0.022252 0.000000 0.000000 0.000000 0.019448 0.000000 0.000000 0.000000 0.007546 0.00000 0.00000 0.00000 Tocchini-Valentini, G. Rochel, N. Wurtz, J.M. Mitschler, A. Moras, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.0 90.0 90.0 44.94 51.42 132.52 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C27 H44 O3 416.636 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL 1,25 DIHYDROXY VITAMIN D3 non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N O N 392 N O N 393 S C N 394 N C N 395 R C N 396 N C N 397 N C N 398 N C N 399 N C N 400 N C N 401 N C N 402 N C N 403 N C N 404 N C N 405 R C N 406 S C N 407 N C N 408 N C N 409 R C N 410 N C N 411 N C N 412 R C N 413 N C N 414 N C N 415 N C N 416 N C N 417 N C N 418 N C N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 Z doub N 393 N sing N 394 N sing N 395 N sing N 396 E doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 98 5491 5496 10.1073/pnas.091018698 11344298 Crystal structures of the vitamin D receptor complexed to superagonist 20-epi ligands. 2001 10.2210/pdb1ie9/pdb pdb_00001ie9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.0 BW7B EMBL/DESY, HAMBURG SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 29391.871 VITAMIN D3 RECEPTOR 1 man polymer 416.636 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL 1 syn non-polymer 18.015 water 225 nat water 1,25-DIHYDROXYVITAMIN D3 RECEPTOR no no DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMI PGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEE EHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQP ECSMKLTPLVLEVFGNEIS DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMI PGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEE EHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQP ECSMKLTPLVLEVFGNEIS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 1 47 9606 Homo sapiens 562 Escherichia coli human Homo Escherichia sample 48 259 9606 Homo sapiens 562 Escherichia coli 1 2.60 52.75 VAPOR DIFFUSION, HANGING DROP 6.0 Ammonium Sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 entity_src_gen software chem_comp_atom chem_comp_bond database_2 diffrn_source struct_site repository Initial release Version format compliance Version format compliance Refinement description Source and taxonomy Data collection Database references Derived calculations 1 0 2001-05-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-08-16 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal