
REL
sequence naturally occurs in HUMAN IMMUNODEFICIENCY VIRUS TYPE 1, strain DH5a
sample
20
7
2D NOESY
3D_13C-separated_NOESY
3D_15N-separated_NOESY
DQF-COSY
HNCA-J
20mM sodium phosphate, 100 mM sodium chloride
6.5
1
atm
298
K
fewest violations, lowest energy
1.6 mM RNA/peptide
90% H2O/10% D2O, 20 mM sodium phosphate, 100 mM sodium chloride, 0.1 mM EDTA, pH 6.5
data analysis
XEASY
data analysis
Felix
500
600
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
C
4
n
4
C
4
A
U
5
n
5
U
5
A
G
6
n
6
G
6
A
G
7
n
7
G
7
A
G
8
n
8
G
8
A
C
9
n
9
C
9
A
G
10
n
10
G
10
A
C
11
n
11
C
11
A
A
12
n
12
A
12
A
G
13
n
13
G
13
A
C
14
n
14
C
14
A
G
15
n
15
G
15
A
C
16
n
16
C
16
A
A
17
n
17
A
17
A
A
18
n
18
A
18
A
G
19
n
19
G
19
A
C
20
n
20
C
20
A
U
21
n
21
U
21
A
G
22
n
22
G
22
A
A
23
n
23
A
23
A
C
24
n
24
C
24
A
G
25
n
25
G
25
A
G
26
n
26
G
26
A
U
27
n
27
U
27
A
A
28
n
28
A
28
A
C
29
n
29
C
29
A
A
30
n
30
A
30
A
G
31
n
31
G
31
A
G
32
n
32
G
32
A
C
33
n
33
C
33
A
C
34
n
34
C
34
A
ARG
201
n
1
ARG
201
B
ARG
202
n
2
ARG
202
B
GLY
203
n
3
GLY
203
B
SER
204
n
4
SER
204
B
ARG
205
n
5
ARG
205
B
PRO
206
n
6
PRO
206
B
SER
207
n
7
SER
207
B
GLY
208
n
8
GLY
208
B
ALA
209
n
9
ALA
209
B
GLU
210
n
10
GLU
210
B
ARG
211
n
11
ARG
211
B
ARG
212
n
12
ARG
212
B
ARG
213
n
13
ARG
213
B
ARG
214
n
14
ARG
214
B
ARG
215
n
15
ARG
215
B
ALA
216
n
16
ALA
216
B
ALA
217
n
17
ALA
217
B
ALA
218
n
18
ALA
218
B
ALA
219
n
19
ALA
219
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
HO2'
OP2
G
C
8
9
1.58
3
A
A
OP2
HO2'
G
G
25
26
1.57
5
A
A
OP2
HO2'
G
G
25
26
1.60
5
B
B
PRO
SER
206
207
-121.88
1
A
G
1
0.066
SIDE CHAIN
1
A
G
2
0.064
SIDE CHAIN
1
A
U
5
0.107
SIDE CHAIN
1
A
G
6
0.107
SIDE CHAIN
1
A
G
10
0.100
SIDE CHAIN
1
A
A
12
0.056
SIDE CHAIN
1
A
C
14
0.078
SIDE CHAIN
1
A
G
15
0.090
SIDE CHAIN
1
A
C
16
0.072
SIDE CHAIN
1
A
G
19
0.227
SIDE CHAIN
1
A
C
24
0.133
SIDE CHAIN
1
A
C
33
0.088
SIDE CHAIN
1
B
ARG
201
0.097
SIDE CHAIN
1
B
ARG
212
0.093
SIDE CHAIN
2
A
G
2
0.053
SIDE CHAIN
2
A
G
6
0.083
SIDE CHAIN
2
A
G
7
0.066
SIDE CHAIN
2
A
G
8
0.075
SIDE CHAIN
2
A
G
10
0.054
SIDE CHAIN
2
A
C
14
0.071
SIDE CHAIN
2
A
G
15
0.094
SIDE CHAIN
2
A
