1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Soliva, R. Monaco, V. Gomez-Pinto, I. Meeuwenoord, N.J. van der Marel, G.A. van Boom, J.H. Gonzalez, C. Orozco, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C8 H18 114.229 N-OCTANE non-polymer UK Nucleic Acids Res. NARHAD 0389 0305-1048 29 2973 2985 10.1093/nar/29.14.2973 11452022 Solution structure of a DNA duplex with a chiral alkyl phosphonate moiety. 2001 10.2210/pdb1iey/pdb pdb_00001iey 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2998.983 5'-D(P*CP*CP*AP*CP*CP*(OCT)GP*GP*AP*AP*C)-3' 1 syn polymer 3092.013 5'-D(*GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3' 1 syn polymer 114.229 N-OCTANE 1 syn non-polymer no no (DC)(DC)(DA)(DC)(DC)(DG)(DG)(DA)(DA)(DC) CCACCGGAAC A polydeoxyribonucleotide no no (DG)(DT)(DT)(DC)(DC)(DG)(DG)(DT)(DG)(DG) GTTCCGGTGG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n 9.180 1 19 A 1 B 20 -2.985 A_DC1:DG20_B 1 -23.031 -0.392 -0.317 0.077 4.787 1 19 A 2 B 19 0.671 A_DC2:DG19_B 2 -21.888 -0.790 -0.695 -0.199 -10.258 1 20 A 3 B 18 2.689 A_DA3:DT18_B 3 -19.625 0.192 -0.199 0.087 -22.116 1 19 A 4 B 17 -3.558 A_DC4:DG17_B 4 -12.381 -0.114 0.377 0.050 -12.911 1 19 A 5 B 16 4.077 A_DC5:DG16_B 5 4.370 0.109 -0.044 0.123 6.632 1 19 A 6 B 15 0.742 A_DG6:DC15_B 6 13.064 -0.168 -0.017 0.023 24.705 1 19 A 7 B 14 0.618 A_DG7:DC14_B 7 -1.261 0.243 0.565 0.193 3.694 1 20 A 8 B 13 1.223 A_DA8:DT13_B 8 -24.844 0.483 -0.046 0.003 -2.177 1 A 9 B 12 12.597 A_DA9:DT12_B 9 -27.685 -0.373 0.672 0.356 -22.112 1 19 A 10 B 11 -3.043 A_DC10:DG11_B 10 -17.334 0.908 0.225 -0.207 3.347 43.471 A A 1 2 -2.121 B B 20 19 3.353 -1.565 0.516 1.268 AA_DC1DC2:DG19DG20_BB 1 6.896 -9.348 42.919 1.868 -0.009 3.505 38.902 A A 2 3 30.656 B B 19 18 3.705 19.491 0.044 0.636 AA_DC2DA3:DT18DG19_BB 2 -5.152 8.104 33.444 -1.871 -0.813 3.243 30.413 A A 3 4 7.025 B B 18 17 3.322 3.658 -0.522 -0.813 AA_DA3DC4:DG17DT18_BB 3 -5.389 10.349 29.723 -2.294 -0.101 3.164 42.118 A A 4 5 -3.763 B B 17 16 3.148 -2.702 0.729 -0.014 AA_DC4DC5:DG16DG17_BB 4 1.361 -1.896 42.014 0.250 -0.878 2.225 19.651 A A 5 6 35.675 B B 16 15 2.812 11.422 -0.431 -0.136 AA_DC5DG6:DC15DG16_BB 5 -0.372 1.162 16.012 -5.092 1.111 3.150 33.745 A A 6 7 2.390 B B 15 14 3.115 1.387 -0.520 0.757 AA_DG6DG7:DC14DC15_BB 6 -0.489 0.843 33.714 1.089 0.820 3.646 42.915 A A 7 8 14.909 B B 14 13 3.777 10.785 -0.337 0.118 AA_DG7DA8:DT13DC14_BB 7 4.161 -5.752 41.400 -1.079 0.939 2.967 35.657 A A 8 9 -2.242 B B 13 12 3.044 -1.369 0.454 -0.190 AA_DA8DA9:DT12DT13_BB 8 -4.662 