Structure Of The Nuclear Receptor For Vitamin D Complexed To Vitamin D Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to KH1060 RCSB Y RCSB 2001-04-09 REL REL VDX 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL HOH water MC 500 2 VDX VDX 500 A TIP 1 3 HOH HOH 501 A TIP 2 3 HOH HOH 502 A TIP 3 3 HOH HOH 503 A TIP 4 3 HOH HOH 504 A TIP 5 3 HOH HOH 505 A TIP 6 3 HOH HOH 506 A TIP 7 3 HOH HOH 507 A TIP 8 3 HOH HOH 508 A TIP 9 3 HOH HOH 509 A TIP 10 3 HOH HOH 510 A TIP 11 3 HOH HOH 511 A TIP 12 3 HOH HOH 512 A TIP 13 3 HOH HOH 513 A TIP 14 3 HOH HOH 514 A TIP 15 3 HOH HOH 515 A TIP 16 3 HOH HOH 516 A TIP 17 3 HOH HOH 517 A TIP 18 3 HOH HOH 518 A TIP 19 3 HOH HOH 519 A TIP 20 3 HOH HOH 520 A TIP 21 3 HOH HOH 521 A TIP 22 3 HOH HOH 522 A TIP 23 3 HOH HOH 523 A TIP 24 3 HOH HOH 524 A TIP 25 3 HOH HOH 525 A TIP 26 3 HOH HOH 526 A TIP 27 3 HOH HOH 527 A TIP 28 3 HOH HOH 528 A TIP 29 3 HOH HOH 529 A TIP 30 3 HOH HOH 530 A TIP 31 3 HOH HOH 531 A TIP 32 3 HOH HOH 532 A TIP 33 3 HOH HOH 533 A TIP 34 3 HOH HOH 534 A TIP 35 3 HOH HOH 535 A TIP 36 3 HOH HOH 536 A TIP 37 3 HOH HOH 537 A TIP 38 3 HOH HOH 538 A TIP 39 3 HOH HOH 539 A TIP 40 3 HOH HOH 540 A TIP 41 3 HOH HOH 541 A TIP 42 3 HOH HOH 542 A TIP 43 3 HOH HOH 543 A TIP 44 3 HOH HOH 544 A TIP 45 3 HOH HOH 545 A TIP 46 3 HOH HOH 546 A TIP 47 3 HOH HOH 547 A TIP 48 3 HOH HOH 548 A TIP 49 3 HOH HOH 549 A TIP 50 3 HOH HOH 550 A TIP 51 3 HOH HOH 551 A TIP 52 3 HOH HOH 552 A TIP 53 3 HOH HOH 553 A TIP 54 3 HOH HOH 554 A TIP 55 3 HOH HOH 555 A TIP 56 3 HOH HOH 556 A TIP 57 3 HOH HOH 557 A TIP 58 3 HOH HOH 558 A TIP 59 3 HOH HOH 559 A TIP 60 3 HOH HOH 560 A TIP 61 3 HOH HOH 561 A TIP 62 3 HOH HOH 562 A TIP 63 3 HOH HOH 563 A TIP 64 3 HOH HOH 564 A TIP 65 3 HOH HOH 565 A TIP 66 3 HOH HOH 566 A TIP 67 3 HOH HOH 567 A TIP 68 3 HOH HOH 568 A TIP 69 3 HOH HOH 569 A TIP 70 3 HOH HOH 570 A TIP 71 3 HOH HOH 571 A TIP 72 3 HOH HOH 572 A TIP 73 3 HOH HOH 573 A TIP 74 3 HOH HOH 574 A TIP 75 3 HOH HOH 575 A TIP 76 3 HOH HOH 576 A TIP 77 3 HOH HOH 577 A TIP 78 3 HOH HOH 578 A TIP 79 3 HOH HOH 579 A TIP 80 3 HOH HOH 580 A TIP 81 3 HOH HOH 581 A TIP 82 3 HOH HOH 582 A TIP 83 3 HOH HOH 583 A TIP 84 3 HOH HOH 584 A TIP 85 3 HOH HOH 585 A TIP 86 3 HOH HOH 586 A TIP 87 3 HOH HOH 587 A TIP 88 3 HOH HOH 588 A TIP 89 3 HOH HOH 589 A TIP 90 3 HOH HOH 590 A TIP 91 3 HOH HOH 591 A TIP 92 3 HOH HOH 592 A TIP 93 3 HOH HOH 593 A TIP 94 3 HOH HOH 594 A TIP 95 3 HOH