1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kozlov, G.
Siddiqui, N.
Coillet-Matillon, S.
Sprules, T.
Ekiel, I.
Gehring, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
277
22822
22828
10.1074/jbc.M201230200
11940585
Solution structure of the orphan PABC domain from Saccharomyces cerevisiae poly(A)-binding protein.
2002
10.2210/pdb1ifw/pdb
pdb_00001ifw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10445.410
POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND NUCLEAR
C-TERMINAL DOMAIN (490-576)
1
man
polymer
POLYADENYLATE TAIL-BINDING PROTEIN
no
no
GPLGSPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYES
FKKEQEQQTEQA
GPLGSPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYES
FKKEQEQQTEQA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
Escherichia
sample
PAB1
4932
Saccharomyces cerevisiae
562
Escherichia coli
BL21 GOLD
PLASMID
PGEX-6P-1
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-07-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2001-04-13
REL
REL
The structure was determined using standard triple-resonance and homonuclear
techniques. The N-terminal sequence GPLGS is a cloning artifact.
structures with the lowest energy
200
30
2D_NOESY
2D_NOESY
3D_15N-separated_NOESY
3D_13C-separated_NOESY
0.2
6.3
ambient
303
K
The structures are based on 972 NOE distance constraints, 69 dihedral angles
constraints and 40 hydrogen bonds.
simulated annealing
1
lowest energy
3mM protein, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3
90% H2O/10% D2O
3mM protein, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3
100% D2O
3mM protein U-15N, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3
90% H2O/10% D2O
3mM protein U-15N,13C, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3
100% D2O
Bruker
collection
XwinNMR
2.1
Delsuc
processing
Gifa
4.31
Wuthrich
data analysis
XEASY
1.3.13
Brunger
structure solution
CNS
0.9
Nilges
structure solution
ARIA
0.9
Brunger
refinement
CNS
0.9
500
Bruker
DRX
750
Varian
UNITYPLUS
GLY
1
n
1
GLY
1
A
PRO
2
n
2
PRO
2
A
LEU
3
n
3
LEU
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
PRO
6
n
6
PRO
6
A
ARG
7
n
7
ARG
7
A
ASN
8
n
8
ASN
8
A
ALA
9
n
9
ALA
9
A
ASN
10
n
10
ASN
10
A
ASP
11
n
11
ASP
11
A
ASN
12
n
12
ASN
12
A
ASN
13
n
13
ASN
13
A
GLN
14
n
14
GLN
14
A
PHE
15
n
15
PHE
15
A
TYR
16
n
16
TYR
16
A
GLN
17
n
17
GLN
17
A
GLN
18
n
18
GLN
18
A
LYS
19
n
19
LYS
19
A
GLN
20
n
20
GLN
20
A
ARG
21
n
21
ARG
21
A
GLN
22
n
22
GLN
22
A
ALA
23
n
23
ALA
23
A
LEU
24
n
24
LEU
24
A
GLY
25
n
25
GLY
25
A
GLU
26
n
26
GLU
26
A
GLN
27
n
27
GLN
27
A
LEU
28
n
28
LEU
28
A
TYR
29
n
29
TYR
29
A
LYS
30
n
30
LYS
30
A
LYS
31
n
31
LYS
31
A
VAL
32
n
32
VAL
32
A
SER
33
