0.009571
0.000000
0.000000
0.000000
0.011543
0.000000
0.000000
0.000000
0.026882
0.000000
0.000000
0.000000
Cho, S.W.
Lee, S.
Shin, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
104.480
86.630
37.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
311
863
878
10.1006/jmbi.2001.4919
11518536
The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
288
1
COLLIMATOR
AREA DETECTOR
1999-10-21
ENRAF-NONIUS FAST
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
1.5418
ROTATING ANODE
RIGAKU RU200H
34675.590
POLYGALACTURONASE
3.2.1.15
1
nat
polymer
586.542
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
180.156
alpha-D-mannopyranose
10
man
non-polymer
18.015
water
193
nat
water
no
no
ATTCTFSGSNGASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGETTFGYKEWSGPLISVSGSDLTITGAS
GHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDA
FDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNI
DTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVS
VSGGKTSSKCTNVPSGASC
ATTCTFSGSNGASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGETTFGYKEWSGPLISVSGSDLTITGAS
GHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDA
FDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNI
DTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVS
VSGGKTSSKCTNVPSGASC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aspergillus
sample
5053
Aspergillus aculeatus
1
1
49.32
VAPOR DIFFUSION, HANGING DROP
8.5
45% 1,6-HEXANEDIOL, 0.1M TRIS-HCL , 0.2M AMMONIUM ACETATE, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K
288
software
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Refinement description
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2001-09-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
2
0
2020-07-29
_software.name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
NAG
351
n
B
NAG
1
NAG
352
n
B
NAG
2
MAN
353
n
B
MAN
3
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
1BHE contains the same protein FROM ERWINIA CAROTOVORA SSP.CAROTOVORA
1CZF contains Endo-Polygalacturonase II From Aspergillus Niger
1RMG contains RHAMNOGALACTURONASE A
1IB4 contains the same protein at PH4.5
RCSB
Y
PDBJ
2001-03-22
REL
REL
oligosaccharide
DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
MAN
NAG
3
2
2
O1
HO4
sing
n
n
n
MAN
alpha-D-mannopyranose
HOH
water
MAN
