0.011609
0.006702
0.000000
0.000000
0.013405
0.000000
0.000000
0.000000
0.010220
0.00000
0.00000
0.00000
Stroppolo, M.E.
Pesce, A.
D'Orazio, M.
O'Neill, P.
Bordo, D.
Rosano, C.
Milani, M.
Battistoni, A.
Bolognesi, M.
Desideri, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
86.140
86.140
97.846
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CU
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
308
555
563
10.1006/jmbi.2001.4606
11327787
Single mutations at the subunit interface modulate copper reactivity in Photobacterium leiognathi Cu,Zn superoxide dismutase.
2001
10.2210/pdb1ibh/pdb
pdb_00001ibh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
IMAGE PLATE
1999-07-02
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
X11
EMBL/DESY, HAMBURG
1.0
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
15795.815
CU,ZN SUPEROXIDE DISMUTASE
1.15.1.1
M41I
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
63.546
COPPER (II) ION
1
syn
non-polymer
18.015
water
73
nat
water
no
no
QDLTVKMTDLQTGKPVGTIELSQNKYGVVFIPELADLTPGIHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHG
FPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ
QDLTVKMTDLQTGKPVGTIELSQNKYGVVFIPELADLTPGIHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHG
FPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Photobacterium
Escherichia
sample
658
Photobacterium leiognathi
562
Escherichia coli
1
2.21
44.35
VAPOR DIFFUSION, HANGING DROP
4.5
PEG 8k, NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 301K
301
database_2
diffrn_source
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
Refinement description
1
0
2001-05-09
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
P.leiognathi Cu,Zn SOD
wild type
P.leiognathi Cu,Zn SOD W83Y mutation
P.leiognathi Cu,Zn SOD W83F mutation
P.leiognathi Cu,Zn SOD V29A mutation
P.leiognathi Cu,Zn SOD V29G mutation
RCSB
Y
RCSB
2001-03-28
REL
REL
ZN
ZINC ION
CU
COPPER (II) ION
HOH
water
1BZO
P.leiognathi Cu,Zn SOD wild type
PDB
experimental model
ZN2
1
2
ZN
ZN
201
A
CU2
2
3
CU
CU
202
A
WAT
3
4
HOH
HOH
203
A
WAT
4
4
HOH
HOH
204
A
WAT
5
4
HOH
HOH
205
A
WAT
6
4
HOH
HOH
206
A
WAT
7
4
HOH
HOH
207
A
WAT
8
4
HOH
HOH
208
A
WAT
9
4
HOH
HOH
209
A
WAT
10
4
HOH
HOH
210
A
WAT
11
4
HOH
HOH
211
A
WAT
12
4
HOH
HOH
212
A
WAT
13
4
HOH
HOH
213
A
WAT
15
4
HOH
HOH
214
A
WAT
16
4
HOH
HOH
215
A
WAT
17
4
HOH
HOH
216
A
WAT
18
4
HOH
HOH
217
A
WAT
19
4
HOH
HOH
218
A
WAT
20
4
HOH
HOH
219
A
WAT
22
4
HOH
HOH
220
A
WAT
23
4
HOH
HOH
221
A
WAT
25
4
HOH
HOH
222
A
WAT
26
4
HOH
HOH
