1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Marvin, D.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N C N 64 N O N 65 N N N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N N N 78 S C N 79 N C N 80 N O N 81 N C N 82 N C N 83 N C N 84 N O N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 N C N 98 N C N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 S C N 111 N C N 112 N C N 113 N C N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 S C N 130 N C N 131 N O N 132 N C N 133 N C N 134 N C N 135 N C N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N C N 158 N N N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C N 180 N C N 181 N S N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N O N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 R C N 214 N O N 215 N C N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C Y 231 N C Y 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C N 255 N C N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N doub Y 226 N sing Y 227 N sing N 228 N sing Y 229 N doub N 230 N sing Y 231 N doub N 232 N sing Y 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing US Phase Transitions PHTRDP 1101 0141-1594 39 45 -1 Two Forms of Pf1 Inovirus: X-Ray Diffraction Studies on a Structural Phase Transition and a Calculated Libration Normal Mode of the Asymmetric Unit 1992 UK Int.J.Biol.Macromol. IJBMDR 0708 0141-8130 12 125 Model-Building Studies of Inovirus: Genetic Variations on a Geometric Theme 1990 UK Int.J.Biol.Macromol. IJBMDR 0708 0141-8130 11 159 Dynamics of Telescoping Inovirus: A Mechanism for Assembly at Membrane Adhesions 1989 UK J.Mol.Biol. JMOBAK 0070 0022-2836 193 315 Pf1 Inovirus. Electron Density Distribution Calculated by a Maximum Entropy Algorithm from Native Fiber Diffraction Data to 3 Angstroms Resolution and Single Isomorphous Replacement Data to 5 Angstroms Resolution 1987 UK J.Mol.Biol. JMOBAK 0070 0022-2836 149 675 Pf1 Filamentous Bacterial Virus. X-Ray Fibre Diffraction Analysis of Two Heavy-Atom Derivatives 1981 UK J.Mol.Biol. JMOBAK 0070 0022-2836 82 121 Filamentous Bacterial Viruses Xi. Molecular Architecture of the Class II (Pf1, Xf) Virion 1974 10.2210/pdb1ifm/pdb pdb_00001ifm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 1 1.0 4612.393 INOVIRUS 1 man polymer no no GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA GVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLRKA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Inovirus PF1 MAJOR sample 10871 Pseudomonas phage Pf1 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1994-07-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.type Y BNL 1994-01-31 REL 1 no 1 35 3.050000 65.915000 GLY 1 n 1 GLY 1 A VAL 2 n 2 VAL 2 A ILE 3 n 3 ILE 3 A ASP 4 n 4 ASP 4 A THR 5 n 5 THR 5 A SER 6 n 6 SER 6 A ALA 7 n 7 ALA 7 A VAL 8 n 8 VAL 8 A GLU 9 n 9 GLU 9 A SER 10 n 10 SER 10 A ALA 11 n 11 ALA 11 A ILE 12 n 12 ILE 12 A THR 13 n 13 THR 13 A ASP 14 n 14 ASP 14 A GLY 15 n 15 GLY 15 A GLN 16 n 16 GLN 16 A GLY 17 n 17 GLY 17 A ASP 18 n 18 ASP 18 A MET 19 n 19 MET 19 A LYS 20 n 20 LYS 20 A ALA 21 n 21 ALA 21 A ILE 22 n 22 ILE 22 A GLY 23 n 23 GLY 23 A GLY 24 n 24 GLY 24 A TYR 25 n 25 TYR 25 A ILE 26 n 26 ILE 26 A VAL 27 n 27 VAL 27 A GLY 28 n 28 GLY 28 A ALA 29 n 29 ALA 29 A LEU 30 n 30 LEU 30 A VAL 31 n 31 VAL 31 A ILE 32 n 32 ILE 32 A LEU 33 n 33 LEU 33 A ALA 34 n 34 ALA 34 A VAL 35 n 35 VAL 35 A ALA 36 n 36 ALA 36 A GLY 37 n 37 GLY 37 A LEU 38 n 38 LEU 38 A ILE 39 n 39 ILE 39 A TYR 40 n 40 TYR 40 A SER 41 n 41 SER 41 A MET 42 n 42 MET 42 A LEU 43 n 43 LEU 43 A ARG 44 n 44 ARG 44 A LYS 45 n 45 LYS 45 A ALA 46 n 46 ALA 46 A representative helical assembly 35 helical helical asymmetric unit 1 monomeric helical asymmetric unit, std helical frame 1 monomeric 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 1_555 x,y,z identity operation 0.00000 0.00000 0.00000 0.75978219 0.65017769 0.00000000 -0.65017769 0.75978219 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -51.85000 0.90363453 -0.42830438 0.00000000 0.42830438 0.90363453 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -48.80000 -0.02225111 -0.99975241 0.00000000 0.99975241 -0.02225111 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -45.75000 -0.92179550 -0.38767648 0.00000000 0.38767648 -0.92179550 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -42.70000 -0.73010265 0.68333749 0.00000000 -0.68333749 -0.73010265 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -39.65000 0.32589818 0.94540487 0.00000000 -0.94540487 0.32589818 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -36.60000 0.99609518 0.08828583 0.00000000 -0.08828583 0.99609518 