405
3
MAN
MAN
405
A
MAN
407
3
MAN
MAN
407
A
MAN
409
3
MAN
MAN
409
A
MAN
413
3
MAN
MAN
413
A
MAN
414
3
MAN
MAN
414
A
MAN
416
3
MAN
MAN
416
A
MAN
418
3
MAN
MAN
418
A
MAN
423
3
MAN
MAN
423
A
MAN
424
3
MAN
MAN
424
A
MAN
434
3
MAN
MAN
434
A
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
512
4
HOH
HOH
512
A
HOH
513
4
HOH
HOH
513
A
HOH
514
4
HOH
HOH
514
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
523
4
HOH
HOH
523
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
547
4
HOH
HOH
547
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
554
4
HOH
HOH
554
A
HOH
555
4
HOH
HOH
555
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
559
4
HOH
HOH
559
A
HOH
560
4
HOH
HOH
560
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
564
4
HOH
HOH
564
A
HOH
565
4
HOH
HOH
565
A
HOH
566
4
HOH
HOH
566
A
HOH
567
4
HOH
HOH
567
A
HOH
568
4
HOH
HOH
568
A
HOH
569
4
HOH
HOH
569
A
HOH
570
4
HOH
HOH
570
A
HOH
571
4
HOH
HOH
571
A
HOH
572
4
HOH
HOH
572
A
HOH
573
4
HOH
HOH
573
A
HOH
574
4
HOH
HOH
574
A
HOH
575
4
HOH
HOH
575
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
579
4
HOH
HOH
579
A
HOH
580
4
HOH
HOH
580
A
HOH
581
4
HOH
HOH
581
A
HOH
582
4
HOH
HOH
582
A
HOH
583
4
HOH
HOH
583
A
HOH
584
4
HOH
HOH
584
A
HOH
585
4
HOH
HOH
585
A
HOH
586
4
HOH
HOH
586
A
HOH
587
4
HOH
HOH
587
A
HOH
588
4
HOH
HOH
588
A
HOH
589
4
HOH
HOH
589
A
HOH
590
4
HOH
HOH
590
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
HOH
599
4
HOH
HOH
599
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
688
4
HOH
HOH
688
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
ALA
1
n
1
ALA
1
A
THR
2
n
2
THR
2
A
THR
3
n
3
THR
3
A
CYS
4
n
4
CYS
4
A
THR
5
n
5
THR
5
A
PHE
6
n
6
PHE
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
SER
9
n
9
SER
9
A
ASN
10
n
10
ASN
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
SER
13
n
13
SER
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
SER
16
n
16
SER
16
A
LYS
17
n
17
LYS
17
A
SER
18
n
18
SER
18
A
LYS
19
n
19
LYS
19
A
THR
20
n
20
THR
20
A
SER
21
n
21
SER
21
A
CYS
22
n
22
CYS
22
A
SER
23
n
23
SER
23
A
THR
24
n
24
THR
24
A
ILE
25
n
25
ILE
25
A
VAL
26
n
26
VAL
26
A
LEU
27
n
27
LEU
27
A
SER
28
n
28
SER
28
A
ASN
29
n
29
ASN
29
A
VAL
30
n
30
VAL
30
A
ALA
31
n
31
ALA
31
A
VAL
32
n
32
VAL
32
A
PRO
33
n
33
PRO
33
A
SER
34
n
34
SER
34
A
GLY
35
n
35
GLY
35
A
THR
36
n
36