223
A
WAT
27
4
HOH
HOH
224
A
WAT
28
4
HOH
HOH
225
A
WAT
30
4
HOH
HOH
226
A
WAT
32
4
HOH
HOH
227
A
WAT
34
4
HOH
HOH
228
A
WAT
35
4
HOH
HOH
229
A
WAT
36
4
HOH
HOH
230
A
WAT
41
4
HOH
HOH
231
A
WAT
42
4
HOH
HOH
232
A
WAT
43
4
HOH
HOH
233
A
WAT
47
4
HOH
HOH
234
A
WAT
49
4
HOH
HOH
235
A
WAT
51
4
HOH
HOH
236
A
WAT
53
4
HOH
HOH
237
A
WAT
54
4
HOH
HOH
238
A
WAT
55
4
HOH
HOH
239
A
WAT
59
4
HOH
HOH
240
A
WAT
60
4
HOH
HOH
241
A
WAT
64
4
HOH
HOH
242
A
WAT
65
4
HOH
HOH
243
A
WAT
66
4
HOH
HOH
244
A
WAT
68
4
HOH
HOH
245
A
WAT
69
4
HOH
HOH
246
A
WAT
70
4
HOH
HOH
247
A
WAT
71
4
HOH
HOH
248
A
WAT
72
4
HOH
HOH
249
A
WAT
75
4
HOH
HOH
250
A
WAT
76
4
HOH
HOH
251
A
WAT
79
4
HOH
HOH
252
A
WAT
80
4
HOH
HOH
253
A
WAT
81
4
HOH
HOH
254
A
WAT
82
4
HOH
HOH
255
A
WAT
83
4
HOH
HOH
256
A
WAT
85
4
HOH
HOH
257
A
WAT
88
4
HOH
HOH
258
A
WAT
89
4
HOH
HOH
259
A
WAT
90
4
HOH
HOH
260
A
WAT
93
4
HOH
HOH
261
A
WAT
94
4
HOH
HOH
262
A
WAT
95
4
HOH
HOH
263
A
WAT
98
4
HOH
HOH
264
A
WAT
99
4
HOH
HOH
265
A
WAT
100
4
HOH
HOH
266
A
WAT
101
4
HOH
HOH
267
A
WAT
103
4
HOH
HOH
268
A
WAT
104
4
HOH
HOH
269
A
WAT
105
4
HOH
HOH
270
A
WAT
109
4
HOH
HOH
271
A
WAT
111
4
HOH
HOH
272
A
WAT
112
4
HOH
HOH
273
A
WAT
121
4
HOH
HOH
274
A
WAT
122
4
HOH
HOH
275
A
ALA
1
n
1
GLN
1
A
ALA
2
n
2
ASP
2
A
LEU
3
n
3
LEU
3
A
THR
4
n
4
THR
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
MET
7
n
7
MET
7
A
THR
8
n
8
THR
8
A
ASP
9
n
9
ASP
9
A
LEU
10
n
10
LEU
10
A
GLN
11
n
11
GLN
11
A
THR
12
n
12
THR
12
A
GLY
13
n
13
GLY
13
A
LYS
14
n
14
LYS
14
A
PRO
15
n
15
PRO
15
A
VAL
16
n
16
VAL
16
A
GLY
17
n
17
GLY
17
A
THR
18
n
18
THR
18
A
ILE
19
n
19
ILE
19
A
GLU
20
n
20
GLU
20
A
LEU
21
n
21
LEU
21
A
SER
22
n
22
SER
22
A
GLN
23
n
23
GLN
23
A
ASN
24
n
24
ASN
24
A
LYS
25
n
25
LYS
25
A
TYR
26
n
26
TYR
26
A
GLY
27
n
27
GLY
27
A
VAL
28
n
28
VAL
28
A
VAL
29
n
29
VAL
29
A
PHE
30
n
30
PHE
30
A
ILE
31
n
31
ILE
31
A
PRO
32
n
32
PRO
32
A
GLU
33
n
33
GLU
33
A
LEU
34
n
34
LEU
34
A
ALA
35
n
35
ALA
35
A
ASP
36
n
36
ASP
36
A
LEU
37
n
37
LEU
37
A
THR
38
n
38
THR
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ILE
41
n
41
ILE
41
A
HIS
42
n
42
HIS
42
A
GLY
43
n
43
GLY
43
A
PHE
44
n
44
PHE
44
A
HIS
45
n
45
HIS
45
A
ILE
46
n
46
ILE
46
A
HIS
47
n
47
HIS
47
A
GLN
48
n
48
GLN
48
A
ASN
49
n
49
ASN
49
A
GLY
50
n
50
GLY
50
A
SER
51
n
51
SER
51
A
CYS
52
n
52
CYS
52
A
ALA
53
n
53
ALA
53
A
SER
54
n
54
SER
54
A
SER
55
n
55
SER
55
A
GLU
56
n
56
GLU
56
A
LYS
57
n
57
LYS
57
A
ASP
58
n
58
ASP
58
A
GLY
59
n
59
GLY
59
A
LYS
60
n
60
LYS
60
A
VAL
61
n
61
VAL
61
A
VAL
62
n
62
VAL
62
A
LEU
63
n
