1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bader, R.
Rytz, G.
Lerch, M.
Beck-Sickinger, A.G.
Zerbe, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
41
8031
8042
10.1021/bi0201419
12069594
Key motif to gain selectivity at the neuropeptide Y5-receptor: structure and dynamics of micelle-bound [Ala31, Pro32]-NPY.
2002
10.2210/pdb1icy/pdb
pdb_00001icy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4212.621
NEUROPEPTIDE Y
I31A, T32P
1
man
polymer
NPY
no
yes
YPSKPDNPGEDAPAEDLARYYSALRHYINLAPRQRY(NH2)
YPSKPDNPGEDAPAEDLARYYSALRHYINLAPRQRYX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pig
Sus
Escherichia
Escherichia coli
sample
9823
Sus scrofa
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PUBK19-APNPY-G
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-05-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
wild-type porcine NPY
RCSB
Y
RCSB
2001-04-02
REL
REL
This structure was determined using standard 2D homonuclear techniques
structures with NMR energies less than 3 kcal/mol
100
17
2D NOESY
0
6.0
1
atm
310
K
0
6.0
1
atm
310
K
the structures are based on a total of 622 NOE cross peaks and 16 HNHA couplings indicative of non-averaged backbone conformations
torsion angle dynamics
2 mM 31Ala,32Pro NPY,
300mM DPC, pH=6.0
90%H2O, 10% D2O
90% H2O/10% D2O
2 mM 31Ala,32Pro NPY,
300mM DPC, pH=6.0
99.9%D2O
99.9%D2O
Bruker
processing
XwinNMR
2.1
Bartels et al
data analysis
XEASY
1.53
Guentert et al
structure solution
DYANA
1.5
Lunginbuehl et al.
refinement
OPAL (AMBER)
1.6
600
Bruker
DRX
500
Bruker
DRX
TYR
1
n
1
TYR
1
A
PRO
2
n
2
PRO
2
A
SER
3
n
3
SER
3
A
LYS
4
n
4
LYS
4
A
PRO
5
n
5
PRO
5
A
ASP
6
n
6
ASP
6
A
ASN
7
n
7
ASN
7
A
PRO
8
n
8
PRO
8
A
GLY
9
n
9
GLY
9
A
GLU
10
n
10
GLU
10
A
ASP
11
n
11
ASP
11
A
ALA
12
n
12
ALA
12
A
PRO
13
n
13
PRO
13
A
ALA
14
n
14
ALA
14
A
GLU
15
n
15
GLU
15
A
ASP
16
n
16
ASP
16
A
LEU
17
n
17
LEU
17
A
ALA
18
n
18
ALA
18
A
ARG
19
n
19
ARG
19
A
TYR
20
n
20
TYR
20
A
TYR
21
n
21
TYR
21
A
SER
22
n
22
SER
22
A
ALA
23
n
23
ALA
23
A
LEU
24
n
24
LEU
24
A
ARG
25
n
25
ARG
25
A
HIS
26
n
26
HIS
26
A
TYR
27
n
27
TYR
27
A
ILE
28
n
28
ILE
28
A
ASN
29
n
29
ASN
29
A
LEU
30
n
30
LEU
30
A
ALA
31
n
31
ALA
31
A
PRO
32
n
32
PRO
32
A
ARG
33
n
33
ARG
33
A
GLN
34
n
34
GLN
34
A
ARG
35
n
35
ARG
35
A
TYR
36
n
36
TYR
36
A
NH2
37
n
37
NH2
37