7.636 35.335 -0.127 -1.365 3.711 38.311 A A 9 10 4.680 B B 12 11 3.723 3.068 -0.552 0.123 AA_DA9DC10:DG11DT12_BB 9 0.722 -1.101 38.186 -0.250 0.944 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-07-25 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id diaestereoisomer S RCSB Y RCSB 2001-04-11 REL OCT N-OCTANE all calculated structures submitted 10 10 2D NOESY 2D NOESY DQF-COSY 7.0 1 atm 278 K 7.0 1 atm 298 K the structures are based on a total of 280 NOE-derived distance constraints obtained from a complete relaxation matrix refinement. The structures were calculated by using restrained molecular dynamics with explicit solvent, and applying the particle mesh Ewald method. simulated, annealing molecular dynamics, matrix relaxation 2mM duplex; 10mM phosphate, 100mM NaCl 90% H20, 10% D2O 2mM duplex; 10mM phosphate, 100mM NaCl D2O James, T.L. iterative matrix relaxation MARDIGRAS 5.2 Kollman, P.A. refinement Amber 5.0 Bruker collection XwinNMR 1.3 600 Bruker AMX +G 6 3 OCT OCT 11 A C 1 n 1 DC 1 A C 2 n 2 DC 2 A A 3 n 3 DA 3 A C 4 n 4 DC 4 A C 5 n 5 DC 5 A +G 6 n 6 DG 6 A G 7 n 7 DG 7 A A 8 n 8 DA 8 A A 9 n 9 DA 9 A C 10 n 10 DC 10 A G 11 n 1 DG 11 B T 12 n 2 DT 12 B T 13 n 3 DT 13 B C 14 n 4 DC 14 B C 15 n 5 DC 15 B G 16 n 6 DG 16 B G 17 n 7 DG 17 B T 18 n 8 DT 18 B G 19 n 9 DG 19 B G 20 n 10 DG 20 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DG 6 0.098 SIDE CHAIN 1 A DC 10 0.081 SIDE CHAIN 1 B DG 11 0.104 SIDE CHAIN 1 B DT 13 0.069 SIDE CHAIN 1 B DG 16 0.133 SIDE CHAIN 1 B DG 19 0.059 SIDE CHAIN 2 A DG 6 0.102 SIDE CHAIN 2 A DC 10 0.076 SIDE CHAIN 2 B DG 11 0.077 SIDE CHAIN 2 B DT 13 0.072 SIDE CHAIN 2 B DG 16 0.125 SIDE CHAIN 2 B DG 19 0.062 SIDE CHAIN 3 A DG 6 0.115 SIDE CHAIN 3 A DC 10 0.076 SIDE CHAIN 3 B DG 11 0.073 SIDE CHAIN 3 B DT 13 0.080 SIDE CHAIN 3 B DG 16 0.055 SIDE CHAIN 3 B DG 19 0.074 SIDE CHAIN 4 A DG 6 0.091 SIDE CHAIN 4 A DC 10 0.077 SIDE CHAIN 4 B DT 13 0.068 SIDE CHAIN 4 B DG 16 0.130 SIDE CHAIN 4 B DG 17 0.071 SIDE CHAIN 5 A DG 6 0.097 SIDE CHAIN 5 A DC 10 0.092 SIDE CHAIN 5 B DT 13 0.085 SIDE CHAIN 5 B DG 16 0.119 SIDE CHAIN 5 B DG 17 0.067 SIDE CHAIN 5 B DG 19 0.065 SIDE CHAIN 6 A DA 9 0.066 SIDE CHAIN 6 A DC 10 0.098 SIDE CHAIN 6 B DT 13 0.077 SIDE CHAIN 6 B DG 16 0.057 SIDE CHAIN 6 B DG 19 0.067 SIDE CHAIN 7 A DG 6 0.074 SIDE CHAIN 7 A DC 10 0.092 SIDE CHAIN 7 B DG 11 0.074 SIDE CHAIN 7 B DT 13 0.073 SIDE CHAIN 7 B DG 16 0.083 SIDE CHAIN 7 B DG 19 0.069 SIDE CHAIN 8 A DG 6 0.058 SIDE CHAIN 8 A DC 10 0.076 SIDE CHAIN 8 B DG 11 0.069 SIDE CHAIN 