0.015974 0.000000 0.000000 0.000000 0.015974 0.000000 0.000000 0.000000 0.008636 0.00000 0.00000 0.00000 Tong, L. Anderson, P.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 62.600 62.600 115.800 C41 H52 N6 O4 S 724.954 N-[(1R)-1-{[(1S,2S)-1-benzyl-3-{(2R,4S)-2-(tert-butylcarbamoyl)-4-[(pyridin-3-ylmethyl)sulfanyl]piperidin-1-yl}-2-hydroxypropyl]carbamoyl}-2-methylpropyl]quinoline-2-carboxamide peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O Y 3 N N Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C N 13 N N N 14 S C N 15 N C N 16 N O N 17 N C N 18 N C N 19 N C N 20 N N N 21 S C N 22 R C N 23 N O N 24 N C Y 25 N C Y 26 N C Y 27 N C Y 28 N C Y 29 N C Y 30 N C N 31 N C N 32 N N N 33 S C N 34 N C N 35 R C N 36 N C N 37 N C N 38 N C N 39 N O Y 40 N N Y 41 N C Y 42 N C Y 43 N C Y 44 N C Y 45 N C N 46 N C N 47 N S N 48 N N N 49 N C N 50 N C N 51 N C N 52 N C N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 S C N 107 N C N 108 N O N 109 N C N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N N N 126 N C N 127 N N N 128 N N N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 S C N 147 N C N 148 N O N 149 N C N 150 N C N 151 N O N 152 N N N 153 N O N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 N C N 167 N C N 168 N O N 169 N O N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N N N 179 S C N 180 N C N 181 N O N 182 N C N 183 N C N 184 N C N 185 N O N 186 N N N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N O N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 N C N 219 N C N 220 N O N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N O N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 S C N 235 N C N 236 N C N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C N 257 N C N 258 N C N 259 N C N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N C N 282 N N N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C N 304 N C N 305 N S N 306 N C N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N C N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 R C N 378 N O N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N N Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C N 428 N O N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N N N 442 S C N 443 N C N 444 N O N 445 N C N 446 N C N 447 N C N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H Y 1 N doub Y 2 N sing Y 3 N sing N 4 N sing Y 5 N doub N 6 N sing Y 7 N sing N 8 N sing Y 9 N doub Y 10 N sing N 11 N sing Y 12 N sing N 13 N sing Y 14 N doub N 15 N sing Y 16 N sing N 17 N sing Y 18 N doub N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing Y 47 N doub Y 48 N sing Y 49 N sing N 50 N sing Y 51 N doub N 52 N sing Y 53 N doub N 54 N sing Y 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing Y 91 N doub Y 92 N sing Y 93 N sing N 94 N sing Y 95 N doub N 96 N sing Y 97 N sing N 98 N sing Y 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing Y 322 N doub Y 323 N sing Y 324 N sing N 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing Y 419 N doub Y 420 N sing Y 421 N sing N 422 N sing Y 423 N doub N 424 N sing Y 425 N doub N 426 N sing Y 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing UK Structure STRUE6 2005 0969-2126 3 33 40 10.1016/S0969-2126(01)00133-2 7743130 Crystal structures of HIV-2 protease in complex with inhibitors containing the hydroxyethylamine dipeptide isostere. 