THR
36
A
THR
37
n
37
THR
37
A
LEU
38
n
38
LEU
38
A
ASP
39
n
39
ASP
39
A
LEU
40
n
40
LEU
40
A
THR
41
n
41
THR
41
A
LYS
42
n
42
LYS
42
A
LEU
43
n
43
LEU
43
A
ASN
44
n
44
ASN
44
A
ASP
45
n
45
ASP
45
A
GLY
46
n
46
GLY
46
A
THR
47
n
47
THR
47
A
HIS
48
n
48
HIS
48
A
VAL
49
n
49
VAL
49
A
ILE
50
n
50
ILE
50
A
PHE
51
n
51
PHE
51
A
SER
52
n
52
SER
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
THR
55
n
55
THR
55
A
THR
56
n
56
THR
56
A
PHE
57
n
57
PHE
57
A
GLY
58
n
58
GLY
58
A
TYR
59
n
59
TYR
59
A
LYS
60
n
60
LYS
60
A
GLU
61
n
61
GLU
61
A
TRP
62
n
62
TRP
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
PRO
65
n
65
PRO
65
A
LEU
66
n
66
LEU
66
A
ILE
67
n
67
ILE
67
A
SER
68
n
68
SER
68
A
VAL
69
n
69
VAL
69
A
SER
70
n
70
SER
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
ASP
73
n
73
ASP
73
A
LEU
74
n
74
LEU
74
A
THR
75
n
75
THR
75
A
ILE
76
n
76
ILE
76
A
THR
77
n
77
THR
77
A
GLY
78
n
78
GLY
78
A
ALA
79
n
79
ALA
79
A
SER
80
n
80
SER
80
A
GLY
81
n
81
GLY
81
A
HIS
82
n
82
HIS
82
A
SER
83
n
83
SER
83
A
ILE
84
n
84
ILE
84
A
ASN
85
n
85
ASN
85
A
GLY
86
n
86
GLY
86
A
ASP
87
n
87
ASP
87
A
GLY
88
n
88
GLY
88
A
SER
89
n
89
SER
89
A
ARG
90
n
90
ARG
90
A
TRP
91
n
91
TRP
91
A
TRP
92
n
92
TRP
92
A
ASP
93
n
93
ASP
93
A
GLY
94
n
94
GLY
94
A
GLN
95
n
95
GLU
95
A
GLY
96
n
96
GLY
96
A
GLY
97
n
97
GLY
97
A
ASN
98
n
98
ASN
98
A
GLY
99
n
99
GLY
99
A
GLY
100
n
100
GLY
100
A
LYS
101
n
101
LYS
101
A
THR
102
n
102
THR
102
A
LYS
103
n
103
LYS
103
A
PRO
104
n
104
PRO
104
A
LYS
105
n
105
LYS
105
A
PHE
106
n
106
PHE
106
A
PHE
107
n
107
PHE
107
A
ALA
108
n
108
ALA
108
A
ALA
109
n
109
ALA
109
A
HIS
110
n
110
HIS
110
A
SER
111
n
111
SER
111
A
LEU
112
n
112
LEU
112
A
THR
113
n
113
THR
113
A
ASN
114
n
114
ASN
114
A
SER
115
n
115
SER
115
A
VAL
116
n
116
VAL
116
A
ILE
117
n
117
ILE
117
A
SER
118
n
118
SER
118
A
GLY
119
n
119
GLY
119
A
LEU
120
n
120
LEU
120
A
LYS
121
n
121
LYS
121
A
ILE
122
n
122
ILE
122
A
VAL
123
n
123
VAL
123
A
ASN
124
n
124
ASN
124
A
SER
125
n
125
SER
125
A
PRO
126
n
126
PRO
126
A
VAL
127
n
127
VAL
127
A
GLN
128
n
128
GLN
128
A
VAL
129
n
129
VAL
129
A
PHE
130
n
130
PHE
130
A
SER
131
n
131
SER
131
A
VAL
132
n
132
VAL
132
A
ALA
133
n
133
ALA
133
A
GLY
134
n
134
GLY
134
A
SER
135
n
135
SER
135
A
ASP
136
n
136
ASP
136
A
TYR
137
n
137
TYR
137
A
LEU
138
n
138
LEU
138
A
THR
139
n
139
THR