C
16
0.076
SIDE CHAIN
2
A
G
19
0.172
SIDE CHAIN
2
A
G
22
0.075
SIDE CHAIN
2
A
A
23
0.073
SIDE CHAIN
2
A
G
26
0.101
SIDE CHAIN
2
A
A
30
0.072
SIDE CHAIN
2
A
C
33
0.101
SIDE CHAIN
2
B
ARG
212
0.090
SIDE CHAIN
3
A
G
1
0.088
SIDE CHAIN
3
A
G
2
0.055
SIDE CHAIN
3
A
U
3
0.122
SIDE CHAIN
3
A
U
5
0.085
SIDE CHAIN
3
A
G
8
0.071
SIDE CHAIN
3
A
C
9
0.061
SIDE CHAIN
3
A
C
11
0.077
SIDE CHAIN
3
A
A
12
0.144
SIDE CHAIN
3
A
G
13
0.079
SIDE CHAIN
3
A
C
14
0.061
SIDE CHAIN
3
A
G
15
0.104
SIDE CHAIN
3
A
C
16
0.083
SIDE CHAIN
3
A
G
19
0.120
SIDE CHAIN
3
A
C
20
0.074
SIDE CHAIN
3
A
G
22
0.074
SIDE CHAIN
3
A
C
24
0.114
SIDE CHAIN
3
A
G
25
0.129
SIDE CHAIN
3
A
A
30
0.052
SIDE CHAIN
3
A
G
32
0.075
SIDE CHAIN
4
A
G
1
0.081
SIDE CHAIN
4
A
G
2
0.088
SIDE CHAIN
4
A
U
3
0.096
SIDE CHAIN
4
A
C
4
0.074
SIDE CHAIN
4
A
G
6
0.079
SIDE CHAIN
4
A
G
7
0.087
SIDE CHAIN
4
A
C
9
0.074
SIDE CHAIN
4
A
G
15
0.082
SIDE CHAIN
4
A
C
16
0.105
SIDE CHAIN
4
A
G
19
0.086
SIDE CHAIN
4
A
C
20
0.090
SIDE CHAIN
4
A
G
22
0.068
SIDE CHAIN
4
A
G
25
0.060
SIDE CHAIN
4
A
G
26
0.062
SIDE CHAIN
4
A
G
31
0.051
SIDE CHAIN
5
A
C
4
0.089
SIDE CHAIN
5
A
U
5
0.119
SIDE CHAIN
5
A
G
6
0.109
SIDE CHAIN
5
A
G
8
0.100
SIDE CHAIN
5
A
G
10
0.071
SIDE CHAIN
5
A
C
11
0.111
SIDE CHAIN
5
A
C
14
0.078
SIDE CHAIN
5
A
G
15
0.099
SIDE CHAIN
5
A
C
16
0.093
SIDE CHAIN
5
A
G
19
0.143
SIDE CHAIN
5
A
G
25
0.148
SIDE CHAIN
5
A
G
26
0.068
SIDE CHAIN
5
A
U
27
0.087
SIDE CHAIN
5
B
ARG
202
0.080
SIDE CHAIN
6
A
G
1
0.116
SIDE CHAIN
6
A
G
6
0.090
SIDE CHAIN
6
A
G
7
0.071
SIDE CHAIN
6
A
G
8
0.084
SIDE CHAIN
6
A
C
9
0.098
SIDE CHAIN
6
A
C
11
0.059
SIDE CHAIN
6
A
C
16
0.126
SIDE CHAIN
6
A
A
17
0.057
SIDE CHAIN
6
A
G
19
0.105
SIDE CHAIN
6
A
G
22
0.094
SIDE CHAIN
6
A
A
23
0.081
SIDE CHAIN
6
A
C
24
0.169
SIDE CHAIN
6
A
G
26
0.101
SIDE CHAIN
6
A
U
27
0.141
SIDE CHAIN
6
A
C
34
0.106
SIDE CHAIN
6
B
ARG
213
0.079
SIDE CHAIN
7
A
G
2
0.124
SIDE CHAIN
7
A
U
3
0.122
SIDE CHAIN
7
A
G
6
0.127
SIDE CHAIN
7
A
G
7
0.079
SIDE CHAIN
7
A
G
10
0.105
SIDE CHAIN
7
A
C
11
0.078
SIDE CHAIN
7
A
G
19
0.065
SIDE CHAIN
7
A
C
20
0.061
SIDE CHAIN
7
A
U
21
0.077
SIDE CHAIN
7
A
A
23
0.065
SIDE CHAIN
7
A
G