8 B DT 13 0.071 SIDE CHAIN 8 B DG 16 0.053 SIDE CHAIN 8 B DG 17 0.070 SIDE CHAIN 8 B DG 19 0.070 SIDE CHAIN 9 A DG 6 0.057 SIDE CHAIN 9 A DC 10 0.090 SIDE CHAIN 9 B DT 13 0.068 SIDE CHAIN 9 B DG 16 0.117 SIDE CHAIN 9 B DG 17 0.069 SIDE CHAIN 9 B DG 19 0.061 SIDE CHAIN 10 A DC 10 0.099 SIDE CHAIN 10 B DG 11 0.069 SIDE CHAIN 10 B DT 13 0.091 SIDE CHAIN 10 B DC 14 0.086 SIDE CHAIN 10 B DG 16 0.128 SIDE CHAIN 10 B DG 17 0.084 SIDE CHAIN 10 B DG 19 0.064 SIDE CHAIN 1 -48.53 1.60 120.90 72.37 A A A P O5' C5' DC DC DC 1 1 1 N 1 4.33 0.30 108.30 112.63 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 3.88 0.30 108.30 112.18 A A A O4' C1' N1 DC DC DC 4 4 4 N 1 2.92 0.30 108.30 111.22 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 6.00 0.30 108.30 114.30 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 2.60 0.30 108.30 110.90 A A A O4' C1' N9 DA DA DA 9 9 9 N 1 3.88 0.30 108.30 112.18 A A A O4' C1' N1 DC DC DC 10 10 10 N 1 2.42 0.30 108.30 110.72 B B B O4' C1' N9 DG DG DG 11 11 11 N 1 2.76 0.30 108.30 111.06 B B B O4' C1' N1 DT DT DT 12 12 12 N 1 -4.65 0.60 122.90 118.25 B B B C6 C5 C7 DT DT DT 12 12 12 N 1 3.15 0.30 108.30 111.45 B B B O4' C1' N1 DT DT DT 13 13 13 N 1 -3.98 0.60 122.90 118.92 B B B C6 C5 C7 DT DT DT 13 13 13 N 1 3.54 0.30 108.30 111.84 B B B O4' C1' N9 DG DG DG 16 16 16 N 1 2.70 0.30 108.30 111.00 B B B O4' C1' N1 DT DT DT 18 18 18 N 1 -4.00 0.60 122.90 118.90 B B B C6 C5 C7 DT DT DT 18 18 18 N 1 3.00 0.30 108.30 111.30 B B B O4' C1' N9 DG DG DG 19 19 19 N 2 4.25 0.30 108.30 112.55 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 2.25 0.30 108.30 110.55 A A A O4' C1' N1 DC DC DC 2 2 2 N 2 2.51 0.30 108.30 110.81 A A A O4' C1' N1 DC DC DC 4 4 4 N 2 2.62 0.30 108.30 110.92 A A A O4' C1' N1 DC DC DC 5 5 5 N 2 5.81 0.30 108.30 114.11 A A A O4' C1' N9 DG DG DG 6 6 6 N 2 2.42 0.30 108.30 110.72 A A A O4' C1' N9 DA DA DA 9 9 9 N 2 4.21 0.30 108.30 112.51 A A A O4' C1' N1 DC DC DC 10 10 10 N 2 4.15 0.30 108.30 112.45 B B B O4' C1' N9 DG DG DG 11 11 11 N 2 -4.55 0.60 122.90 118.35 B B B C6 C5 C7 DT DT DT 12 12 12 N 2 3.13 0.30 108.30 111.43 B B B O4' C1' N1 DT DT DT 13 13 13 N 2 -4.27 0.60 122.90 118.63 B B B C6 C5 C7 DT DT DT 13 13 13 N 2 3.50 0.30 108.30 111.80 B B B O4' C1' N9 DG DG DG 16 16 16 N 2 3.14 0.30 108.30 111.44 B B B O4' C1' N1 DT DT DT 18 18 18 N 2 -4.54 0.60 122.90 118.36 B B B C6 C5 C7 DT DT DT 18 18 18 N 2 2.69 0.30 108.30 110.99 B B B O4' C1' N9 DG DG DG 19 19 19 N 2 1.85 0.30 108.30 110.15 B B B O4' C1' N9 DG DG DG 20 20 20 N 3 4.27 0.30 108.30 