0.055960 0.000000 0.000000 0.000000 0.031696 0.000000 0.000000 0.000000 0.022432 0.000000 0.000000 0.000000 Dauter, Z. Adamiak, D.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 17.870 31.550 44.580 C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C10 H26 N4 202.340 SPERMINE non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C N 13 N N N 14 N C N 15 N O N 16 N N N 17 N C N 18 N N N 19 N C N 20 N C N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 75 N MG N 76 N N N 77 N C N 78 N C N 79 N C N 80 N N N 81 N C N 82 N C N 83 N C N 84 N C N 85 N N N 86 N C N 87 N C N 88 N C N 89 N N N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 57 990 995 10.1107/S0907444901006382 11418767 Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy. 2001 10.2210/pdb1ick/pdb pdb_00001ick 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 mirrors CCD 2000-08-15 ADSC QUANTUM 4 Si 111 CHANNEL CUT DOUBLE SINGLE WAVELENGTH M x-ray 1 0.98 1.0 X8C NSLS 0.98 SYNCHROTRON NSLS BEAMLINE X8C 1810.205 5'-D(*CP*GP*CP*GP*CP*G)-3' 2 syn polymer 202.340 SPERMINE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 88 nat water no no (DC)(DG)(DC)(DG)(DC)(DG) CGCGCG A,B polydeoxyribonucleotide n n n n n n 1 1.74 29.13 VAPOR DIFFUSION, HANGING DROP 7.0 30 mM cacodylate buffer, 15 mM MgCl2, 10 mM spermine, 5% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K 293.0 cacodylate buffer 1 MgCl2 1 spermine 1 MPD 1 MPD 2 1.854 1 19 A 1 B 16 0.892 A_DC1:DG16_B 1 0.295 -0.271 0.128 -0.110 -6.625 1 19 A 2 B 15 1.648 A_DG2:DC15_B 2 -2.484 0.284 -0.093 -0.124 4.643 1 19 A 3 B 14 1.655 A_DC3:DG14_B 3 -3.397 -0.245 -0.052 -0.121 -6.809 1 19 A 4 B 13 2.799 A_DG4:DC13_B 4 -0.960 0.175 0.067 -0.117 1.142 1 19 A 5 B 12 2.839 A_DC5:DG12_B 5 0.071 -0.139 -0.013 -0.097 5.657 1 19 A 6 B 11 2.573 A_DG6:DC11_B 6 5.498 0.335 0.188 -0.147 5.711 -6.959 A A 1 2 27.924 B B 16 15 3.671 -3.250 0.071 5.349 AA_DC1DG2:DC15DG16_BB 1 0.751 6.454 -6.108 -24.861 5.023 3.128 -52.207 A A 2 3 6.871 B B 15 14 3.260 -6.034 -0.073 -1.049 AA_DG2DC3:DG14DC15_BB 2 -0.084 -0.096 -51.882 1.584 -0.088 6.013 -6.792 A A 3 4 30.514 B B 14 13 3.791 -3.440 -0.034 5.475 AA_DC3DG4:DC13DG14_BB 3 -0.714 -6.336 -5.813 -23.654 -4.973 3.298 -53.588 A A 4 5 2.291 B B 13 12 3.331 -2.065 -0.183 -0.910 AA_DG4DC5:DG12DC13_BB 4 0.665 0.738 -53.548 1.141 -0.160 3.884 -7.223 A A 5 6 7.394 B B 12 11 3.414 -0.918 0.115 5.124 AA_DC5DG6:DC11DG12_BB 5 1.911 15.398 -6.905 -36.913 8.738 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2001-04-12 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id refined isotropically RCSB Y RCSB 2001-04-01 REL REL SPM SPERMINE MG MAGNESIUM ION HOH water 2DCG 2DCG from PDB PDB experimental model SPM 21 2 SPM SPM 21 A ION 22 3 MG MG 22 A HOH 103 4 HOH HOH 103 A HOH 107 4 HOH HOH 107 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 112 4 HOH HOH 112 A HOH 113 4 HOH HOH 113 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 119 4 HOH HOH 119 A HOH 120 4 HOH HOH 120 A HOH 122 4 HOH HOH 122 A HOH 125 4 HOH HOH 125 A HOH 127 4 HOH HOH 127 A HOH 132 4 HOH HOH 