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -33.55000 0.48709771 -0.87334748 0.00000000 0.87334748 0.48709771 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -30.50000 -0.59853435 -0.80109714 0.00000000 0.80109714 -0.59853435 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -27.45000 -0.97561123 0.21950567 0.00000000 -0.21950567 -0.97561123 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -24.40000 -0.19774288 0.98025392 0.00000000 -0.98025392 -0.19774288 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -21.35000 0.81421686 0.58056086 0.00000000 -0.58056086 0.81421686 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -18.30000 0.86229279 -0.50641006 0.00000000 0.50641006 0.86229279 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -15.25000 -0.11042820 -0.99388410 0.00000000 0.99388410 -0.11042820 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -12.20000 -0.95242240 -0.30478119 0.00000000 0.30478119 -0.95242240 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -9.15000 -0.66692271 0.74512690 0.00000000 -0.74512690 -0.66692271 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -6.10000 0.40809147 0.91294105 0.00000000 -0.91294105 0.40809147 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 -3.05000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 1.00000000 1_555 x,y,z identity operation 0.00000 0.00000 -0.00000 0.40809147 -0.91294105 0.00000000 0.91294105 0.40809147 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 3.05000 -0.66692271 -0.74512690 0.00000000 0.74512690 -0.66692271 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 6.10000 -0.95242240 0.30478119 0.00000000 -0.30478119 -0.95242240 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 9.15000 -0.11042820 0.99388410 0.00000000 -0.99388410 -0.11042820 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 12.20000 0.86229279 0.50641006 0.00000000 -0.50641006 0.86229279 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 15.25000 0.81421686 -0.58056086 0.00000000 0.58056086 0.81421686 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 18.30000 -0.19774288 -0.98025392 0.00000000 0.98025392 -0.19774288 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 21.35000 -0.97561123 -0.21950567 0.00000000 0.21950567 -0.97561123 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 24.40000 -0.59853435 0.80109714 0.00000000 -0.80109714 -0.59853435 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 27.45000 0.48709771 0.87334748 0.00000000 -0.87334748 0.48709771 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 30.50000 0.99609518 -0.08828583 0.00000000 0.08828583 0.99609518 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 33.55000 0.32589818 -0.94540487 0.00000000 0.94540487 0.32589818 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 36.60000 -0.73010265 -0.68333749 0.00000000 0.68333749 -0.73010265 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 39.65000 -0.92179550 0.38767648 0.00000000 -0.38767648 -0.92179550 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 42.70000 -0.02225111 0.99975241 0.00000000 -0.99975241 -0.02225111 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 45.75000 0.90363453 0.42830438 0.00000000 -0.42830438 0.90363453 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 48.80000 0.75978219 -0.65017769 0.00000000 0.65017769 0.75978219 0.00000000 0.00000000 0.00000000 1.00000000 helical symmetry operation 0.00000 0.00000 51.85000 THE MODEL IS REFINED USING THE JACK-LEVITT METHOD (M. LEVITT, J.MOL.BIOL. V. 82, 393, 1974; J.MOL.BIOL. V. 168, 595, 1983; A. JACK, M. LEVITT, ACTA CRYSTALLOG. V. A34, 931, 1978). SEE 1IFD FOR DETAILS. THE INDEXING OF UNITS ALONG THE BASIC HELIX IS ILLUSTRATED IN REFERENCE 2. TO GENERATE COORDINATES X(K), Y(K), Z(K) OF UNIT K FROM THE GIVEN COORDINATES X(0), Y(0), Z(0) OF UNIT 0 IN A UNIT CELL WITH HELIX PARAMETERS (TAU, P) = (66.667, 2.90), APPLY THE MATRIX AND VECTOR: | COS(TAU*K) -SIN(TAU*K) 0 | | 0 | | SIN(TAU*K) COS(TAU*K) 0 | + | 0 | | 0 0 1 | | P*K | THE NEIGHBORS IN CONTACT WITH UNIT 0 ARE UNITS K = +/-1, +/-5, +/-6, +/-11 AND +/-17. THESE SYMMETRY-RELATED COPIES ARE USED TO DETERMINE INTERCHAIN NON-BONDED CONTACTS DURING THE REFINEMENT. THE TEMPERATURE FACTOR WAS NOT REFINED AND IS GIVEN THE ARBITRARY VALUE OF 10. 3.3 1 3.3 0 322 0 0 322 refinement EREF TWO FORMS OF PF1 INOVIRUS: X-RAY DIFFRACTION STUDIES ON A STRUCTURAL PHASE TRANSITION AND A CALCULATED LIBRATION NORMAL MODE OF THE ASYMMETRIC UNIT 1 Y N A GLY 1 A GLY 1 HELX_P A ALA 46 A ALA 46 1 A 46 VIRUS VIRUS, Helical virus COATB_BPPF1 UNP 1 1 P03621 MKAMKQRIAKFSPVASFRNLCIAGSVTAATSLPAFAGVIDTSAVESAITDGQGDMKAIGGYIVGALVILAVAGLIYSMLR KA 37 82 1IFM 1 46 P03621 A 1 1 46 1 P 1