63
LEU
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
ALA
66
n
66
ALA
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
GLY
69
n
69
GLY
69
A
HIS
70
n
70
HIS
70
A
TYR
71
n
71
TYR
71
A
ASP
72
n
72
ASP
72
A
PRO
73
n
73
PRO
73
A
GLU
74
n
74
GLU
74
A
HIS
75
n
75
HIS
75
A
THR
76
n
76
THR
76
A
ASN
77
n
77
ASN
77
A
LYS
78
n
78
LYS
78
A
HIS
79
n
79
HIS
79
A
GLY
80
n
80
GLY
80
A
PHE
81
n
81
PHE
81
A
PRO
82
n
82
PRO
82
A
TRP
83
n
83
TRP
83
A
THR
84
n
84
THR
84
A
ASP
85
n
85
ASP
85
A
ASP
86
n
86
ASP
86
A
ASN
87
n
87
ASN
87
A
HIS
88
n
88
HIS
88
A
LYS
89
n
89
LYS
89
A
GLY
90
n
90
GLY
90
A
ASP
91
n
91
ASP
91
A
LEU
92
n
92
LEU
92
A
PRO
93
n
93
PRO
93
A
ALA
94
n
94
ALA
94
A
LEU
95
n
95
LEU
95
A
PHE
96
n
96
PHE
96
A
VAL
97
n
97
VAL
97
A
SER
98
n
98
SER
98
A
ALA
99
n
99
ALA
99
A
ASN
100
n
100
ASN
100
A
GLY
101
n
101
GLY
101
A
LEU
102
n
102
LEU
102
A
ALA
103
n
103
ALA
103
A
THR
104
n
104
THR
104
A
ASN
105
n
105
ASN
105
A
PRO
106
n
106
PRO
106
A
VAL
107
n
107
VAL
107
A
LEU
108
n
108
LEU
108
A
ALA
109
n
109
ALA
109
A
PRO
110
n
110
PRO
110
A
ARG
111
n
111
ARG
111
A
LEU
112
n
112
LEU
112
A
THR
113
n
113
THR
113
A
LEU
114
n
114
LEU
114
A
LYS
115
n
115
LYS
115
A
GLU
116
n
116
GLU
116
A
LEU
117
n
117
LEU
117
A
LYS
118
n
118
LYS
118
A
GLY
119
n
119
GLY
119
A
HIS
120
n
120
HIS
120
A
ALA
121
n
121
ALA
121
A
ILE
122
n
122
ILE
122
A
MET
123
n
123
MET
123
A
ILE
124
n
124
ILE
124
A
HIS
125
n
125
HIS
125
A
ALA
126
n
126
ALA
126
A
GLY
127
n
127
GLY
127
A
GLY
128
n
128
GLY
128
A
ASP
129
n
129
ASP
129
A
ASN
130
n
130
ASN
130
A
HIS
131
n
131
HIS
131
A
SER
132
n
132
SER
132
A
ASP
133
n
133
ASP
133
A
MET
134
n
134
MET
134
A
PRO
135
n
135
PRO
135
A
LYS
136
n
136
LYS
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
GLY
139
n
139
GLY
139
A
GLY
140
n
140
GLY
140
A
GLY
141
n
141
GLY
141
A
GLY
142
n
142
GLY
142
A
ALA
143
n
143
ALA
143
A
ARG
144
n
144
ARG
144
A
VAL
145
n
145
VAL
145
A
ALA
146
n
146
ALA
146
A
CYS
147
n
147
CYS
147
A
GLY
148
n
148
GLY
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
GLN
151
n
151
GLN
151
A
author_defined_assembly
2
dimeric
A
HIS
45
A
ND1
HIS
45
1_555
A
CU
202
C
CU
CU
1_555
A
HIS
47
A
NE2
HIS
47
1_555
149.6
A
HIS
45
A
ND1
HIS
45
1_555
A
CU
202
C
CU
CU
1_555
A
HIS
70
A
NE2
HIS
70
1_555
79.6
A
HIS
47
A
NE2
HIS
47
1_555
A
CU
202
C
CU
CU
1_555
A
HIS
70
A
NE2
HIS
70
1_555
95.4
A
HIS
45
A
ND1
HIS
45
1_555
A
CU
202
C
CU
CU
1_555
A
HIS
125
A
NE2
HIS
125
1_555
102.0
A
HIS
47
A
NE2
HIS
47
1_555
A
CU
202
C
CU
CU
1_555
A
HIS
125
A
NE2
HIS
125
1_555
107.1
A
HIS
70
A
NE2
HIS
70
1_555