25
0.096
SIDE CHAIN
7
A
G
26
0.140
SIDE CHAIN
7
A
C
29
0.082
SIDE CHAIN
7
A
A
30
0.065
SIDE CHAIN
7
A
G
32
0.156
SIDE CHAIN
7
A
C
33
0.076
SIDE CHAIN
7
B
ARG
211
0.092
SIDE CHAIN
1
5.99
0.70
108.50
114.49
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
1
6.16
0.90
109.80
115.96
A
A
A
C5'
C4'
O4'
G
G
G
2
2
2
N
1
4.20
0.70
108.50
112.70
A
A
A
O4'
C1'
N9
G
G
G
2
2
2
N
1
4.47
0.70
108.50
112.97
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
1
-4.21
0.70
119.90
115.69
A
A
A
N3
C2
N2
G
G
G
7
7
7
N
1
6.11
0.70
108.50
114.61
A
A
A
O4'
C1'
N1
C
C
C
9
9
9
N
1
5.21
0.70
108.50
113.71
A
A
A
O4'
C1'
N9
G
G
G
13
13
13
N
1
4.25
0.70
108.50
112.75
A
A
A
O4'
C1'
N9
G
G
G
15
15
15
N
1
4.55
0.70
108.50
113.05
A
A
A
O4'
C1'
N1
C
C
C
16
16
16
N
1
5.40
0.70
108.50
113.90
A
A
A
O4'
C1'
N9
G
G
G
19
19
19
N
1
4.70
0.60
118.90
123.60
A
A
A
N1
C2
O2
C
C
C
20
20
20
N
1
-4.78
0.70
121.90
117.12
A
A
A
N3
C2
O2
C
C
C
20
20
20
N
1
4.24
0.70
108.50
112.74
A
A
A
O4'
C1'
N1
C
C
C
24
24
24
N
1
5.76
0.70
108.50
114.26
A
A
A
O4'
C1'
N9
G
G
G
25
25
25
N
1
4.21
0.70
108.50
112.71
A
A
A
O4'
C1'
N1
C
C
C
33
33
33
N
1
4.68
0.70
108.50
113.18
A
A
A
O4'
C1'
N1
C
C
C
34
34
34
N
1
-3.22
0.50
120.30
117.08
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
202
202
202
N
2
5.31
0.70
108.50
113.81
A
A
A
O4'
C1'
N1
C
C
C
9
9
9
N
2
6.03
0.70
108.50
114.53
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
2
5.08
0.70
108.50
113.58
A
A
A
O4'
C1'
N9
G
G
G
15
15
15
N
2
4.57
0.70
108.50
113.07
A
A
A
O4'
C1'
N1
C
C
C
16
16
16
N
2
6.39
0.70
108.50
114.89
A
A
A
O4'
C1'
N9
G
G
G
19
19
19
N
2
4.38
0.70
108.50
112.88
A
A
A
O4'
C1'
N1
C
C
C
20
20
20
N
2
3.66
0.60
118.90
122.56
A
A
A
N1
C2
O2
C
C
C
20
20
20
N
2
5.22
0.70
108.50
113.72
A
A
A
O4'
C1'
N9
A
A
A
23
23
23
N
2
4.30
0.70
108.50
112.80
A
A
A
O4'
C1'
N9
G
G
G
31
31
31
N
2
4.54
0.70
108.50
113.04
A
A
A
O4'
C1'
N1
C
C
C
33
33
33
N
3
5.18
0.70
108.50
113.68
A
A
A
O4'
C1'
N9
G
G
G
2
2
2
N
3
5.39
0.70
108.50
113.89
A
A
A
O4'
C1'
N1
U
U
U
3
3
3
N
3
6.19
0.70
108.50
114.69
A
A
A
O4'
C1'
N1
C
C
C
4
4
4
N
3
5.83
0.70
108.50
114.33
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