HOH 595 A TIP 96 3 HOH HOH 596 A TIP 97 3 HOH HOH 597 A TIP 98 3 HOH HOH 598 A TIP 99 3 HOH HOH 599 A TIP 100 3 HOH HOH 600 A TIP 101 3 HOH HOH 601 A TIP 102 3 HOH HOH 602 A TIP 103 3 HOH HOH 603 A TIP 104 3 HOH HOH 604 A TIP 105 3 HOH HOH 605 A TIP 106 3 HOH HOH 606 A TIP 107 3 HOH HOH 607 A TIP 108 3 HOH HOH 608 A TIP 109 3 HOH HOH 609 A TIP 110 3 HOH HOH 610 A TIP 111 3 HOH HOH 611 A TIP 112 3 HOH HOH 612 A TIP 113 3 HOH HOH 613 A TIP 114 3 HOH HOH 614 A TIP 115 3 HOH HOH 615 A TIP 116 3 HOH HOH 616 A TIP 117 3 HOH HOH 617 A TIP 118 3 HOH HOH 618 A TIP 119 3 HOH HOH 619 A TIP 120 3 HOH HOH 620 A TIP 121 3 HOH HOH 621 A TIP 122 3 HOH HOH 622 A TIP 123 3 HOH HOH 623 A TIP 124 3 HOH HOH 624 A TIP 125 3 HOH HOH 625 A TIP 126 3 HOH HOH 626 A TIP 127 3 HOH HOH 627 A TIP 128 3 HOH HOH 628 A TIP 129 3 HOH HOH 629 A TIP 130 3 HOH HOH 630 A TIP 131 3 HOH HOH 631 A TIP 132 3 HOH HOH 632 A TIP 133 3 HOH HOH 633 A TIP 134 3 HOH HOH 634 A TIP 135 3 HOH HOH 635 A TIP 136 3 HOH HOH 636 A TIP 137 3 HOH HOH 637 A TIP 138 3 HOH HOH 638 A TIP 139 3 HOH HOH 639 A TIP 140 3 HOH HOH 640 A TIP 141 3 HOH HOH 641 A TIP 142 3 HOH HOH 642 A TIP 143 3 HOH HOH 643 A TIP 144 3 HOH HOH 644 A TIP 145 3 HOH HOH 645 A TIP 146 3 HOH HOH 646 A TIP 147 3 HOH HOH 647 A TIP 148 3 HOH HOH 648 A TIP 149 3 HOH HOH 649 A TIP 150 3 HOH HOH 650 A TIP 151 3 HOH HOH 651 A TIP 152 3 HOH HOH 652 A TIP 153 3 HOH HOH 653 A TIP 154 3 HOH HOH 654 A TIP 155 3 HOH HOH 655 A TIP 156 3 HOH HOH 656 A TIP 157 3 HOH HOH 657 A TIP 158 3 HOH HOH 658 A TIP 159 3 HOH HOH 659 A TIP 160 3 HOH HOH 660 A TIP 161 3 HOH HOH 661 A TIP 162 3 HOH HOH 662 A TIP 163 3 HOH HOH 663 A TIP 164 3 HOH HOH 664 A TIP 165 3 HOH HOH 665 A TIP 166 3 HOH HOH 666 A TIP 167 3 HOH HOH 667 A TIP 168 3 HOH HOH 668 A TIP 169 3 HOH HOH 669 A TIP 170 3 HOH HOH 670 A TIP 171 3 HOH HOH 671 A TIP 172 3 HOH HOH 672 A TIP 173 3 HOH HOH 673 A TIP 174 3 HOH HOH 674 A TIP 175 3 HOH HOH 675 A TIP 176 3 HOH HOH 676 A TIP 177 3 HOH HOH 677 A TIP 178 3 HOH HOH 678 A TIP 179 3 HOH HOH 679 A TIP 180 3 HOH HOH 680 A TIP 181 3 HOH HOH 681 A TIP 182 3 HOH HOH 682 A TIP 183 3 HOH HOH 683 A TIP 184 3 HOH HOH 684 A TIP 185 3 HOH HOH 685 A TIP 186 3 HOH HOH 686 A TIP 187 3 HOH HOH 687 A TIP 188 3 HOH HOH 688 A TIP 189 3 HOH HOH 689 A TIP 190 3 HOH HOH 690 A TIP 191 3 HOH HOH 691 A TIP 192 3 HOH HOH 692 A TIP 193 3 HOH HOH 693 A TIP 194 3 HOH HOH 694 A TIP 195 3 HOH HOH 695 A TIP 196 3 HOH HOH 696 A TIP 197 3 HOH HOH 