1995 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 90 8387 Crystal Structure of Human Immunodeficiency Virus (HIV) Type 2 Protease in Complex with a Reduced Amide Inhibitor and Comparison with HIV-1 Protease Structures 1993 10.2210/pdb1ida/pdb pdb_00001ida 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 10728.337 Protease 3.4.23.47 rsidues 514-622 2 man polymer 724.954 N-[(1R)-1-{[(1S,2S)-1-benzyl-3-{(2R,4S)-2-(tert-butylcarbamoyl)-4-[(pyridin-3-ylmethyl)sulfanyl]piperidin-1-yl}-2-hydroxypropyl]carbamoyl}-2-methylpropyl]quinoline-2-carboxamide 1 syn non-polymer 18.015 water 113 nat water Retropepsin, PR no no PQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDT PINIFGRNILTALGMSLNL PQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDT PINIFGRNILTALGMSLNL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HIV-2 Lentivirus Escherichia sample gag-pol 11709 Human immunodeficiency virus type 2 562 Escherichia coli 2.64 53.45 pdbx_database_status software software chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Source and taxonomy Structure summary Version format compliance Other Data collection Other Refinement description Data collection Refinement description Data collection Database references Derived calculations 1 0 1995-01-26 1 1 2008-05-22 1 2 2011-07-13 1 3 2012-12-12 1 4 2019-07-17 1 5 2019-08-14 1 6 2024-02-07 _pdbx_database_status.process_site _software.classification _software.classification _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1994-10-19 REL 0PO N-[(1R)-1-{[(1S,2S)-1-benzyl-3-{(2R,4S)-2-(tert-butylcarbamoyl)-4-[(pyridin-3-ylmethyl)sulfanyl]piperidin-1-yl}-2-hydroxypropyl]carbamoyl}-2-methylpropyl]quinoline-2-carboxamide HOH water Inhibitor N-[(1R)-1-{[(1S,2S)-1-benzyl-3-{(2R,4S)-2-(tert-butylcarbamoyl)-4-[(pyridin-3-ylmethyl)sulfanyl]piperidin-1-yl}- 2-hydroxypropyl]carbamoyl}-2-methylpropyl]quinoline-2-carboxamide Peptide-like QND 1 2 0PO 0PO 100 B HOH 302 3 HOH HOH 302 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 313 3 HOH HOH 313 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 321 3 HOH HOH 321 A HOH 323 3 HOH HOH 323 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 339 3 HOH HOH 339 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 356 3 HOH HOH 356 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 363 3 HOH HOH 363 A HOH 365 3 HOH HOH 365 A HOH 366 3 HOH HOH 366 A HOH 367 3 HOH HOH 367 A HOH 371 3 HOH HOH 371 A HOH 374 3 HOH HOH 374 A HOH 375 3 HOH HOH 375 A HOH 376 3 HOH HOH 376 A HOH 379 3 HOH HOH 379 A HOH 381 3 HOH HOH 381 A HOH 384 3 HOH HOH 384 A HOH 385 3 HOH HOH 385 A HOH 387 3 HOH HOH 387 A HOH 390 3 HOH HOH 390 A HOH 394 3 HOH HOH 394 A HOH 395 3 HOH HOH 395 A HOH 398 3 HOH HOH 398 A HOH 401 3 HOH HOH 401 A HOH 408 3 HOH HOH 408 A HOH 410 3 HOH HOH 410 A HOH 412 3 HOH HOH 412 A HOH 415 3 HOH HOH 415 A HOH 301 3 HOH HOH 301 B HOH 303 3 HOH HOH 303 B HOH 304 3 HOH HOH 304 B HOH 305 3 HOH HOH 305 B HOH 306 3 HOH HOH 306 B HOH 307 3 HOH HOH 307 B HOH 311 3 HOH HOH 311 B HOH 312 3 HOH HOH 312 B HOH 314 3 HOH HOH 314 B HOH 315 3 HOH HOH 315 B HOH 318 3 HOH HOH 318 B HOH 319 3 HOH HOH 319 B HOH 320 3 HOH HOH 320 B HOH 322 3 HOH HOH 322 B HOH 324 3 HOH HOH 324 B HOH 325 3 HOH HOH 325 B HOH 328 3 HOH HOH 328 B HOH 329 3 HOH HOH 329 B HOH 330 3 HOH HOH 330 B HOH 334 3 HOH HOH 334 B HOH 337 3 HOH HOH 337 B HOH 338 3 HOH HOH 338 B HOH 340 3 HOH HOH 340 B HOH 341 3 HOH HOH 341 B HOH 344 3 HOH HOH 344 B HOH 345 3 HOH HOH 345 B HOH 349 3 HOH HOH 349 B HOH 350 3 HOH HOH 350 B HOH 351 3 HOH HOH 351 B HOH 352 3 HOH HOH 352 B HOH 353 3 HOH HOH 353 B HOH 354 3 HOH HOH 354 B HOH 355 3 HOH HOH 355 B HOH 357 3 HOH HOH 357 B HOH 361 3 HOH HOH 361 B HOH 362 3 HOH HOH 362 B HOH 364 3 HOH HOH 364 B HOH 368 3 HOH HOH 368 B HOH 369 3 HOH HOH 369 B HOH 370 3 HOH HOH 370 B HOH 372 3 HOH HOH 372 B HOH 373 3 HOH HOH 373 B HOH 377 3 HOH HOH 377 B HOH 378 3 HOH HOH 378 B HOH 380 3 HOH HOH 380 B