3
6.13
0.70
108.50
114.63
A
A
A
O4'
C1'
N9
G
G
G
8
8
8
N
3
8.30
0.70
108.50
116.80
A
A
A
O4'
C1'
N1
C
C
C
9
9
9
N
3
4.76
0.70
108.50
113.26
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
3
6.32
0.70
108.50
114.82
A
A
A
O4'
C1'
N1
C
C
C
11
11
11
N
3
4.16
0.60
118.90
123.06
A
A
A
N1
C2
O2
C
C
C
11
11
11
N
3
5.06
0.70
108.50
113.56
A
A
A
O4'
C1'
N9
A
A
A
12
12
12
N
3
5.53
0.70
108.50
114.03
A
A
A
O4'
C1'
N9
G
G
G
13
13
13
N
3
5.49
0.70
108.50
113.99
A
A
A
O4'
C1'
N9
G
G
G
15
15
15
N
3
-4.22
0.70
119.90
115.68
A
A
A
N3
C2
N2
G
G
G
15
15
15
N
3
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N1
C
C
C
16
16
16
N
3
4.73
0.70
108.50
113.23
A
A
A
O4'
C1'
N9
G
G
G
19
19
19
N
3
5.10
0.70
108.50
113.60
A
A
A
O4'
C1'
N9
G
G
G
22
22
22
N
3
-4.48
0.70
109.70
105.22
A
A
A
C1'
O4'
C4'
A
A
A
23
23
23
N
3
5.56
0.70
108.50
114.06
A
A
A
O4'
C1'
N9
A
A
A
23
23
23
N
3
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N1
C
C
C
24
24
24
N
3
5.05
0.70
108.50
113.55
A
A
A
O4'
C1'
N9
G
G
G
31
31
31
N
3
4.79
0.70
108.50
113.29
A
A
A
O4'
C1'
N9
G
G
G
32
32
32
N
4
4.87
0.70
108.50
113.37
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
4
5.83
0.70
108.50
114.33
A
A
A
O4'
C1'
N9
G
G
G
2
2
2
N
4
4.81
0.70
108.50
113.31
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
4
-4.68
0.70
109.70
105.02
A
A
A
C1'
O4'
C4'
C
C
C
9
9
9
N
4
6.68
0.70
108.50
115.18
A
A
A
O4'
C1'
N1
C
C
C
9
9
9
N
4
4.96
0.70
108.50
113.46
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
4
5.18
0.70
108.50
113.68
A
A
A
O4'
C1'
N1
C
C
C
11
11
11
N
4
4.41
0.70
108.50
112.91
A
A
A
O4'
C1'
N9
A
A
A
12
12
12
N
4
6.13
0.70
108.50
114.63
A
A
A
O4'
C1'
N9
G
G
G
13
13
13
N
4
5.85
0.70
108.50
114.35
A
A
A
O4'
C1'
N9
G
G
G
15
15
15
N
4
5.40
0.70
108.50
113.90
A
A
A
O4'
C1'
N1
C
C
C
16
16
16
N
4
4.57
0.70
108.50
113.07
A
A
A
O4'
C1'
N9
A
A
A
18
18
18
N
4
-10.10
1.40
115.20
105.10
A
A
A
C5'
C4'
C3'
C
C
C
20
20
20
N
4
3.70
0.60
118.90
122.60
A
A
A
N1
C2
O2
C
C
C
20
20
20
N
4
5.24
0.70
108.50
113.74
A
A
A
O4'
C1'
N1
U
U
U
21
21
21
N
4
4.43
0.70
108.50
112.93
A
A
A
O4'
C1'
N1
C
C
C
29
29
29
N
4
4.40
0.70
108.50
112.90
A
A