697 A TIP 198 3 HOH HOH 698 A TIP 199 3 HOH HOH 699 A TIP 200 3 HOH HOH 700 A TIP 201 3 HOH HOH 701 A TIP 202 3 HOH HOH 702 A TIP 203 3 HOH HOH 703 A TIP 204 3 HOH HOH 704 A TIP 205 3 HOH HOH 705 A TIP 206 3 HOH HOH 706 A TIP 207 3 HOH HOH 707 A TIP 208 3 HOH HOH 708 A TIP 209 3 HOH HOH 709 A TIP 210 3 HOH HOH 710 A TIP 211 3 HOH HOH 711 A TIP 212 3 HOH HOH 712 A TIP 213 3 HOH HOH 713 A TIP 214 3 HOH HOH 714 A TIP 215 3 HOH HOH 715 A TIP 216 3 HOH HOH 716 A TIP 217 3 HOH HOH 717 A TIP 218 3 HOH HOH 718 A TIP 219 3 HOH HOH 719 A TIP 220 3 HOH HOH 720 A TIP 221 3 HOH HOH 721 A TIP 222 3 HOH HOH 722 A TIP 223 3 HOH HOH 723 A TIP 224 3 HOH HOH 724 A TIP 225 3 HOH HOH 725 A GLU 118 n 1 ASP 118 A SER 119 n 2 SER 119 A LEU 120 n 3 LEU 120 A ARG 121 n 4 ARG 121 A PRO 122 n 5 PRO 122 A LYS 123 n 6 LYS 123 A LEU 124 n 7 LEU 124 A SER 125 n 8 SER 125 A GLU 126 n 9 GLU 126 A GLU 127 n 10 GLU 127 A GLN 128 n 11 GLN 128 A GLN 129 n 12 GLN 129 A ARG 130 n 13 ARG 130 A ILE 131 n 14 ILE 131 A ILE 132 n 15 ILE 132 A ALA 133 n 16 ALA 133 A ILE 134 n 17 ILE 134 A LEU 135 n 18 LEU 135 A LEU 136 n 19 LEU 136 A ASP 137 n 20 ASP 137 A ALA 138 n 21 ALA 138 A HIS 139 n 22 HIS 139 A HIS 140 n 23 HIS 140 A LYS 141 n 24 LYS 141 A THR 142 n 25 THR 142 A TYR 143 n 26 TYR 143 A ASP 144 n 27 ASP 144 A PRO 145 n 28 PRO 145 A THR 146 n 29 THR 146 A TYR 147 n 30 TYR 147 A SER 148 n 31 SER 148 A ASP 149 n 32 ASP 149 A PHE 150 n 33 PHE 150 A CYS 151 n 34 CYS 151 A GLN 152 n 35 GLN 152 A PHE 153 n 36 PHE 153 A ARG 154 n 37 ARG 154 A PRO 155 n 38 PRO 155 A PRO 156 n 39 PRO 156 A VAL 157 n 40 VAL 157 A ARG 158 n 41 ARG 158 A VAL 159 n 42 VAL 159 A ASN 160 n 43 ASN 160 A ASP 161 n 44 ASP 161 A GLY 162 n 45 GLY 162 A GLY 163 n 46 GLY 163 A GLY 164 n 47 GLY 164 A SER 216 n 48 SER 216 A VAL 217 n 49 VAL 217 A THR 218 n 50 THR 218 A LEU 219 n 51 LEU 219 A GLU 220 n 52 GLU 220 A LEU 221 n 53 LEU 221 A SER 222 n 54 SER 222 A GLN 223 n 55 GLN 223 A LEU 224 n 56 LEU 224 A SER 225 n 57 SER 225 A MET 226 n 58 MET 226 A LEU 227 n 59 LEU 227 A PRO 228 n 60 PRO 228 A HIS 229 n 61 HIS 229 A LEU 230 n 62 LEU 230 A ALA 231 n 63 ALA 231 A ASP 232 n 64 ASP 232 A LEU 233 n 65 LEU 233 A VAL 234 n 66 VAL 234 A SER 235 n 67 SER 235 A TYR 236 n 68 TYR 236 A SER 237 n 69 SER 237 A ILE 238 n 70 ILE 238 A GLN 239 n 71 GLN 239 A LYS 240 n 72 LYS 240 A VAL 241 n 73 VAL 241 A ILE 242 n 74 ILE 242 A GLY 243 n 75 GLY 243 A PHE 244 n 76 PHE 244 A ALA 245 n 77 ALA 245 A LYS 