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
TYR
1
0.103
SIDE CHAIN
1
A
TYR
27
0.075
SIDE CHAIN
1
A
TYR
36
0.133
SIDE CHAIN
2
A
TYR
1
0.085
SIDE CHAIN
4
A
TYR
20
0.074
SIDE CHAIN
5
A
TYR
27
0.091
SIDE CHAIN
6
A
TYR
27
0.120
SIDE CHAIN
6
A
TYR
36
0.095
SIDE CHAIN
7
A
TYR
1
0.060
SIDE CHAIN
8
A
TYR
20
0.091
SIDE CHAIN
8
A
TYR
21
0.065
SIDE CHAIN
9
A
TYR
1
0.125
SIDE CHAIN
9
A
TYR
20
0.072
SIDE CHAIN
9
A
TYR
21
0.092
SIDE CHAIN
9
A
TYR
36
0.077
SIDE CHAIN
10
A
TYR
21
0.106
SIDE CHAIN
11
A
TYR
1
0.095
SIDE CHAIN
12
A
TYR
21
0.102
SIDE CHAIN
13
A
TYR
20
0.080
SIDE CHAIN
14
A
TYR
20
0.074
SIDE CHAIN
14
A
TYR
27
0.092
SIDE CHAIN
14
A
TYR
36
0.080
SIDE CHAIN
16
A
TYR
1
0.103
SIDE CHAIN
2
-4.53
0.50
120.30
115.77
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
25
25
25
N
4
-3.38
0.50
120.30
116.92
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
33
33
33
N
1
A
PRO
2
-76.92
-163.16
1
A
SER
3
71.27
-75.60
1
A
LYS
4
163.46
-58.00
1
A
ASP
6
177.67
101.55
1
A
PRO
8
-74.68
-169.43
1
A
ALA
12
-170.50
70.68
1
A
ALA
14
-173.47
56.60
1
A
ARG
33
39.16
75.59
1
A
ARG
35
-86.29
38.61
2
A
GLU
10
61.75
64.79
2
A
ASP
11
-167.17
-57.66
2
A
ALA
12
-172.36
73.53
2
A
ALA
14
-171.53
57.99
2
A
ASP
16
-54.12
-78.74
2
A
LEU
30
-153.05
32.23
2
A
PRO
32
-68.24
78.54
2
A
ARG
33
59.05
-88.99
3
A
ASP
6
77.30
140.86
3
A
PRO
8
-74.44
-160.57
3
A
GLU
10
-177.84
140.08
3
A
ASP
11
60.95
84.29
3
A
ALA
12
58.30
82.51
3
A
LEU
30
-153.96
20.62
3
A
ARG
33
-177.55
87.53
3
A
GLN
34
64.21
66.98
4
A
SER
3
70.66
162.23
4
A
LYS
4
-177.34
85.10
4
A
GLU
10
-171.18
51.74
4
A
ASP
11
172.41
-89.82
4
A
ALA
14
-157.51
61.90
4
A
PRO
32
-69.77
91.89
4
A
ARG
33
42.59
70.79
4
A
GLN
34
45.37
26.95
5
A
SER
3
-47.97
156.82
5
A
LYS
4
176.98
-65.45
5
A
ASP
6
178.53
145.28
5
A
ALA
12
-170.77
67.24
5
A
ALA
14
-173.00
61.23
5
A
GLN
34
-169.55
77.01
6
A
LYS
4
-151.37
73.14
6
A
ASN
7
53.47
82.79
6
A
GLU
10
-171.05
51.91
6
A
ASP
11
55.91
85.98
6
A
ARG
35
-118.23
63.56
7
A
LYS
4
171.99
88.37
7
A
ASN
7
164.15
-56.38
7
A
GLU
10
59.64
72.15
7
A
ASP
11
-175.33
98.10
7
A
ALA
12
37.47
61.85
7
A
ALA
14
-176.52
63.68
7
A
GLU
15
-147.48
23.70
7
A
ASP
16
176.73
-40.49
7
A
LEU
30
-154.96
35.31
7
A
GLN
34
-142.17
54.27
8
A
ASN
7
-35.91
100.06
8
A
GLU
10
59.77
175.12
8
A
ASP
11
78.52
-62.63
8
A
ALA
12
-173.66
75.19
8
A
ALA
14
70.55
48.47
8
A
ASP
16
-64.15
-71.12
8
A