A
O4'
C1'
N9
G
G
G
31
31
31
N
4
5.22
0.70
108.50
113.72
A
A
A
O4'
C1'
N1
C
C
C
33
33
33
N
5
4.22
0.70
108.50
112.72
A
A
A
O4'
C1'
N9
G
G
G
1
1
1
N
5
4.23
0.70
108.50
112.73
A
A
A
O4'
C1'
N9
G
G
G
2
2
2
N
5
5.81
0.70
108.50
114.31
A
A
A
O4'
C1'
N1
U
U
U
3
3
3
N
5
5.49
0.70
108.50
113.99
A
A
A
O4'
C1'
N1
C
C
C
4
4
4
N
5
5.10
0.70
108.50
113.60
A
A
A
O4'
C1'
N1
U
U
U
5
5
5
N
5
5.36
0.70
108.50
113.86
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
5
6.55
0.70
108.50
115.05
A
A
A
O4'
C1'
N9
G
G
G
8
8
8
N
5
5.49
0.90
109.80
115.29
A
A
A
C5'
C4'
O4'
C
C
C
9
9
9
N
5
-6.61
1.00
102.60
95.99
A
A
A
C4'
C3'
C2'
C
C
C
9
9
9
N
5
6.22
0.70
108.50
114.72
A
A
A
O4'
C1'
N1
C
C
C
9
9
9
N
5
4.40
0.60
118.90
123.30
A
A
A
N1
C2
O2
C
C
C
9
9
9
N
5
-4.95
0.70
121.90
116.95
A
A
A
N3
C2
O2
C
C
C
9
9
9
N
5
5.75
0.70
108.50
114.25
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
5
-2.72
0.40
106.40
103.68
A
A
A
C8
N9
C4
G
G
G
10
10
10
N
5
5.55
0.80
101.50
107.05
A
A
A
C3'
C2'
C1'
C
C
C
11
11
11
N
5
5.78
0.70
108.50
114.28
A
A
A
O4'
C1'
N9
G
G
G
13
13
13
N
5
4.83
0.70
108.50
113.33
A
A
A
O4'
C1'
N1
C
C
C
16
16
16
N
5
4.72
0.70
108.50
113.22
A
A
A
O4'
C1'
N1
C
C
C
20
20
20
N
5
3.61
0.60
118.90
122.51
A
A
A
N1
C2
O2
C
C
C
20
20
20
N
5
4.63
0.70
108.50
113.13
A
A
A
O4'
C1'
N9
A
A
A
23
23
23
N
5
5.15
0.70
108.50
113.65
A
A
A
O4'
C1'
N1
C
C
C
24
24
24
N
5
4.21
0.70
108.50
112.71
A
A
A
O4'
C1'
N9
G
G
G
25
25
25
N
5
-4.25
0.70
119.90
115.65
A
A
A
N3
C2
N2
G
G
G
26
26
26
N
5
4.70
0.70
108.50
113.20
A
A
A
O4'
C1'
N1
C
C
C
29
29
29
N
6
4.34
0.70
108.50
112.84
A
A
A
O4'
C1'
N1
C
C
C
4
4
4
N
6
6.42
0.70
108.50
114.92
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
6
4.83
0.70
108.50
113.33
A
A
A
O4'
C1'
N9
G
G
G
8
8
8
N
6
4.52
0.70
108.50
113.02
A
A
A
O4'
C1'
N1
C
C
C
9
9
9
N
6
4.48
0.70
108.50
112.98
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
6
5.25
0.70
108.50
113.75
A
A
A
O4'
C1'
N1
C
C
C
11
11
11
N
6
4.85
0.80
101.50
106.35
A
A
A
C3'
C2'
C1'
C
C
C
14
14
14
N
6
4.56
0.70
108.50
113.06
A
A
A
O4'
C1'
N1
C
C
C
16
16
16
N
6
4.95
0.70
108.50
113.45
A
A
A
O4'
C1'
N9
G
G
G
19
19
19
N
6
5.72
0.70