246 n 78 LYS 246 A MET 247 n 79 MET 247 A ILE 248 n 80 ILE 248 A PRO 249 n 81 PRO 249 A GLY 250 n 82 GLY 250 A PHE 251 n 83 PHE 251 A ARG 252 n 84 ARG 252 A ASP 253 n 85 ASP 253 A LEU 254 n 86 LEU 254 A THR 255 n 87 THR 255 A SER 256 n 88 SER 256 A GLU 257 n 89 GLU 257 A ASP 258 n 90 ASP 258 A GLN 259 n 91 GLN 259 A ILE 260 n 92 ILE 260 A VAL 261 n 93 VAL 261 A LEU 262 n 94 LEU 262 A LEU 263 n 95 LEU 263 A LYS 264 n 96 LYS 264 A SER 265 n 97 SER 265 A SER 266 n 98 SER 266 A ALA 267 n 99 ALA 267 A ILE 268 n 100 ILE 268 A GLU 269 n 101 GLU 269 A VAL 270 n 102 VAL 270 A ILE 271 n 103 ILE 271 A MET 272 n 104 MET 272 A LEU 273 n 105 LEU 273 A ARG 274 n 106 ARG 274 A SER 275 n 107 SER 275 A ASN 276 n 108 ASN 276 A GLU 277 n 109 GLU 277 A SER 278 n 110 SER 278 A PHE 279 n 111 PHE 279 A THR 280 n 112 THR 280 A MET 281 n 113 MET 281 A ASP 282 n 114 ASP 282 A ASP 283 n 115 ASP 283 A MET 284 n 116 MET 284 A SER 285 n 117 SER 285 A TRP 286 n 118 TRP 286 A THR 287 n 119 THR 287 A CYS 288 n 120 CYS 288 A GLY 289 n 121 GLY 289 A ASN 290 n 122 ASN 290 A GLN 291 n 123 GLN 291 A ASP 292 n 124 ASP 292 A TYR 293 n 125 TYR 293 A LYS 294 n 126 LYS 294 A TYR 295 n 127 TYR 295 A ARG 296 n 128 ARG 296 A VAL 297 n 129 VAL 297 A SER 298 n 130 SER 298 A ASP 299 n 131 ASP 299 A VAL 300 n 132 VAL 300 A THR 301 n 133 THR 301 A LYS 302 n 134 LYS 302 A ALA 303 n 135 ALA 303 A GLY 304 n 136 GLY 304 A HIS 305 n 137 HIS 305 A SER 306 n 138 SER 306 A LEU 307 n 139 LEU 307 A GLU 308 n 140 GLU 308 A LEU 309 n 141 LEU 309 A ILE 310 n 142 ILE 310 A GLU 311 n 143 GLU 311 A PRO 312 n 144 PRO 312 A LEU 313 n 145 LEU 313 A ILE 314 n 146 ILE 314 A LYS 315 n 147 LYS 315 A PHE 316 n 148 PHE 316 A GLN 317 n 149 GLN 317 A VAL 318 n 150 VAL 318 A GLY 319 n 151 GLY 319 A LEU 320 n 152 LEU 320 A LYS 321 n 153 LYS 321 A LYS 322 n 154 LYS 322 A LEU 323 n 155 LEU 323 A ASN 324 n 156 ASN 324 A LEU 325 n 157 LEU 325 A HIS 326 n 158 HIS 326 A GLU 327 n 159 GLU 327 A GLU 328 n 160 GLU 328 A GLU 329 n 161 GLU 329 A HIS 330 n 162 HIS 330 A VAL 331 n 163 VAL 331 A LEU 332 n 164 LEU 332 A LEU 333 n 165 LEU 333 A MET 334 n 166 MET 334 A ALA 335 n 167 ALA 335 A ILE 336 n 168 ILE 336 A CYS 337 n 169 CYS 337 A ILE 338 n 170 ILE 338 A VAL 339 n 171 VAL 339 A SER 340 n 172 SER 340 A PRO 341 n 173 PRO 341 A ASP 342 n 174 ASP 342 A ARG 343 n 175 ARG 343 A PRO 344 n 176 PRO 344 A GLY 345 n 177 GLY 345 A VAL 346 n 178 VAL 346 A GLN 347 n 179 GLN 347 A ASP 348 n 180 ASP 348 A