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
ASP
142
n
142
ASP
142
A
ILE
143
n
143
ILE
143
A
THR
144
n
144
THR
144
A
ILE
145
n
145
ILE
145
A
ASP
146
n
146
ASP
146
A
ASN
147
n
147
ASN
147
A
SER
148
n
148
SER
148
A
ASP
149
n
149
ASP
149
A
GLY
150
n
150
GLY
150
A
ASP
151
n
151
ASP
151
A
ASP
152
n
152
ASP
152
A
ASN
153
n
153
ASN
153
A
GLY
154
n
154
GLY
154
A
GLY
155
n
155
GLY
155
A
HIS
156
n
156
HIS
156
A
ASN
157
n
157
ASN
157
A
THR
158
n
158
THR
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
PHE
161
n
161
PHE
161
A
ASP
162
n
162
ASP
162
A
ILE
163
n
163
ILE
163
A
GLY
164
n
164
GLY
164
A
THR
165
n
165
THR
165
A
SER
166
n
166
SER
166
A
THR
167
n
167
THR
167
A
TYR
168
n
168
TYR
168
A
VAL
169
n
169
VAL
169
A
THR
170
n
170
THR
170
A
ILE
171
n
171
ILE
171
A
SER
172
n
172
SER
172
A
GLY
173
n
173
GLY
173
A
ALA
174
n
174
ALA
174
A
THR
175
n
175
THR
175
A
VAL
176
n
176
VAL
176
A
TYR
177
n
177
TYR
177
A
ASN
178
n
178
ASN
178
A
GLN
179
n
179
GLN
179
A
ASP
180
n
180
ASP
180
A
ASP
181
n
181
ASP
181
A
CYS
182
n
182
CYS
182
A
VAL
183
n
183
VAL
183
A
ALA
184
n
184
ALA
184
A
VAL
185
n
185
VAL
185
A
ASN
186
n
186
ASN
186
A
SER
187
n
187
SER
187
A
GLY
188
n
188
GLY
188
A
GLU
189
n
189
GLU
189
A
ASN
190
n
190
ASN
190
A
ILE
191
n
191
ILE
191
A
TYR
192
n
192
TYR
192
A
PHE
193
n
193
PHE
193
A
SER
194
n
194
SER
194
A
GLY
195
n
195
GLY
195
A
GLY
196
n
196
GLY
196
A
TYR
197
n
197
TYR
197
A
CYS
198
n
198
CYS
198
A
SER
199
n
199
SER
199
A
GLY
200
n
200
GLY
200
A
GLY
201
n
201
GLY
201
A
HIS
202
n
202
HIS
202
A
GLY
203
n
203
GLY
203
A
LEU
204
n
204
LEU
204
A
SER
205
n
205
SER
205
A
ILE
206
n
206
ILE
206
A
GLY
207
n
207
GLY
207
A
SER
208
n
208
SER
208
A
VAL
209
n
209
VAL
209
A
GLY
210
n
210
GLY
210
A
GLY
211
n
211
GLY
211
A
ARG
212
n
212
ARG
212
A
SER
213
n
213
SER
213
A
ASP
214
n
214
ASP
214
A
ASN
215
n
215
ASN
215
A
THR
216
n
216
THR
216
A
VAL
217
n
217
VAL
217
A
LYS
218
n
218
LYS
218
A
ASN
219
n
219
ASN
219
A
VAL
220
n
220
VAL
220
A
THR
221
n
221
THR
221
A
PHE
222
n
222
PHE
222
A
VAL
223
n
223
VAL
223
A
ASP
224
n
224
ASP
224
A
SER
225
n
225
SER
225
A
THR
226
n
226
THR
226
A
ILE
227
n
227
ILE
227
A
ILE
228
n
228
ILE
228
A
ASN
229
n
229
ASN
229
A
SER
230
n
230
SER
230
A
ASP
231
n
231
ASP
231
A
ASN
232
n
232
ASN
232
A
GLY
233
n
233
GLY
233
A
VAL
234
n
234
VAL
234
A
ARG
235
n
235
ARG
235
A
ILE
236
n