132 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 136 4 HOH HOH 136 A HOH 137 4 HOH HOH 137 A HOH 138 4 HOH HOH 138 A HOH 139 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 145 4 HOH HOH 145 A HOH 146 4 HOH HOH 146 A HOH 147 4 HOH HOH 147 A HOH 149 4 HOH HOH 149 A HOH 156 4 HOH HOH 156 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 160 4 HOH HOH 160 A HOH 161 4 HOH HOH 161 A HOH 162 4 HOH HOH 162 A HOH 163 4 HOH HOH 163 A HOH 165 4 HOH HOH 165 A HOH 166 4 HOH HOH 166 A HOH 167 4 HOH HOH 167 A HOH 168 4 HOH HOH 168 A HOH 169 4 HOH HOH 169 A HOH 176 4 HOH HOH 176 A HOH 177 4 HOH HOH 177 A HOH 179 4 HOH HOH 179 A HOH 180 4 HOH HOH 180 A HOH 183 4 HOH HOH 183 A ION 22 4 HOH HOH 184 A ION 22 4 HOH HOH 185 A ION 22 4 HOH HOH 186 A ION 22 4 HOH HOH 187 A ION 22 4 HOH HOH 188 A HOH 101 4 HOH HOH 101 B HOH 102 4 HOH HOH 102 B HOH 104 4 HOH HOH 104 B HOH 105 4 HOH HOH 105 B HOH 106 4 HOH HOH 106 B HOH 108 4 HOH HOH 108 B HOH 111 4 HOH HOH 111 B HOH 114 4 HOH HOH 114 B HOH 115 4 HOH HOH 115 B HOH 116 4 HOH HOH 116 B HOH 121 4 HOH HOH 121 B HOH 123 4 HOH HOH 123 B HOH 124 4 HOH HOH 124 B HOH 126 4 HOH HOH 126 B HOH 128 4 HOH HOH 128 B HOH 129 4 HOH HOH 129 B HOH 130 4 HOH HOH 130 B HOH 131 4 HOH HOH 131 B HOH 133 4 HOH HOH 133 B HOH 141 4 HOH HOH 141 B HOH 142 4 HOH HOH 142 B HOH 148 4 HOH HOH 148 B HOH 150 4 HOH HOH 150 B HOH 151 4 HOH HOH 151 B HOH 152 4 HOH HOH 152 B HOH 153 4 HOH HOH 153 B HOH 154 4 HOH HOH 154 B HOH 155 4 HOH HOH 155 B HOH 159 4 HOH HOH 159 B HOH 164 4 HOH HOH 164 B HOH 170 4 HOH HOH 170 B HOH 171 4 HOH HOH 171 B HOH 172 4 HOH HOH 172 B HOH 173 4 HOH HOH 173 B HOH 174 4 HOH HOH 174 B HOH 175 4 HOH HOH 175 B HOH 178 4 HOH HOH 178 B HOH 181 4 HOH HOH 181 B HOH 182 4 HOH HOH 182 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 11 n 1 DC 11 B G 12 n 2 DG 12 B C 13 n 3 DC 13 B G 14 n 4 DG 14 B C 15 n 5 DC 15 B G 16 n 6 DG 16 B author_defined_assembly 2 dimeric A DG 6 A N7 DG 6 1_555 A MG 22 A D MG MG 1_555 A HOH 184 A E O HOH 1_555 176.3 A DG 6 A N7 DG 6 1_555 A MG 22 A D MG MG 1_555 A HOH 185 A E O HOH 1_555 90.7 A HOH 184 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 185 A E O HOH 1_555 89.2 A DG 6 A N7 DG 6 1_555 A MG 22 A D MG MG 1_555 A HOH 186 A E O HOH 1_555 93.4 A HOH 184 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 186 A E O HOH 1_555 86.3 A HOH 185 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 186 A E O HOH 1_555 171.4 A DG 6 A N7 DG 6 1_555 A MG 22 A D MG MG 1_555 A HOH 187 A E O HOH 1_555 93.2 A HOH 184 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 187 A E O HOH 1_555 90.5 A HOH 185 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 187 A E O HOH 1_555 98.9 A HOH 186 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 187 A E O HOH 1_555 88.5 A DG 6 A N7 DG 6 1_555 A MG 22 A D MG MG 1_555 A HOH 188 A E O HOH 1_555 85.0 A HOH 184 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 188 A E O HOH 1_555 91.3 A HOH 185 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 188 A E O HOH 1_555 81.9 A HOH 186 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 188 A E O HOH 1_555 90.9 A HOH 187 A E O HOH 1_555 A MG 22 A D MG MG 1_555 A HOH 188 A E O HOH 1_555 178.