112.57 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 2.57 0.30 108.30 110.87 A A A O4' C1' N1 DC DC DC 4 4 4 N 3 2.44 0.30 108.30 110.74 A A A O4' C1' N1 DC DC DC 5 5 5 N 3 6.06 0.30 108.30 114.36 A A A O4' C1' N9 DG DG DG 6 6 6 N 3 2.58 0.30 108.30 110.88 A A A O4' C1' N9 DA DA DA 9 9 9 N 3 4.26 0.30 108.30 112.56 A A A O4' C1' N1 DC DC DC 10 10 10 N 3 4.12 0.30 108.30 112.42 B B B O4' C1' N9 DG DG DG 11 11 11 N 3 -4.61 0.60 122.90 118.29 B B B C6 C5 C7 DT DT DT 12 12 12 N 3 2.72 0.30 108.30 111.02 B B B O4' C1' N1 DT DT DT 13 13 13 N 3 -4.13 0.60 122.90 118.77 B B B C6 C5 C7 DT DT DT 13 13 13 N 3 1.97 0.30 108.30 110.27 B B B O4' C1' N1 DC DC DC 15 15 15 N 3 1.84 0.30 108.30 110.14 B B B O4' C1' N9 DG DG DG 17 17 17 N 3 3.00 0.30 108.30 111.30 B B B O4' C1' N1 DT DT DT 18 18 18 N 3 -4.07 0.60 122.90 118.83 B B B C6 C5 C7 DT DT DT 18 18 18 N 3 3.28 0.30 108.30 111.58 B B B O4' C1' N9 DG DG DG 19 19 19 N 4 3.11 0.30 108.30 111.41 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 2.76 0.30 108.30 111.06 A A A O4' C1' N1 DC DC DC 2 2 2 N 4 3.81 0.30 108.30 112.11 A A A O4' C1' N1 DC DC DC 4 4 4 N 4 2.93 0.30 108.30 111.23 A A A O4' C1' N1 DC DC DC 5 5 5 N 4 5.85 0.30 108.30 114.15 A A A O4' C1' N9 DG DG DG 6 6 6 N 4 2.84 0.30 108.30 111.14 A A A O4' C1' N9 DA DA DA 9 9 9 N 4 4.12 0.30 108.30 112.42 A A A O4' C1' N1 DC DC DC 10 10 10 N 4 4.34 0.30 108.30 112.64 B B B O4' C1' N9 DG DG DG 11 11 11 N 4 -4.70 0.60 122.90 118.20 B B B C6 C5 C7 DT DT DT 12 12 12 N 4 3.45 0.30 108.30 111.75 B B B O4' C1' N1 DT DT DT 13 13 13 N 4 -4.61 0.60 122.90 118.29 B B B C6 C5 C7 DT DT DT 13 13 13 N 4 3.35 0.30 108.30 111.65 B B B O4' C1' N9 DG DG DG 16 16 16 N 4 3.72 0.30 108.30 112.02 B B B O4' C1' N1 DT DT DT 18 18 18 N 4 -3.99 0.60 122.90 118.91 B B B C6 C5 C7 DT DT DT 18 18 18 N 4 8.07 1.20 119.70 127.77 B B B C3' O3' P DT DT DG 18 18 19 Y 5 3.52 0.30 108.30 111.82 A A A O4' C1' N1 DC DC DC 1 1 1 N 5 2.73 0.30 108.30 111.03 A A A O4' C1' N1 DC DC DC 2 2 2 N 5 3.70 0.30 108.30 112.00 A A A O4' C1' N1 DC DC DC 4 4 4 N 5 2.91 0.30 108.30 111.21 A A A O4' C1' N1 DC DC DC 5 5 5 N 5 5.81 0.30 108.30 114.11 A A A O4' C1' N9 DG DG DG 6 6 6 N 5 2.48 0.30 108.30 110.78 A A A O4' C1' N9 DA DA DA 9 9 9 N 5 3.83 0.30 108.30 112.13 A A A O4' C1' N1 DC DC DC 10 10 10 N 5 4.32 0.30 108.30 112.62 B B B O4' C1' N9 DG DG DG 11 11 11 N 5 -4.65 0.60 122.90 118.25 B B B C6 C5 C7 DT DT DT 12 12 12 N 5 3.27 0.30 108.30 111.57 B B B O4' C1' N1 DT DT DT 13 13 13 N 5 -3.93 0.60 122.90 118.97 B B B C6 C5 C7 DT DT