236
ILE
236
A
LYS
237
n
237
LYS
237
A
THR
238
n
238
THR
238
A
ASN
239
n
239
ASN
239
A
ILE
240
n
240
ILE
240
A
ASP
241
n
241
ASP
241
A
THR
242
n
242
THR
242
A
THR
243
n
243
THR
243
A
GLY
244
n
244
GLY
244
A
SER
245
n
245
SER
245
A
VAL
246
n
246
VAL
246
A
SER
247
n
247
SER
247
A
ASP
248
n
248
ASP
248
A
VAL
249
n
249
VAL
249
A
THR
250
n
250
THR
250
A
TYR
251
n
251
TYR
251
A
LYS
252
n
252
LYS
252
A
ASP
253
n
253
ASP
253
A
ILE
254
n
254
ILE
254
A
THR
255
n
255
THR
255
A
LEU
256
n
256
LEU
256
A
THR
257
n
257
THR
257
A
SER
258
n
258
SER
258
A
ILE
259
n
259
ILE
259
A
ALA
260
n
260
ALA
260
A
LYS
261
n
261
LYS
261
A
TYR
262
n
262
TYR
262
A
GLY
263
n
263
GLY
263
A
ILE
264
n
264
ILE
264
A
VAL
265
n
265
VAL
265
A
VAL
266
n
266
VAL
266
A
GLN
267
n
267
GLN
267
A
GLN
268
n
268
GLN
268
A
ASN
269
n
269
ASN
269
A
TYR
270
n
270
TYR
270
A
GLY
271
n
271
GLY
271
A
ASP
272
n
272
ASP
272
A
THR
273
n
273
THR
273
A
SER
274
n
274
SER
274
A
SER
275
n
275
SER
275
A
THR
276
n
276
THR
276
A
PRO
277
n
277
PRO
277
A
THR
278
n
278
THR
278
A
THR
279
n
279
THR
279
A
GLY
280
n
280
GLY
280
A
VAL
281
n
281
VAL
281
A
PRO
282
n
282
PRO
282
A
ILE
283
n
283
ILE
283
A
THR
284
n
284
THR
284
A
ASP
285
n
285
ASP
285
A
PHE
286
n
286
PHE
286
A
VAL
287
n
287
VAL
287
A
LEU
288
n
288
LEU
288
A
ASP
289
n
289
ASP
289
A
ASN
290
n
290
ASN
290
A
VAL
291
n
291
VAL
291
A
HIS
292
n
292
HIS
292
A
GLY
293
n
293
GLY
293
A
SER
294
n
294
SER
294
A
VAL
295
n
295
VAL
295
A
VAL
296
n
296
VAL
296
A
SER
297
n
297
SER
297
A
SER
298
n
298
SER
298
A
GLY
299
n
299
GLY
299
A
THR
300
n
300
THR
300
A
ASN
301
n
301
ASN
301
A
ILE
302
n
302
ILE
302
A
LEU
303
n
303
LEU
303
A
ILE
304
n
304
ILE
304
A
SER
305
n
305
SER
305
A
CYS
306
n
306
CYS
306
A
GLY
307
n
307
GLY
307
A
SER
308
n
308
SER
308
A
GLY
309
n
309
GLY
309
A
SER
310
n
310
SER
310
A
CYS
311
n
311
CYS
311
A
SER
312
n
312
SER
312
A
ASP
313
n
313
ASP
313
A
TRP
314
n
314
TRP
314
A
THR
315
n
315
THR
315
A
TRP
316
n
316
TRP
316
A
THR
317
n
317
THR
317
A
ASP
318
n
318
ASP
318
A
VAL
319
n
319
VAL
319
A
SER
320
n
320
SER
320
A
VAL
321
n
321
VAL
321
A
SER
322
n
322
SER
322
A
GLY
323
n
323
GLY
323
A
GLY
324
n
324
GLY
324
A
LYS
325
n
325
LYS
325
A
THR
326
n
326
THR
326
A
SER
327
n
327
SER
327
A
SER
328
n
328
SER
328
A
LYS
329
n
329
LYS
329
A
CYS
330
n
330
CYS
330
A
THR
331
n
331
THR
331
A
ASN
332
n
332
ASN
332