A
CU
202
C
CU
CU
1_555
A
HIS
125
A
NE2
HIS
125
1_555
115.6
A
HIS
70
A
ND1
HIS
70
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
79
A
ND1
HIS
79
1_555
104.6
A
HIS
70
A
ND1
HIS
70
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
88
A
ND1
HIS
88
1_555
100.7
A
HIS
79
A
ND1
HIS
79
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
88
A
ND1
HIS
88
1_555
121.4
A
HIS
70
A
ND1
HIS
70
1_555
A
ZN
201
B
ZN
ZN
1_555
A
ASP
91
A
OD1
ASP
91
1_555
111.2
A
HIS
79
A
ND1
HIS
79
1_555
A
ZN
201
B
ZN
ZN
1_555
A
ASP
91
A
OD1
ASP
91
1_555
96.5
A
HIS
88
A
ND1
HIS
88
1_555
A
ZN
201
B
ZN
ZN
1_555
A
ASP
91
A
OD1
ASP
91
1_555
121.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_565
x-y+2/3,-y+4/3,-z+1/3
crystal symmetry operation
0.0000000000
99.4659043760
32.6153333333
A
N
HIS
47
A
N
HIS
47
A
O
ALA
121
A
O
ALA
121
A
O
ILE
124
A
O
ILE
124
A
N
VAL
145
A
N
VAL
145
A
O
CYS
147
A
O
CYS
147
A
N
THR
8
A
N
THR
8
A
O
MET
7
A
O
MET
7
A
N
VAL
16
A
N
VAL
16
A
N
ASN
24
A
N
ASN
24
A
O
GLY
27
A
O
GLY
27
A
N
PHE
30
A
N
PHE
30
A
O
VAL
107
A
O
VAL
107
A
O
HIS
42
A
O
HIS
42
A
N
LEU
95
A
N
LEU
95
A
N
LYS
57
A
N
LYS
57
A
O
LYS
60
A
O
LYS
60
1
A
CG
GLN
1
A
CG
GLN
1
1
Y
1
A
CD
GLN
1
A
CD
GLN
1
1
Y
1
A
OE1
GLN
1
A
OE1
GLN
1
1
Y
1
A
NE2
GLN
1
A
NE2
GLN
1
1
Y
1
A
CB
GLN
1
A
CB
GLN
1
0
Y
1
A
CG
ASP
2
A
CG
ASP
2
1
Y
1
A
OD1
ASP
2
A
OD1
ASP
2
1
Y
1
A
OD2
ASP
2
A
OD2
ASP
2
1
Y
1
A
CB
ASP
2
A
CB
ASP
2
0
Y
1
A
CG
LEU
3
A
CG
LEU
3
0
Y
1
A
CD1
LEU
3
A
CD1
LEU
3
0
Y
1
A
CD2
LEU
3
A
CD2
LEU
3
0
Y
1
A
CD
LYS
6
A
CD
LYS
6
0
Y
1
A
CE
LYS
6
A
CE
LYS
6
0
Y
1
A
NZ
LYS
6
A
NZ
LYS
6
0
Y
1
A
CE
LYS
14
A
CE
LYS
14
0
Y
1
A
NZ
LYS
14
A
NZ
LYS
14
0
Y
1
A
CG
GLU
20
A
CG
GLU
20
0
Y
1
A
CD
GLU
20
A
CD
GLU
20
0
Y
1
A
OE1
GLU
20
A
OE1
GLU
20
0
Y
1
A
OE2
GLU
20
A
OE2
GLU
20
0
Y
1
A
CG
LYS
57
A
CG
LYS
57
0
Y
1
A
CD
LYS
57
A
CD
LYS
57
0
Y
1
A
CE
LYS
57
A
CE
LYS
57
0
Y
1
A
NZ
LYS
57
A
NZ
LYS
57
0
Y
1
A
CG
LYS
78
A
CG
LYS
78
0
Y
1
A
CD
LYS
78
A
CD
LYS
78
0
Y
1
A
CG
PHE
96
A
CG
PHE
96
0
Y
1
A
CD1
PHE
96
A
CD1
PHE
96
0
Y
1
A
CD2
PHE
96
A
CD2
PHE
96
0
Y
1
A
CE1
PHE
96
A
CE1
PHE
96
0
Y
1
A
CE2
PHE
96
A
CE2
PHE
96
0
Y
1
A
CZ
PHE
96
A
CZ
PHE
96
0
Y
1
A
CD
LYS
115
A
CD
LYS
115
0
Y
1
A
CE
LYS
115
A
CE
LYS
115
0
Y
1
A
NZ
LYS
115
A
NZ
LYS
115
0
Y
1
A
CG
LYS
118
A
CG
LYS
118
0
Y
1
A
CD
LYS
118
A
CD
LYS
118
0
Y
1
A
CE
LYS
118
A
CE
LYS
118
0
Y
1
A
NZ
LYS
118
A
NZ
LYS
118
0
Y
1
A
CB
GLN
151
A
CB
GLN
151
0
Y
1
A
CG
GLN
151
A
CG
GLN
151
0
Y
1
A
CD
GLN
151
A
CD
GLN
151
0
Y
1
A
OE1
GLN
151
A
OE1
GLN
151
0
Y
1
A
NE2
GLN
151
A
NE2
GLN
151
0
Y
1
A
ASP
2