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -4.34 0.70 108.00 103.66 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 A A O4' C1' DG DG 4 4 0.073 0.011 1.420 1.493 N 1 A A N7 C8 DG DG 6 6 -0.037 0.006 1.305 1.268 N Anisotropic model for all atoms. The average rms error from the inversion of the lsq matrix is 0.01 Angstrom. 0.0865 0.95 10.0 16102 15782 98.0 1 electron density maps -99.0 -99.0 2DCG model from PDB 2DCG from PDB Parkinson et al. 0.95 10.0 83 347 24 240 0 0.018 0.036 0.052 0.157 0.081 0 0.016 10.0 0 98.0 4.2 0.95 20.0 1ICK 16121 16121 -3.0 -3.0 0.038 0.038 1 58.7 12.0 99.8 0.129 0.95 0.98 9.7 1550 0.129 12.0 98.8 refinement SHELXL-97 data reduction HKL-2000 data scaling HKL-2000 LEFT-HANDED Z-DNA HEXAMER DUPLEX D(CGCGCG)2 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N metalc 2.267 A A DG 6 A N7 DG 6 1_555 A MG 22 D MG MG 1_555 metalc 2.127 A A A MG 22 D MG MG 1_555 A HOH 184 E O HOH 1_555 metalc 2.050 A A A MG 22 D MG MG 1_555 A HOH 185 E O HOH 1_555 metalc 2.075 A A A MG 22 D MG MG 1_555 A HOH 186 E O HOH 1_555 metalc 2.194 A A A MG 22 D MG MG 1_555 A HOH 187 E O HOH 1_555 metalc 2.125 A A A MG 22 D MG MG 1_555 A HOH 188 E O HOH 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 16 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 16 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 16 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 15 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 15 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 15 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 14 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 14 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 14 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 13 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 13 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 13 B N4 DC 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 12 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 12 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 12 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 11 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 11 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 11 B N4 DC 1 1_555 DNA left-handed Z-DNA oligomer, DNA 1ICK PDB 1 1ICK 1 6 1ICK 1 6 1ICK A 1 1 6 11 16 1ICK 11 16 1ICK B 1 1 6 BINDING SITE FOR RESIDUE SPM A 21 A SPM 21 Software 14 BINDING SITE FOR RESIDUE MG A 22 A MG 22 Software 6 A DG 2 A DG 2 14 4_456 A DG 4 A DG 4 14 1_555 A DG 4 A DG 4 14 3_746 A DC 5 A DC 5 14 1_555 A DG 6 A DG 6 14 1_555 A HOH 103 E HOH 14 1_555 A HOH 162 E HOH 14 3_746 A HOH 163 E HOH 14 3_646 B DC 11 B DC 1 14 3_746 B DG 12 B DG 2 14 3_746 B DC 13 B DC 3 14 3_646 B HOH 106 F HOH 14 3_646 B HOH 131 F HOH 14 1_545 B HOH 148 F HOH 14 3_646 A DG 6 A DG 6 6 1_555 A HOH 184 E HOH 6 1_555 A HOH 185 E HOH 6 1_555 A HOH 186 E HOH 6 1_555 A HOH 187 E HOH 6 1_555 A HOH 188 E HOH 6 1_555 19 P 21 21 21