ALA 349 n 181 ALA 349 A ALA 350 n 182 ALA 350 A LEU 351 n 183 LEU 351 A ILE 352 n 184 ILE 352 A GLU 353 n 185 GLU 353 A ALA 354 n 186 ALA 354 A ILE 355 n 187 ILE 355 A GLN 356 n 188 GLN 356 A ASP 357 n 189 ASP 357 A ARG 358 n 190 ARG 358 A LEU 359 n 191 LEU 359 A SER 360 n 192 SER 360 A ASN 361 n 193 ASN 361 A THR 362 n 194 THR 362 A LEU 363 n 195 LEU 363 A GLN 364 n 196 GLN 364 A THR 365 n 197 THR 365 A TYR 366 n 198 TYR 366 A ILE 367 n 199 ILE 367 A ARG 368 n 200 ARG 368 A CYS 369 n 201 CYS 369 A ARG 370 n 202 ARG 370 A HIS 371 n 203 HIS 371 A PRO 372 n 204 PRO 372 A PRO 373 n 205 PRO 373 A PRO 374 n 206 PRO 374 A GLY 375 n 207 GLY 375 A SER 376 n 208 SER 376 A ALA 377 n 209 HIS 377 A LEU 378 n 210 LEU 378 A LEU 379 n 211 LEU 379 A TYR 380 n 212 TYR 380 A ALA 381 n 213 ALA 381 A LYS 382 n 214 LYS 382 A MET 383 n 215 MET 383 A ILE 384 n 216 ILE 384 A GLN 385 n 217 GLN 385 A LYS 386 n 218 LYS 386 A LEU 387 n 219 LEU 387 A ALA 388 n 220 ALA 388 A ASP 389 n 221 ASP 389 A LEU 390 n 222 LEU 390 A ARG 391 n 223 ARG 391 A SER 392 n 224 SER 392 A LEU 393 n 225 LEU 393 A ASN 394 n 226 ASN 394 A GLU 395 n 227 GLU 395 A GLU 396 n 228 GLU 396 A HIS 397 n 229 HIS 397 A SER 398 n 230 SER 398 A LYS 399 n 231 LYS 399 A GLN 400 n 232 GLN 400 A TYR 401 n 233 TYR 401 A ARG 402 n 234 ARG 402 A CYS 403 n 235 CYS 403 A LEU 404 n 236 LEU 404 A SER 405 n 237 SER 405 A PHE 406 n 238 PHE 406 A GLN 407 n 239 GLN 407 A PRO 408 n 240 PRO 408 A GLU 409 n 241 GLU 409 A CYS 410 n 242 CYS 410 A SER 411 n 243 SER 411 A MET 412 n 244 MET 412 A LYS 413 n 245 LYS 413 A LEU 414 n 246 LEU 414 A THR 415 n 247 THR 415 A PRO 416 n 248 PRO 416 A LEU 417 n 249 LEU 417 A VAL 418 n 250 VAL 418 A LEU 419 n 251 LEU 419 A GLU 420 n 252 GLU 420 A VAL 421 n 253 VAL 421 A PHE 422 n 254 PHE 422 A GLY 423 n 255 GLY 423 A n 256 424 A n 257 425 A n 258 426 A n 259 427 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 280 A N THR 112 A O SER 285 A O SER 117 A O TRP 286 A O TRP 118 A N TYR 295 A N TYR 127 1 A CG HIS 377 A CG HIS 209 1 Y 1 A ND1 HIS 377 A ND1 HIS 209 1 Y 1 A CD2 HIS 377 A CD2 HIS 209 1 Y 1 A CE1 HIS 377 A CE1 HIS 209 1 Y 1 A NE2 HIS 377 A NE2 HIS 209 1 Y 1 A ASN 424 A ASN 256 1 Y 1 A GLU 425 A GLU 257 1 Y 1 A ILE 426 A ILE 258 1 Y 1 A SER 427 A SER 259 1 Y 1 A C20 VDX 500 WRONG HAND 1 A ASP 118 0.372 SIDE CHAIN 1 -68.52 1.90 123.30 54.78 A A A OD1 CG OD2 ASP ASP ASP 118 118 118 N 1 -18.94 0.90 118.30 99.36 A A A CB CG OD1 ASP ASP ASP 118 