HOH 382 3 HOH HOH 382 B HOH 383 3 HOH HOH 383 B HOH 386 3 HOH HOH 386 B HOH 388 3 HOH HOH 388 B HOH 389 3 HOH HOH 389 B HOH 391 3 HOH HOH 391 B HOH 392 3 HOH HOH 392 B HOH 393 3 HOH HOH 393 B HOH 396 3 HOH HOH 396 B HOH 399 3 HOH HOH 399 B HOH 402 3 HOH HOH 402 B HOH 403 3 HOH HOH 403 B HOH 404 3 HOH HOH 404 B HOH 405 3 HOH HOH 405 B HOH 406 3 HOH HOH 406 B HOH 407 3 HOH HOH 407 B HOH 409 3 HOH HOH 409 B HOH 411 3 HOH HOH 411 B HOH 413 3 HOH HOH 413 B HOH 414 3 HOH HOH 414 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A PHE 3 n 3 PHE 3 A SER 4 n 4 SER 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A VAL 10 n 10 VAL 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ALA 13 n 13 ALA 13 A TYR 14 n 14 TYR 14 A ILE 15 n 15 ILE 15 A GLU 16 n 16 GLU 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A PRO 19 n 19 PRO 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A VAL 22 n 22 VAL 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A SER 31 n 31 SER 31 A ILE 32 n 32 ILE 32 A VAL 33 n 33 VAL 33 A ALA 34 n 34 ALA 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A GLU 37 n 37 GLU 37 A LEU 38 n 38 LEU 38 A GLY 39 n 39 GLY 39 A ASN 40 n 40 ASN 40 A ASN 41 n 41 ASN 41 A TYR 42 n 42 TYR 42 A SER 43 n 43 SER 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A ILE 46 n 46 ILE 46 A VAL 47 n 47 VAL 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A ASN 55 n 55 ASN 55 A THR 56 n 56 THR 56 A LYS 57 n 57 LYS 57 A GLU 58 n 58 GLU 58 A TYR 59 n 59 TYR 59 A LYS 60 n 60 LYS 60 A ASN 61 n 61 ASN 61 A VAL 62 n 62 VAL 62 A GLU 63 n 63 GLU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A VAL 66 n 66 VAL 66 A LEU 67 n 67 LEU 67 A ASN 68 n 68 ASN 68 A LYS 69 n 69 LYS 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A ARG 72 n 72 ARG 72 A ALA 73 n 73 ALA 73 A THR 74 n 74 THR 74 A ILE 75 n 75 ILE 75 A MET 76 n 76 MET 76 A THR 77 n 77 THR 77 A GLY 78 n 78 GLY 78 A ASP 79 n 79 ASP 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A ILE 82 n 82 ILE 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A PHE 85 n 85 PHE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A ILE 89 n 89 ILE 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A ALA 92 n 92 ALA 92 A LEU 93 n 93 LEU 93 A GLY 94 n 94 GLY 94 A MET 95 n 95 MET 95 A SER 96 n 96 SER 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A LEU 99 n 99 LEU 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B PHE 3 n 3 PHE 3 B SER 4 n 4 SER 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B VAL 10 n 10 VAL 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ALA 13 n 13 ALA 13 B TYR 14 n 14 TYR 14 B ILE 15 n 15 ILE 15 B GLU 16 n 16 GLU 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B PRO 19 n 19 PRO 19 B VAL 20 n 20 VAL 20 B GLU 21 n 21 GLU 21 B VAL 22 n 22 VAL 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B SER 31 n 31 SER 31 B ILE 32 n 32 ILE 32 B VAL 33 n 33 VAL 33 B ALA 34 n 34 ALA 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B GLU 37 n 37 GLU 37 B LEU 38 n 38 LEU 38 B GLY 39 n 39 GLY 39 B ASN 40 n 40 ASN 40 B ASN 41 n 41 ASN 41 B TYR 42 n 42 TYR 42 B SER 43 n 43 SER 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B ILE 46 n 46 ILE 46 B VAL 47 n 47 VAL 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B ASN 55 n 55 ASN 55 B THR 56 n 56 THR 56 B LYS 57 n 57 LYS 57 B GLU 58 n 58 GLU 58 B TYR 59 n 59 TYR 59 B LYS 60 n 60 LYS 60 B ASN 61 n 61 ASN 61 B VAL 62 n 62 VAL 62 B GLU 63 n 63 GLU 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B VAL 66 n 66 VAL 66 B LEU 67 n 67 LEU 67 B ASN 68 n 68 ASN 68 B LYS 69 n 69 LYS 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B ARG 72 n 72 ARG 72 B