LEU
30
-154.67
47.17
8
A
PRO
32
-71.47
-164.26
9
A
SER
3
-124.53
-53.17
9
A
LYS
4
72.98
94.09
9
A
ASP
6
63.19
108.33
9
A
ALA
12
178.81
91.02
9
A
ARG
35
-103.59
54.88
10
A
ASN
7
-174.19
91.24
10
A
ASP
11
37.86
68.87
10
A
ALA
12
-179.48
-57.48
10
A
ALA
14
-167.85
61.50
10
A
ALA
31
-163.43
85.56
10
A
GLN
34
-172.48
79.01
11
A
ASN
7
160.63
-54.90
11
A
GLU
10
179.54
51.97
11
A
ASP
11
176.64
-50.84
11
A
ALA
12
175.61
72.92
11
A
ALA
14
-173.66
57.41
11
A
ALA
31
-46.21
154.96
11
A
ARG
35
38.92
48.67
12
A
ASP
6
66.05
107.83
12
A
GLU
10
62.85
162.21
12
A
ASP
11
55.10
92.80
12
A
ALA
12
44.58
72.25
12
A
ALA
14
77.22
53.38
12
A
LEU
30
-154.30
33.49
13
A
SER
3
-174.57
141.40
13
A
ASP
6
-168.45
-58.52
13
A
ASN
7
50.11
85.17
13
A
GLU
10
167.82
161.38
13
A
ASP
11
53.21
-179.41
13
A
ALA
12
-55.84
106.16
13
A
ASP
16
-175.27
-44.04
13
A
ARG
19
-64.52
-71.46
13
A
LEU
30
-154.33
39.61
14
A
ASN
7
158.52
-56.56
14
A
ALA
12
-165.78
107.86
14
A
ASP
16
-56.09
-70.32
14
A
ARG
33
58.06
109.18
14
A
GLN
34
-155.00
63.11
15
A
ASP
6
49.40
-174.55
15
A
GLU
10
-176.52
130.65
15
A
ASP
11
57.44
172.34
15
A
ALA
12
-57.06
109.69
15
A
ALA
14
-168.60
59.81
15
A
ARG
19
-69.01
-72.99
15
A
LEU
30
-155.84
40.92
15
A
GLN
34
74.88
78.91
15
A
ARG
35
-112.58
-95.36
16
A
PRO
2
-79.39
-71.23
16
A
LYS
4
173.57
-56.83
16
A
GLU
10
-177.54
69.48
16
A
ASP
11
-179.77
-73.45
16
A
ALA
12
-165.55
66.24
16
A
ALA
14
-164.82
-69.54
16
A
ALA
31
-172.14
-59.72
16
A
GLN
34
-171.23
79.00
17
A
LYS
4
-33.91
97.20
17
A
ASP
6
-174.79
-52.95
17
A
ASN
7
178.15
126.99
17
A
PRO
8
-66.37
-174.25
17
A
ASP
11
76.99
-60.49
17
A
ALA
12
-174.56
84.33
17
A
ALA
14
-178.33
54.32
17
A
ARG
19
-68.79
-78.78
17
A
LEU
30
-156.62
24.90
17
A
ALA
31
-170.94
85.17
17
A
ARG
33
-173.54
96.87
17
A
GLN
34
64.46
70.51
17
A
ARG
35
-114.10
57.50
[ALA31,PRO32]-PNPY BOUND TO DPC MICELLES
1
N
N
A
GLU
15
A
GLU
15
HELX_P
A
ASN
29
A
ASN
29
1
1
15
covale
1.330
both
A
TYR
36
A
C
TYR
36
1_555
A
NH2
37
A
N
NH2
37
1_555
HORMONE/GROWTH FACTOR
Y5 Receptor selective NPY mutant, HORMONE-GROWTH FACTOR COMPLEX
NEUY_PIG
UNP
1
1
P01304
YPSKPDNPGEDAPAEDLARYYSALRHYINLITRQRY
1
36
1ICY
1
36
P01304
A
1
1
36
1
ILE
engineered mutation
ALA
31
1ICY
A
P01304
UNP
31
31
1
THR
engineered mutation
PRO
32
1ICY
A
P01304
UNP
32
32
BINDING SITE FOR RESIDUE NH2 A 37
A
NH2
37
Software
1
A
TYR
36
A
TYR
36
1
1_555