-175.71
-69.19
1
A
GLN
48
-56.34
-75.50
1
A
ASP
86
-81.70
44.20
1
A
HIS
88
-30.85
127.99
1
A
ASP
129
-164.94
105.95
0.287
0.229
2.0
18
944
9449
9449
99.6
random
1
0
0
FOURIER SYNTHESIS
P.leiognathi Cu,Zn SOD wild type
Engh & Huber
2.0
18
73
1178
2
0
1103
0.005
1.23
30
2.0
18
1IBH
9449
9449
0
0
0.063
0.063
1
26
11.3
99.6
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
X-RAY 3D STRUCTURE OF P.LEIOGNATHI CU,ZN SOD MUTANT M41I
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
64
A
GLY
64
HELX_P
A
GLY
68
A
GLY
68
5
1
5
A
THR
113
A
THR
113
HELX_P
A
LYS
118
A
LYS
118
1
2
6
A
LYS
136
A
LYS
136
HELX_P
A
GLY
141
A
GLY
141
5
3
6
disulf
2.037
A
CYS
52
A
SG
CYS
52
1_555
A
CYS
147
A
SG
CYS
147
1_555
metalc
2.207
A
HIS
45
A
ND1
HIS
45
1_555
A
CU
202
C
CU
CU
1_555
metalc
2.219
A
HIS
47
A
NE2
HIS
47
1_555
A
CU
202
C
CU
CU
1_555
metalc
2.211
A
HIS
70
A
ND1
HIS
70
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.592
A
HIS
70
A
NE2
HIS
70
1_555
A
CU
202
C
CU
CU
1_555
metalc
2.152
A
HIS
79
A
ND1
HIS
79
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.285
A
HIS
88
A
ND1
HIS
88
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
1.902
A
ASP
91
A
OD1
ASP
91
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.238
A
HIS
125
A
NE2
HIS
125
1_555
A
CU
202
C
CU
CU
1_555
OXIDOREDUCTASE
prokaryotic superoxide dismutase, subunit interaction, OXIDOREDUCTASE
A
MET
134
A
MET
134
1
A
PRO
135
A
PRO
135
-0.05
SODC_PHOLE
UNP
1
23
P00446
QDLTVKMTDLQTGKPVGTIELSQNKYGVVFTPELADLTPGMHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHG
FPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ
23
173
1IBH
1
151
P00446
A
1
1
151
1
THR
conflict
ILE
31
1IBH
A
P00446
UNP
53
31
1
MET
engineered mutation
ILE
41
1IBH
A
P00446
UNP
63
41
7
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
44
A
PHE
44
A
HIS
47
A
HIS
47
A
ALA
121
A
ALA
121
A
HIS
125
A
HIS
125
A
ARG
144
A
ARG
144
A
VAL
149
A
VAL
149
A
LEU
3
A
LEU
3
A
ASP
9
A
ASP
9
A
PRO
15
A
PRO
15
A
ASN
24
A
ASN
24
A
GLY
27
A
GLY
27
A
LEU
34
A
LEU
34
A
VAL
107
A
VAL
107
A
ALA
109
A
ALA
109
A
GLY
40
A
GLY
40
A
HIS
42
A
HIS
42
A
LEU
95
A
LEU
95
A
VAL
97
A
VAL
97
A
SER
55
A
SER
55
A
LYS
57
A
LYS
57
A
LYS
60
A
LYS
60
A
VAL
62
A
VAL
62
BINDING SITE FOR RESIDUE ZN A 201
A
ZN
201
Software
4
BINDING SITE FOR RESIDUE CU A 202
A
CU
202
Software
4
A
HIS
70
A
HIS
70
4
1_555
A
HIS
79
A
HIS
79
4
1_555
A
HIS
88
A
HIS
88
4
1_555
A
ASP
91
A
ASP
91
4
1_555
A
HIS
45
A
HIS
45
4
1_555
A
HIS
47
A
HIS
47
4
1_555
A
HIS
70
A
HIS
70
4
1_555
A
HIS
125
A
HIS
125
4
1_555
155
H 3 2