ALA 73 n 73 ALA 73 B THR 74 n 74 THR 74 B ILE 75 n 75 ILE 75 B MET 76 n 76 MET 76 B THR 77 n 77 THR 77 B GLY 78 n 78 GLY 78 B ASP 79 n 79 ASP 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B ILE 82 n 82 ILE 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B PHE 85 n 85 PHE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B ILE 89 n 89 ILE 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B ALA 92 n 92 ALA 92 B LEU 93 n 93 LEU 93 B GLY 94 n 94 GLY 94 B MET 95 n 95 MET 95 B SER 96 n 96 SER 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B LEU 99 n 99 LEU 99 B author_and_software_defined_assembly PISA 2 dimeric 5480 -15 9200 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 3 A N PHE 3 B O LEU 97 B O LEU 97 B N ASN 98 B N ASN 98 A O SER 96 A O SER 96 A O LEU 97 A O LEU 97 B N PHE 3 B N PHE 3 1 8.62 0.50 120.30 128.92 A A A NE CZ NH1 ARG ARG ARG 8 8 8 N 1 -9.41 0.50 120.30 110.89 A A A NE CZ NH2 ARG ARG ARG 8 8 8 N 1 -6.46 0.90 118.30 111.84 A A A CB CG OD1 ASP ASP ASP 25 25 25 N 1 7.29 0.90 118.30 125.59 A A A CB CG OD2 ASP ASP ASP 25 25 25 N 1 7.52 0.90 118.30 125.82 A A A CB CG OD1 ASP ASP ASP 29 29 29 N 1 -9.74 0.90 118.30 108.56 A A A CB CG OD2 ASP ASP ASP 29 29 29 N 1 9.86 1.50 110.50 120.36 A A A N CA CB SER SER SER 43 43 43 N 1 11.05 1.80 110.60 121.65 A A A N CA CB ASP ASP ASP 79 79 79 N 1 -5.82 0.90 118.30 112.48 A A A CB CG OD1 ASP ASP ASP 79 79 79 N 1 5.76 0.90 118.30 124.06 B B B CB CG OD1 ASP ASP ASP 25 25 25 N 1 -7.16 0.90 118.30 111.14 B B B CB CG OD2 ASP ASP ASP 25 25 25 N 1 12.60 2.00 110.90 123.50 B B B CA CB CG2 ILE ILE ILE 46 46 46 N 1 9.99 1.60 110.90 120.89 B B B CG1 CB CG2 VAL VAL VAL 71 71 71 N 1 -5.71 0.90 118.30 112.59 B B B CB CG OD1 ASP ASP ASP 79 79 79 N 1 5.73 0.90 118.30 124.03 B B B CB CG OD2 ASP ASP ASP 79 79 79 N 1 A A CD OE2 GLU GLU 16 16 0.068 0.011 1.252 1.320 N 1 A A CD OE2 GLU GLU 21 21 0.085 0.011 1.252 1.337 N 1 A A CD OE2 GLU GLU 37 37 0.090 0.011 1.252 1.342 N 1 A A CD OE1 GLU GLU 63 63 0.085 0.011 1.252 1.337 N 1 A A CD OE1 GLU GLU 65 65 0.086 0.011 1.252 1.338 N 1 B B CD OE1 GLU GLU 16 16 0.088 0.011 1.252 1.340 N 1 B B CD OE2 GLU GLU 21 21 0.083 0.011 1.252 1.335 N 1 B B CD OE1 GLU GLU 37 37 0.077 0.011 1.252 1.329 N 1 B B CD OE2 GLU GLU 58 58 0.072 0.011 1.252 1.324 N 0.1960000 0.1960000 1.7 6.0 22017 1 2.0 1.7 6.0 113 1675 52 0 1510 0.017 2.6 model building X-PLOR refinement TNT refinement X-PLOR phasing X-PLOR CRYSTAL STRUCTURES OF HIV-2 PROTEASE IN COMPLEX WITH INHIBITORS CONTAINING THE HYDROXYETHYLAMINE DIPEPTIDE ISOSTERE 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A GLY 94 A GLY 94 1 1 9 B GLY 86 B GLY 86 HELX_P B GLY 94 B GLY 94 1 2 9 HYDROLASE/HYDROLASE INHIBITOR ACID PROTEINASE, AIDS, Protease, HYDROLASE-HYDROLASE INHIBITOR complex POL_HV2RO UNP 1 514 P04584 PQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDT PINIFGRNILTALGMSLNL 514 612 1IDA 1 99 P04584 A 1 1 99 514 612 1IDA 1 99 P04584 B 1 1 99 4 anti-parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A SER 4 A SER 4 B SER 96 B SER 96 B ASN 98 B ASN 98 A SER 96 A SER 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B PHE 3 B PHE 3 BINDING SITE FOR RESIDUE 0PO B 100 B 0PO 100 Software 17 A ARG 8 A ARG 8 17 1_555 A ASP 25 A ASP 25 17 1_555 A ASP 30 A ASP 30 17 1_555 A GLY 48 A GLY 48 17 1_555 A GLY 49 A GLY 49 17 1_555 A PRO 81 A PRO 81 17 1_555 B ASP 25 B ASP 25 17 1_555 B GLY 27 B GLY 27 17 1_555 B ALA 28 B ALA 28 17 1_555 B ASP 29 B ASP 29 17 1_555 B GLY 48 B GLY 48 17 1_555 B ILE 50 B ILE 50 17 1_555 B PRO 81 B PRO 81 17 1_555 B ILE 82 B ILE 82 17 1_555 B ILE 84 B ILE 84 17 1_555 B HOH 301 E HOH 17 1_555 B HOH 311 E HOH 17 1_555 96 P 43 21 2