A
VAL
333
n
333
VAL
333
A
PRO
334
n
334
PRO
334
A
SER
335
n
335
SER
335
A
GLY
336
n
336
GLY
336
A
ALA
337
n
337
ALA
337
A
SER
338
n
338
SER
338
A
CYS
339
n
339
CYS
339
A
author_defined_assembly
1
monomeric
A
SER
9
GLYCOSYLATION SITE
A
SER
9
SER
A
THR
24
GLYCOSYLATION SITE
A
THR
24
THR
A
THR
5
GLYCOSYLATION SITE
A
THR
5
THR
A
SER
23
GLYCOSYLATION SITE
A
SER
23
SER
A
SER
7
GLYCOSYLATION SITE
A
SER
7
SER
A
SER
18
GLYCOSYLATION SITE
A
SER
18
SER
A
SER
14
GLYCOSYLATION SITE
A
SER
14
SER
A
SER
16
GLYCOSYLATION SITE
A
SER
16
SER
A
SER
34
GLYCOSYLATION SITE
A
SER
34
SER
A
SER
13
GLYCOSYLATION SITE
A
SER
13
SER
A
ASN
219
GLYCOSYLATION SITE
A
ASN
219
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
4
A
N
CYS
4
A
O
THR
24
A
O
THR
24
A
N
ILE
25
A
N
ILE
25
A
O
HIS
48
A
O
HIS
48
A
N
VAL
49
A
N
VAL
49
A
O
THR
75
A
O
THR
75
A
N
ILE
76
A
N
ILE
76
A
O
VAL
116
A
O
VAL
116
A
N
ALA
108
A
N
ALA
108
A
O
ILE
67
A
O
ILE
67
A
N
SER
68
A
N
SER
68
A
O
LEU
38
A
O
LEU
38
A
O
LEU
38
A
O
LEU
38
A
N
SER
68
A
N
SER
68
A
O
ILE
67
A
O
ILE
67
A
N
ALA
108
A
N
ALA
108
A
O
PHE
107
A
O
PHE
107
A
N
SER
131
A
N
SER
131
A
N
VAL
132
A
N
VAL
132
A
O
ASP
162
A
O
ASP
162
A
N
ILE
163
A
N
ILE
163
A
O
ALA
184
A
O
ALA
184
A
O
VAL
183
A
O
VAL
183
A
N
SER
205
A
N
SER
205
A
N
LEU
204
A
N
LEU
204
A
O
GLY
233
A
O
GLY
233
A
N
GLY
233
A
N
GLY
233
A
O
TYR
262
A
O
TYR
262
A
N
GLY
263
A
N
GLY
263
A
O
THR
300
A
O
THR
300
A
O
THR
300
A
O
THR
300
A
N
GLY
263
A
N
GLY
263
A
O
TYR
262
A
O
TYR
262
A
N
GLY
233
A
N
GLY
233
A
O
GLY
233
A
O
GLY
233
A
N
LEU
204
A
N
LEU
204
A
N
SER
205
A
N
SER
205
A
O
VAL
183
A
O
VAL
183
A
N
ALA
184
A
N
ALA
184
A
O
PHE
161
A
O
PHE
161
A
N
ASP
162
A
N
ASP
162
A
O
PHE
130
A
O
PHE
130
A
N
SER
131
A
N
SER
131
A
O
PHE
107
A
O
PHE
107
A
N
ASN
114
A
N
ASN
114
A
O
ASP
136
A
O
ASP
136
A
N
TYR
137
A
N
TYR
137
A
O
THR
167
A
O
THR
167
A
N
TYR
168
A
N
TYR
168
A
O
GLU
189
A
O
GLU
189
A
N
GLY
188
A
N
GLY
188
A
O
THR
216
A
O
THR
216
A
N
VAL
217
A
N
VAL
217
A
O
SER
245
A
O
SER
245
A
O
VAL
246
A
O
VAL
246
A
N
THR
284
A
N
THR
284
A
O
ILE
283
A
O
ILE
283
A
N
SER
312
A
N
SER
312
A
N
SER
312
A
N
SER
312
A
O
ILE
283
A
O
ILE
283
A
N
THR
284
A
N
THR
284
A
O
VAL
246
A
O
VAL
246
A
O
SER
245
A
O
SER
245
A
N
VAL
217
A
N
VAL
217
A
O
THR
226
A
O
THR
226
A
N
CYS
198
A
N
CYS
198
A
N
SER
199
A
N
SER
199
A
O
VAL
176
A
O
VAL
176
A
O
THR
175
A
O