n
33
SER
33
A
ALA
34
n
34
ALA
34
A
LYS
35
n
35
LYS
35
A
THR
36
n
36
THR
36
A
SER
37
n
37
SER
37
A
ASN
38
n
38
ASN
38
A
GLU
39
n
39
GLU
39
A
GLU
40
n
40
GLU
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
GLY
43
n
43
GLY
43
A
LYS
44
n
44
LYS
44
A
ILE
45
n
45
ILE
45
A
THR
46
n
46
THR
46
A
GLY
47
n
47
GLY
47
A
MET
48
n
48
MET
48
A
ILE
49
n
49
ILE
49
A
LEU
50
n
50
LEU
50
A
ASP
51
n
51
ASP
51
A
LEU
52
n
52
LEU
52
A
PRO
53
n
53
PRO
53
A
PRO
54
n
54
PRO
54
A
GLN
55
n
55
GLN
55
A
GLU
56
n
56
GLU
56
A
VAL
57
n
57
VAL
57
A
PHE
58
n
58
PHE
58
A
PRO
59
n
59
PRO
59
A
LEU
60
n
60
LEU
60
A
LEU
61
n
61
LEU
61
A
GLU
62
n
62
GLU
62
A
SER
63
n
63
SER
63
A
ASP
64
n
64
ASP
64
A
GLU
65
n
65
GLU
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
GLU
68
n
68
GLU
68
A
GLN
69
n
69
GLN
69
A
HIS
70
n
70
HIS
70
A
TYR
71
n
71
TYR
71
A
LYS
72
n
72
LYS
72
A
GLU
73
n
73
GLU
73
A
ALA
74
n
74
ALA
74
A
SER
75
n
75
SER
75
A
ALA
76
n
76
ALA
76
A
ALA
77
n
77
ALA
77
A
TYR
78
n
78
TYR
78
A
GLU
79
n
79
GLU
79
A
SER
80
n
80
SER
80
A
PHE
81
n
81
PHE
81
A
LYS
82
n
82
LYS
82
A
LYS
83
n
83
LYS
83
A
GLU
84
n
84
GLU
84
A
GLN
85
n
85
GLN
85
A
GLU
86
n
86
GLU
86
A
GLN
87
n
87
GLN
87
A
GLN
88
n
88
GLN
88
A
THR
89
n
89
THR
89
A
GLU
90
n
90
GLU
90
A
GLN
91
n
91
GLN
91
A
ALA
92
n
92
ALA
92
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
PHE
TYR
67
71
1.58
4
A
A
O
HG1
ALA
THR
42
46
1.47
5
A
A
O
H
PHE
TYR
67
71
1.59
7
A
A
O
H
PHE
TYR
67
71
1.57
10
A
A
O
H
PHE
TYR
67
71
1.58
11
A
A
O
H
PHE
TYR
67
71
1.60
12
A
A
O
H
PHE
TYR
67
71
1.58
14
A
A
O
H
PHE
TYR
67
71
1.58
16
A
A
O
HG1
ALA
THR
42
46
1.48
19
A
A
O
H
PHE
TYR
67
71
1.60
23
A
A
O
H
PHE
TYR
67
71
1.58
24
A
A
O
H
ALA
PHE
77
81
1.56
1
A
PHE
15
-86.04
44.85
1
A
ALA
23
-60.76
-73.19
1
A
SER
37
-91.71
40.00
1
A
ALA
41
-75.42
-70.50
1
A
PRO
53
-47.80
168.30
1
A
GLU
84
-88.52
44.94
2
A
ALA
23
-61.52
-71.63
2
A
THR
36
176.31
167.63
2
A
SER
37
-98.34
36.56
2
A
PRO
53
-47.58
172.32
3
A
LEU
3
-91.70
-69.48
3
A
ALA
9
-62.05
81.95
3
A
GLN
17
-88.91
38.18
3
A
ALA
23
-66.62
-72.66
3
A
SER
37
-87.18
39.41
3
A
PRO
53
-46.45
175.62
3
A
THR
89
-100.58
79.06
4
A
PHE
15
-80.61
46.70
4
A
ALA
23
-68.80
-75.49
4
A
THR
36
179.62
161.95
4
A
SER
37
-97.28
38.51
4
A
LYS
44
-72.99
-70.12
4
A
PRO
53
-53.24
172.76
4
A
GLU
84
-83.86
39.98
4
A
GLN
87
-98.03
-60.76
4
A
THR
89
-111.03
73.02
5
A
ASN
13
-57.72
94.82
5
A
ALA
23
-65.99
-71.40
5
A
SER
37
-86.60
37.33
5
A
PRO
53
-48.07
175.77
5
A
PRO
54
-58.08
-70.28
5
A
GLU
84
-85.16
37.86
6
A
PRO
2
-55.70
94.08
6
A
ALA
23
-69.04
-71.93
6
A
ALA
34
-59.14
-7.40
6
A
SER
37
-89.01
38.19
6
A
PRO
53
-50.91
170.67
6
A
GLU
90
-66.02
-173.07
7
A
ALA
23
-65.33
-73.93
7
A
SER
37
-98.18
38.57
8
A
GLN
14