118 118 N 1 A A CG OD1 ASP ASP 118 118 1.144 0.023 1.249 2.393 N 1 A A CG OD2 ASP ASP 118 118 1.148 0.023 1.249 2.397 N 1 A SER 119 -30.29 113.96 1 A ASP 161 -150.49 46.70 1 A ASP 283 -140.70 13.97 1 A GLN 347 -94.52 -67.82 1 A LEU 414 -102.69 -153.86 0.2480000 0.2140000 1.4 6.0 4256 42311 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT Engh & Huber 1.4 6.0 225 2276 30 0 2021 1.6 0.011 1.4 15.0 1IE9 42311 0.2360000 1 23.4 3.6 73.4 0.2360000 1.4 1.43 81.1 refinement CNS data reduction DENZO data scaling CCP4 (TRUNCATE) phasing CNS Crystal Structure Of The Nuclear Receptor For Vitamin D Ligand Binding Domain Bound to MC1288 1 N N 2 N N 3 N N A SER 125 A SER 8 HELX_P A TYR 143 A TYR 26 1 1 19 A ASP 149 A ASP 32 HELX_P A PHE 153 A PHE 36 5 2 5 A SER 216 A SER 48 HELX_P A LEU 224 A LEU 56 1 3 9 A MET 226 A MET 58 HELX_P A MET 247 A MET 79 1 4 22 A GLY 250 A GLY 82 HELX_P A LEU 254 A LEU 86 5 5 5 A THR 255 A THR 87 HELX_P A SER 275 A SER 107 1 6 21 A ASN 290 A ASN 122 HELX_P A ASP 292 A ASP 124 5 7 3 A ARG 296 A ARG 128 HELX_P A LYS 302 A LYS 134 1 8 7 A SER 306 A SER 138 HELX_P A LYS 322 A LYS 154 1 9 17 A HIS 326 A HIS 158 HELX_P A VAL 339 A VAL 171 1 10 14 A ASP 348 A ASP 180 HELX_P A HIS 371 A HIS 203 1 11 24 A LEU 378 A LEU 210 HELX_P A SER 405 A SER 237 1 12 28 A GLU 409 A GLU 241 HELX_P A LEU 414 A LEU 246 1 13 6 A THR 415 A THR 247 HELX_P A GLY 423 A GLY 255 1 14 9 GENE REGULATION vdr, MC1288, GENE REGULATION A PRO 373 A PRO 205 1 A PRO 374 A PRO 206 0.00 VDR_HUMAN UNP 1 118 P11473 DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGG VDR_HUMAN UNP 1 216 P11473 SVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKY RVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPG SHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFGNEIS 118 164 1IE9 118 164 P11473 A 1 1 47 216 427 1IE9 216 427 P11473 A 2 48 259 3 anti-parallel anti-parallel A PHE 279 A PHE 111 A THR 280 A THR 112 A SER 285 A SER 117 A THR 287 A THR 119 A LYS 294 A LYS 126 A TYR 295 A TYR 127 BINDING SITE FOR RESIDUE VDX A 500 A VDX 500 Software 13 A TYR 143 A TYR 26 13 1_555 A TYR 147 A TYR 30 13 1_555 A LEU 227 A LEU 59 13 1_555 A LEU 233 A LEU 65 13 1_555 A VAL 234 A VAL 66 13 1_555 A SER 237 A SER 69 13 1_555 A ARG 274 A ARG 106 13 1_555 A SER 275 A SER 107 13 1_555 A SER 278 A SER 110 13 1_555 A TRP 286 A TRP 118 13 1_555 A CYS 288 A CYS 120 13 1_555 A HIS 305 A HIS 137 13 1_555 A HIS 397 A HIS 229 13 1_555 19 P 21 21 21