THR
175
A
N
ILE
145
A
N
ILE
145
A
O
THR
144
A
O
THR
144
A
N
ILE
122
A
N
ILE
122
A
O
LYS
121
A
O
LYS
121
A
N
ILE
84
A
N
ILE
84
A
N
ASN
85
A
N
ASN
85
A
O
THR
55
A
O
THR
55
A
O
THR
56
A
O
THR
56
A
N
VAL
32
A
N
VAL
32
1
9.28
1.40
123.60
132.88
A
A
A
CD
NE
CZ
ARG
ARG
ARG
212
212
212
N
1
15.10
2.10
122.30
137.40
A
A
A
C
N
CA
GLY
GLY
GLY
323
324
324
Y
1
A
A
CD
OE2
GLU
GLU
95
95
0.066
0.011
1.252
1.318
N
1
A
LEU
38
-68.98
98.17
1
A
ASP
93
-141.52
18.13
1
A
VAL
127
-145.79
-131.63
1
A
VAL
129
-94.20
-81.63
1
A
THR
158
-97.18
44.68
1
A
ASP
159
-39.70
131.47
1
A
THR
165
37.35
54.46
1
A
ASP
180
-147.04
-159.87
1
A
ASN
190
62.24
63.55
1
A
ASN
219
59.34
75.74
1
A
ASP
272
-154.41
79.71
0.215
0.171
0.165
0.165
2.00
44.74
1060
21242
21242
4.990
RANDOM
1
THROUGHOUT
0
0
MIR
Engh & Huber
0.25
0.19
5.0
0.22
0.15
2.00
44.74
193
2775
149
0
2433
0.005
1.3
2.36
1.82
0.267
0.020
0.202
2.13
172
2976
81.8
3.3
2.0
50.0
1IA5
52967
23026
2
4
0.056
1
11.5
2.3
85.1
0.124
2.00
2.13
1
5.3
81.8
data collection
MADNESS
data scaling
SCALA
phasing
SHARP
refinement
CNS
data reduction
MADNESS
data scaling
CCP4
(SCALA)
polygalacturonase (E.C.3.2.1.15)
POLYGALACTURONASE FROM ASPERGILLUS ACULEATUS
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ASN
10
A
ASN
10
HELX_P
A
LYS
19
A
LYS
19
1
1
10
A
THR
20
A
THR
20
HELX_P
A
CYS
22
A
CYS
22
5
2
3
A
ASP
87
A
ASP
87
HELX_P
A
TRP
91
A
TRP
91
5
3
5
A
SER
148
A
SER
148
HELX_P
A
ASP
151
A
ASP
151
5
4
4
disulf
2.041
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
22
A
SG
CYS
22
1_555
disulf
2.007
A
CYS
182
A
SG
CYS
182
1_555
A
CYS
198
A
SG
CYS
198
1_555
disulf
2.022
A
CYS
306
A
SG
CYS
306
1_555
A
CYS
311
A
SG
CYS
311
1_555
disulf
1.996
A
CYS
330
A
SG
CYS
330
1_555
A
CYS
339
A
SG
CYS
339
1_555
covale
1.391
one
O-Glycosylation
A
THR
5
A
OG1
THR
5
1_555
A
MAN
405
C
C1
MAN
1_555
covale
1.395
one
O-Glycosylation
A
SER
7
A
OG
SER
7
1_555
A
MAN
407
D
C1
MAN
1_555
covale
1.388
one
O-Glycosylation
A
SER
9
A
OG
SER
9
1_555
A
MAN
409
E
C1
MAN
1_555
covale
1.401
one
O-Glycosylation
A
SER
13
A
OG
SER
13
1_555
A
MAN
413
F
C1
MAN
1_555
covale
1.397
one
O-Glycosylation
A
SER
14
A
OG
SER
14
1_555
A
MAN
414
G
C1
MAN
1_555
covale
1.398
one
O-Glycosylation
A
SER
16
A
OG
SER
16
1_555
A
MAN
416
H
C1
MAN
1_555
covale
1.395
one
O-Glycosylation
A
SER
18
A
OG
SER
18
1_555
A
MAN
418
I
C1
MAN
1_555