DT 13 13 13 N 5 7.99 1.20 119.70 127.69 B B B C3' O3' P DT DT DC 13 13 14 Y 5 3.30 0.30 108.30 111.60 B B B O4' C1' N9 DG DG DG 16 16 16 N 5 2.70 0.30 108.30 111.00 B B B O4' C1' N1 DT DT DT 18 18 18 N 5 -4.16 0.60 122.90 118.74 B B B C6 C5 C7 DT DT DT 18 18 18 N 5 2.98 0.30 108.30 111.28 B B B O4' C1' N9 DG DG DG 19 19 19 N 5 1.96 0.30 108.30 110.26 B B B O4' C1' N9 DG DG DG 20 20 20 N 6 4.07 0.30 108.30 112.37 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 2.28 0.30 108.30 110.58 A A A O4' C1' N1 DC DC DC 2 2 2 N 6 1.86 0.30 108.30 110.16 A A A O4' C1' N1 DC DC DC 4 4 4 N 6 3.65 0.60 106.00 109.65 A A A O4' C4' C3' DC DC DC 5 5 5 N 6 4.29 0.30 108.30 112.59 A A A O4' C1' N1 DC DC DC 5 5 5 N 6 2.24 0.30 108.30 110.54 A A A O4' C1' N9 DA DA DA 9 9 9 N 6 3.75 0.30 108.30 112.05 A A A O4' C1' N1 DC DC DC 10 10 10 N 6 4.64 0.30 108.30 112.94 B B B O4' C1' N9 DG DG DG 11 11 11 N 6 -4.12 0.60 122.90 118.78 B B B C6 C5 C7 DT DT DT 12 12 12 N 6 2.53 0.30 108.30 110.83 B B B O4' C1' N1 DT DT DT 13 13 13 N 6 -4.14 0.60 122.90 118.76 B B B C6 C5 C7 DT DT DT 13 13 13 N 6 2.18 0.30 108.30 110.48 B B B O4' C1' N1 DC DC DC 15 15 15 N 6 1.86 0.30 108.30 110.16 B B B O4' C1' N9 DG DG DG 16 16 16 N 6 3.20 0.30 108.30 111.50 B B B O4' C1' N1 DT DT DT 18 18 18 N 6 -4.03 0.60 122.90 118.87 B B B C6 C5 C7 DT DT DT 18 18 18 N 6 3.03 0.30 108.30 111.33 B B B O4' C1' N9 DG DG DG 19 19 19 N 7 4.09 0.30 108.30 112.39 A A A O4' C1' N1 DC DC DC 1 1 1 N 7 2.66 0.30 108.30 110.96 A A A O4' C1' N1 DC DC DC 2 2 2 N 7 3.26 0.30 108.30 111.56 A A A O4' C1' N1 DC DC DC 4 4 4 N 7 3.76 0.30 108.30 112.06 A A A O4' C1' N1 DC DC DC 5 5 5 N 7 2.16 0.30 108.30 110.46 A A A O4' C1' N9 DG DG DG 6 6 6 N 7 1.93 0.30 108.30 110.23 A A A O4' C1' N9 DA DA DA 8 8 8 N 7 7.38 1.20 119.70 127.08 A A A C3' O3' P DA DA DA 8 8 9 Y 7 3.82 0.30 108.30 112.12 A A A O4' C1' N1 DC DC DC 10 10 10 N 7 4.30 0.30 108.30 112.60 B B B O4' C1' N9 DG DG DG 11 11 11 N 7 -4.69 0.60 122.90 118.21 B B B C6 C5 C7 DT DT DT 12 12 12 N 7 2.87 0.30 108.30 111.17 B B B O4' C1' N1 DT DT DT 13 13 13 N 7 -4.72 0.60 122.90 118.18 B B B C6 C5 C7 DT DT DT 13 13 13 N 7 7.41 1.20 119.70 127.11 B B B C3' O3' P DC DC DC 14 14 15 Y 7 2.72 0.30 108.30 111.02 B B B O4' C1' N9 DG DG DG 16 16 16 N 7 2.85 0.30 108.30 111.15 B B B O4' C1' N1 DT DT DT 18 18 18 N 7 -4.09 0.60 122.90 118.81 B B B C6 C5 C7 DT DT DT 18 18 18 N 7 3.25 0.30 108.30 111.55 B B B O4' C1' N9 DG DG DG 19 19 19 N 7 1.88 0.30 108.30 110.18 B B B O4' C1' N9 DG DG DG 20 20 20 N 8 4.21 0.30 108.30 112.51 