108.50
114.22
A
A
A
O4'
C1'
N1
C
C
C
20
20
20
N
6
-4.60
0.70
119.90
115.30
A
A
A
N3
C2
N2
G
G
G
32
32
32
N
6
5.96
0.70
108.50
114.46
A
A
A
O4'
C1'
N1
C
C
C
33
33
33
N
7
-4.97
0.70
119.90
114.93
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
7
-4.49
0.70
109.70
105.21
A
A
A
C1'
O4'
C4'
G
G
G
2
2
2
N
7
5.71
0.70
108.50
114.21
A
A
A
O4'
C1'
N9
G
G
G
2
2
2
N
7
5.11
0.70
108.50
113.61
A
A
A
O4'
C1'
N1
C
C
C
4
4
4
N
7
4.30
0.70
108.50
112.80
A
A
A
O4'
C1'
N9
G
G
G
6
6
6
N
7
5.23
0.70
108.50
113.73
A
A
A
O4'
C1'
N9
G
G
G
8
8
8
N
7
5.20
0.70
108.50
113.70
A
A
A
O4'
C1'
N1
C
C
C
9
9
9
N
7
3.62
0.60
118.90
122.52
A
A
A
N1
C2
O2
C
C
C
14
14
14
N
7
3.68
0.60
118.90
122.58
A
A
A
N1
C2
O2
C
C
C
16
16
16
N
7
4.62
0.70
108.50
113.12
A
A
A
O4'
C1'
N9
A
A
A
18
18
18
N
7
4.20
0.70
108.50
112.70
A
A
A
O4'
C1'
N1
C
C
C
20
20
20
N
7
4.86
0.70
108.50
113.36
A
A
A
O4'
C1'
N1
C
C
C
24
24
24
N
7
-3.02
0.50
120.30
117.28
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
215
215
215
N
1
B
ARG
202
46.15
76.71
1
B
SER
204
-122.75
-121.49
1
B
PRO
206
-77.73
33.55
1
B
ALA
216
-67.15
14.23
3
B
ARG
202
-157.82
79.45
3
B
SER
204
-72.50
36.95
4
B
ARG
202
30.83
88.26
4
B
SER
204
24.85
60.65
5
B
ARG
202
24.72
63.88
5
B
ALA
209
59.04
12.23
5
B
ALA
218
-147.47
50.14
6
B
ARG
202
-156.01
74.88
6
B
SER
204
-121.13
-95.93
6
B
ARG
205
51.35
70.06
6
B
SER
207
-55.35
170.30
7
B
ARG
202
-174.08
104.31
7
B
SER
204
34.64
53.41
7
B
ALA
218
-161.68
81.78
STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE
1
N
N
2
N
N
B
SER
207
B
SER
7
HELX_P
B
ALA
219
B
ALA
19
1
1
13
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
34
A
N3
C
34
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
34
A
O2
C
34
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
34
A
N4
C
34
1_555
hydrog
G-C PAIR
A
G
2
A
N2
G
2
1_555
A
C
33
A
O2
C
33
1_555
hydrog
G-C PAIR
A
G
2
A
N1
G
2
1_555
A
C
34
A
N3
C
34
1_555
hydrog
TYPE_28_PAIR
A
U
3
A
N3
U
3
1_555
A
G
32
A
O6
G
32
1_555
hydrog
TYPE_28_PAIR
A
U
3
A
O2
U
3
1_555
A
G
32
A
N1
G
32
1_555
hydrog
WATSON-CRICK
A
C
4
A
N3
C
4
1_555
A
G
31
A
N1
G
31
1_555
hydrog
WATSON-CRICK
A
C
4
A
N4
C
4
1_555