covale
1.393
one
O-Glycosylation
A
SER
23
A
OG
SER
23
1_555
A
MAN
423
J
C1
MAN
1_555
covale
1.390
one
O-Glycosylation
A
THR
24
A
OG1
THR
24
1_555
A
MAN
424
K
C1
MAN
1_555
covale
1.399
one
O-Glycosylation
A
SER
34
A
OG
SER
34
1_555
A
MAN
434
L
C1
MAN
1_555
covale
1.454
one
N-Glycosylation
A
ASN
219
A
ND2
ASN
219
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.382
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.342
both
B
NAG
2
B
O4
NAG
1_555
B
MAN
3
B
C1
MAN
1_555
HYDROLASE
POLYGALACTURONASE, GLYCOSYLHYDROLASE, HYDROLASE
A
GLY
64
A
GLY
64
1
A
PRO
65
A
PRO
65
0.76
A
GLY
207
A
GLY
207
1
A
SER
208
A
SER
208
4.49
AAC23565
GB
1
40
3220207
40
378
1IA5
1
339
3220207
A
1
1
339
40
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
THR
3
A
THR
3
A
SER
7
A
SER
7
A
THR
24
A
THR
24
A
SER
28
A
SER
28
A
HIS
48
A
HIS
48
A
SER
52
A
SER
52
A
THR
75
A
THR
75
A
GLY
78
A
GLY
78
A
PHE
107
A
PHE
107
A
SER
118
A
SER
118
A
ILE
67
A
ILE
67
A
SER
72
A
SER
72
A
LEU
38
A
LEU
38
A
LEU
40
A
LEU
40
A
ILE
67
A
ILE
67
A
SER
72
A
SER
72
A
PHE
107
A
PHE
107
A
SER
118
A
SER
118
A
PHE
130
A
PHE
130
A
ALA
133
A
ALA
133
A
PHE
161
A
PHE
161
A
GLY
164
A
GLY
164
A
VAL
183
A
VAL
183
A
VAL
185
A
VAL
185
A
LEU
204
A
LEU
204
A
VAL
209
A
VAL
209
A
ASN
232
A
ASN
232
A
ASN
239
A
ASN
239
A
TYR
262
A
TYR
262
A
TYR
270
A
TYR
270
A
THR
300
A
THR
300
A
SER
305
A
SER
305
A
TYR
262
A
TYR
262
A
TYR
270
A
TYR
270
A
ASN
232
A
ASN
232
A
ASN
239
A
ASN
239
A
LEU
204
A
LEU
204
A
VAL
209
A
VAL
209
A
VAL
183
A
VAL
183
A
VAL
185
A
VAL
185
A
PHE
161
A
PHE
161
A
GLY
164
A
GLY
164
A
PHE
130
A
PHE
130
A
ALA
133
A
ALA
133
A
PHE
107
A
PHE
107
A
SER
118
A
SER
118
A
ASP
136
A
ASP
136
A
LYS
141
A
LYS
141
A
THR
167
A
THR
167
A
SER
172
A
SER
172
A
GLY
188
A
GLY
188
A
SER
194
A
SER
194
A
THR
216
A
THR
216
A
ILE
228
A
ILE
228
A
SER
245
A
SER
245
A
ILE
259
A
ILE
259
A
ILE
283
A
ILE
283
A
VAL
295
A
VAL
295
A
CYS
311
A
CYS
311
A
SER
322
A
SER
322
A
ILE
283
A
ILE
283
A
VAL
295
A
VAL
295
A
SER
245
A
SER
245
A
ILE
259
A
ILE
259
A
THR
216
A
THR
216
A
ILE
228
A
ILE
228
A
TYR
197
A
TYR
197
A
SER
199
A
SER
199
A
THR
175
A
THR
175
A
TYR
177
A
TYR
177
A
THR
144
A
THR
144
A
ASP
146
A
ASP
146
A
LYS
121
A
LYS
121
A
VAL
123
A
VAL
123
A
SER
83
A
SER
83
A
ASN
85
A
ASN
85
A
GLU
54
A
GLU
54
A
PHE
57
A
PHE
57
A
ALA
31
A
ALA
31
A
VAL
32
A
VAL
32
18
P 21 21 2