A A A O4' C1' N1 DC DC DC 1 1 1 N 8 2.60 0.30 108.30 110.90 A A A O4' C1' N1 DC DC DC 2 2 2 N 8 2.99 0.30 108.30 111.29 A A A O4' C1' N1 DC DC DC 4 4 4 N 8 3.71 0.30 108.30 112.01 A A A O4' C1' N1 DC DC DC 5 5 5 N 8 4.06 0.60 106.00 110.06 A A A O4' C4' C3' DG DG DG 6 6 6 N 8 2.38 0.30 108.30 110.68 A A A O4' C1' N9 DA DA DA 9 9 9 N 8 4.18 0.30 108.30 112.48 A A A O4' C1' N1 DC DC DC 10 10 10 N 8 4.13 0.30 108.30 112.43 B B B O4' C1' N9 DG DG DG 11 11 11 N 8 -4.74 0.60 122.90 118.16 B B B C6 C5 C7 DT DT DT 12 12 12 N 8 2.71 0.30 108.30 111.01 B B B O4' C1' N1 DT DT DT 13 13 13 N 8 -4.34 0.60 122.90 118.56 B B B C6 C5 C7 DT DT DT 13 13 13 N 8 2.45 0.30 108.30 110.75 B B B O4' C1' N1 DC DC DC 15 15 15 N 8 2.27 0.30 108.30 110.57 B B B O4' C1' N9 DG DG DG 16 16 16 N 8 4.80 0.30 108.30 113.10 B B B O4' C1' N1 DT DT DT 18 18 18 N 8 -4.83 0.60 122.90 118.07 B B B C6 C5 C7 DT DT DT 18 18 18 N 8 3.37 0.30 108.30 111.67 B B B O4' C1' N9 DG DG DG 19 19 19 N 8 1.90 0.30 108.30 110.20 B B B O4' C1' N9 DG DG DG 20 20 20 N 9 4.21 0.30 108.30 112.51 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 2.58 0.30 108.30 110.88 A A A O4' C1' N1 DC DC DC 2 2 2 N 9 3.10 0.30 108.30 111.40 A A A O4' C1' N1 DC DC DC 4 4 4 N 9 3.97 0.30 108.30 112.27 A A A O4' C1' N1 DC DC DC 5 5 5 N 9 3.75 0.60 106.00 109.75 A A A O4' C4' C3' DG DG DG 6 6 6 N 9 1.98 0.30 108.30 110.28 A A A O4' C1' N9 DA DA DA 8 8 8 N 9 7.44 1.20 119.70 127.14 A A A C3' O3' P DA DA DA 8 8 9 Y 9 4.05 0.30 108.30 112.35 A A A O4' C1' N1 DC DC DC 10 10 10 N 9 4.40 0.30 108.30 112.70 B B B O4' C1' N9 DG DG DG 11 11 11 N 9 -4.75 0.60 122.90 118.15 B B B C6 C5 C7 DT DT DT 12 12 12 N 9 2.88 0.30 108.30 111.18 B B B O4' C1' N1 DT DT DT 13 13 13 N 9 -4.17 0.60 122.90 118.73 B B B C6 C5 C7 DT DT DT 13 13 13 N 9 3.71 0.30 108.30 112.01 B B B O4' C1' N9 DG DG DG 16 16 16 N 9 3.20 0.30 108.30 111.50 B B B O4' C1' N1 DT DT DT 18 18 18 N 9 -4.27 0.60 122.90 118.63 B B B C6 C5 C7 DT DT DT 18 18 18 N 9 2.82 0.30 108.30 111.12 B B B O4' C1' N9 DG DG DG 19 19 19 N 9 1.83 0.30 108.30 110.13 B B B O4' C1' N9 DG DG DG 20 20 20 N 10 3.90 0.30 108.30 112.20 A A A O4' C1' N1 DC DC DC 1 1 1 N 10 2.57 0.30 108.30 110.87 A A A O4' C1' N1 DC DC DC 2 2 2 N 10 3.24 0.30 108.30 111.54 A A A O4' C1' N1 DC DC DC 4 4 4 N 10 3.79 0.60 106.00 109.79 A A A O4' C4' C3' DC DC DC 5 5 5 N 10 4.48 0.30 108.30 112.78 A A A O4' C1' N1 DC DC DC 5 5 5 N 10 1.90 0.30 108.30 110.20 A A A O4' C1' N9 DA DA DA 8 8 8 N 10 7.41 1.20 119.70 127.11 A A A C3' O3' P DA DA DA 8 8 9 Y 10 3.59 0.30 