A
G
31
A
O6
G
31
1_555
hydrog
WATSON-CRICK
A
C
4
A
O2
C
4
1_555
A
G
31
A
N2
G
31
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
A
A
30
A
N1
A
30
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
A
A
30
A
N6
A
30
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
A
C
29
A
N3
C
29
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
A
C
29
A
O2
C
29
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
A
C
29
A
N4
C
29
1_555
hydrog
TYPE_8_PAIR
A
G
7
A
N1
G
7
1_555
A
A
28
A
N1
A
28
1_555
hydrog
TYPE_8_PAIR
A
G
7
A
O6
G
7
1_555
A
A
28
A
N6
A
28
1_555
hydrog
TYPE_3_PAIR
A
G
8
A
N1
G
8
1_555
A
G
26
A
O6
G
26
1_555
hydrog
TYPE_3_PAIR
A
G
8
A
O6
G
8
1_555
A
G
26
A
N1
G
26
1_555
hydrog
WATSON-CRICK
A
C
9
A
N3
C
9
1_555
A
G
25
A
N1
G
25
1_555
hydrog
WATSON-CRICK
A
C
9
A
N4
C
9
1_555
A
G
25
A
O6
G
25
1_555
hydrog
WATSON-CRICK
A
C
9
A
O2
C
9
1_555
A
G
25
A
N2
G
25
1_555
hydrog
WATSON-CRICK
A
G
10
A
N1
G
10
1_555
A
C
24
A
N3
C
24
1_555
hydrog
WATSON-CRICK
A
G
10
A
N2
G
10
1_555
A
C
24
A
O2
C
24
1_555
hydrog
WATSON-CRICK
A
G
10
A
O6
G
10
1_555
A
C
24
A
N4
C
24
1_555
hydrog
WATSON-CRICK
A
C
11
A
N3
C
11
1_555
A
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
11
A
N4
C
11
1_555
A
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
11
A
O2
C
11
1_555
A
G
22
A
N2
G
22
1_555
hydrog
WATSON-CRICK
A
A
12
A
N1
A
12
1_555
A
U
21
A
N3
U
21
1_555
hydrog
WATSON-CRICK
A
A
12
A
N6
A
12
1_555
A
U
21
A
O4
U
21
1_555
hydrog
WATSON-CRICK
A
G
13
A
N1
G
13
1_555
A
C
20
A
N3
C
20
1_555
hydrog
WATSON-CRICK
A
G
13
A
N2
G
13
1_555
A
C
20
A
O2
C
20
1_555
hydrog
WATSON-CRICK
A
G
13
A
O6
G
13
1_555
A
C
20
A
N4
C
20
1_555
hydrog
G-U MISPAIR
A
G
13
A
N2
G
13
1_555
A
U
21
A
O2
U
21
1_555
hydrog
C-G PAIR
A
C
14
A
O2
C
14
1_555
A
G
19
A
N1
G
19
1_555
hydrog
TYPE_11_PAIR
A
G
15
A
N2
G
15
1_555
A
A
18
A
N7
A
18
1_555
hydrog
TYPE_11_PAIR
A
G
15
A
N3
G
15
1_555
A
A
18
A
N6
A
18
1_555
DE-NOVO PROTEIN/RNA
peptide-RNA complex, RNA recognition, selected peptide, solution structure, DE-NOVO PROTEIN-RNA COMPLEX
1I9F
PDB
1
1I9F
1I9F
PDB
2
1I9F
1
34
1I9F
1
34
1I9F
A
1
1
34
201
219
1I9F
201
219
1I9F
B
2
1
19
1
P 1