108.30 111.89 A A A O4' C1' N1 DC DC DC 10 10 10 N 10 3.77 0.30 108.30 112.07 B B B O4' C1' N9 DG DG DG 11 11 11 N 10 -4.40 0.60 122.90 118.50 B B B C6 C5 C7 DT DT DT 12 12 12 N 10 2.47 0.30 108.30 110.77 B B B O4' C1' N1 DC DC DC 14 14 14 N 10 3.26 0.30 108.30 111.56 B B B O4' C1' N9 DG DG DG 16 16 16 N 10 4.62 0.30 108.30 112.92 B B B O4' C1' N1 DT DT DT 18 18 18 N 10 -4.40 0.60 122.90 118.50 B B B C6 C5 C7 DT DT DT 18 18 18 N 10 3.14 0.30 108.30 111.44 B B B O4' C1' N9 DG DG DG 19 19 19 N 10 1.97 0.30 108.30 110.27 B B B O4' C1' N9 DG DG DG 20 20 20 N 1 A A P O5' DC DC 1 1 10.673 0.010 1.593 12.266 N SOLUTION STRUCTURE OF THE DNA DUPLEX D(CCACCGGAAC).(GTTCCGGTGG) WITH A CHIRAL ALKYL-PHOSPHONATE MOIETY (DIAESTEREOISOMER R) 1 N N 2 N N 3 N N covale 1.857 one A DG 6 A P DG 6 1_555 A OCT 11 C C1 OCT 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 20 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 20 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 20 B N2 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 18 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 18 B O4 DT 8 1_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 B DG 17 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 B DG 17 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 B DG 17 B N2 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 16 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 16 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 16 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 15 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 15 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 15 B N4 DC 5 1_555 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 B DC 14 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 B DC 14 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 B DC 14 B N4 DC 4 1_555 hydrog WATSON-CRICK A DA 8 A N1 DA 8 1_555 B DT 13 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 8 A N6 DA 8 1_555 B DT 13 B O4 DT 3 1_555 hydrog DA-DT PAIR A DA 9 A N1 DA 9 1_555 B DT 12 B N3 DT 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 11 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 11 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 11 B N2 DG 1 1_555 DNA double helix, dna bending, modified oligonucleotide, charge neutralization, DNA 1IEY PDB 1 1IEY 1IEY PDB 2 1IEY 1 10 1IEY 1 10 1IEY A 1 1 10 11 20 1IEY 11 20 1IEY B 2 1 10 BINDING SITE FOR RESIDUE OCT A 11 A OCT 11 Software 2 A DC 5 A DC 5 2 1_555 A DG 6 A DG 6 2 1_555