-95.08
40.36
8
A
ALA
23
-64.06
-72.32
8
A
SER
37
-92.57
38.34
8
A
ALA
41
-79.55
-70.73
8
A
PRO
53
-45.74
166.96
8
A
GLN
85
-65.10
86.03
8
A
THR
89
-113.34
-147.98
9
A
ALA
23
-61.54
-74.56
9
A
THR
36
178.98
166.42
9
A
SER
37
-89.55
37.03
9
A
ALA
41
-79.45
-73.99
9
A
PRO
54
-44.40
-72.58
9
A
GLN
85
-79.38
30.87
10
A
ASN
13
-147.47
53.74
10
A
PHE
15
-92.99
45.11
10
A
ALA
23
-62.28
-74.06
10
A
THR
36
-173.72
145.95
10
A
SER
37
-85.24
37.09
10
A
ALA
41
-75.65
-72.89
10
A
PRO
53
-46.56
168.35
10
A
GLN
85
-93.93
31.52
11
A
ASN
8
-79.98
-71.69
11
A
ALA
9
-69.90
-171.03
11
A
PHE
15
-81.46
40.13
11
A
THR
36
-174.43
147.37
11
A
SER
37
-85.86
39.27
11
A
ALA
41
-73.30
-72.47
11
A
PRO
53
-47.52
173.94
11
A
GLN
87
-88.79
-77.02
11
A
THR
89
-108.91
-152.25
11
A
GLN
91
-72.38
-70.45
12
A
PRO
6
-68.94
-167.65
12
A
SER
37
-94.36
34.41
12
A
PRO
53
-47.18
166.79
12
A
GLU
84
-83.17
32.85
13
A
PHE
15
-93.15
36.58
13
A
SER
37
-94.38
39.94
13
A
ALA
41
-79.05
-73.21
13
A
PRO
53
-47.07
166.14
13
A
GLU
84
-90.22
44.60
14
A
ALA
23
-69.65
-73.37
14
A
SER
37
-86.26
39.86
14
A
ALA
41
-73.79
-70.92
15
A
LEU
3
-80.74
-70.82
15
A
PRO
6
-76.61
-71.00
15
A
ALA
9
-79.80
38.45
15
A
ASN
10
-93.13
32.23
15
A
SER
37
-92.95
39.39
15
A
ALA
41
-76.07
-74.67
15
A
LEU
50
-69.71
6.47
15
A
GLN
85
-86.69
46.79
16
A
PRO
2
-49.90
163.37
16
A
ALA
23
-72.65
-71.48
16
A
ALA
34
-59.32
-8.06
16
A
SER
37
-87.49
37.44
16
A
PRO
53
-47.47
156.50
17
A
ALA
23
-70.15
-71.25
17
A
THR
36
176.48
169.41
17
A
SER
37
-93.08
39.16
17
A
ALA
41
-78.99
-72.95
17
A
LEU
50
-69.99
8.74
17
A
PRO
53
-52.75
179.31
17
A
GLN
85
-65.72
79.67
18
A
ALA
23
-67.94
-71.18
18
A
THR
36
178.07
150.46
18
A
SER
37
-88.83
37.19
18
A
PRO
53
-44.99
162.66
18
A
GLU
84
-80.51
35.82
18
A
GLN
87
-83.88
-70.74
18
A
THR
89
-112.60
-151.57
19
A
ARG
7
-93.42
32.76
19
A
PHE
15
-80.73
31.93
19
A
ALA
23
-54.50
-70.78
19
A
THR
36
176.42
149.35
19
A
SER
37
-85.45
41.44
19
A
ILE
49
-69.68
0.12
19
A
PRO
53
-44.14
169.68
19
A
LEU
61
-65.63
2.11
19
A
GLN
87
-99.83
-65.89
20
A
ASN
13
-93.49
46.82
20
A
ALA
23
-67.84
-72.78
20
A
THR
36
179.09
155.45
20
A
SER
37
-92.08
40.55
20
A
ALA
41
-72.21
-77.23
20
A
PRO
53
-45.20
168.93
20
A
LEU
61
-63.27
2.99
20
A
THR
89
-98.85
51.85
20
A
GLU
90
-67.35
-177.15
21
A
PHE
15
-86.88
31.30
21
A
GLN
17
-77.94
44.11
21
A
ALA
23
-56.87
-72.44
21
A
ALA
34
-59.92
-9.56
21
A
SER
37
-83.20
38.65
21
A
LYS
44
-72.83
-71.69
21
A
PRO
53
-42.40
170.24
21
A
GLU
84
-84.56
33.18
22
A
GLN
17
-67.37
91.26
22
A
ALA
23
-58.71
-75.31
22
A
SER
37
-87.30
37.09
22
A
LEU
50
-66.76
5.12
22
A
PRO
53
-47.53
171.97
22
A
GLN
85
-89.10
35.42
23
A
PHE
15
-81.12
43.89
23
A
SER
37
-86.72
41.88
23
A
ALA
41
-76.93
-72.68
23
A
PRO
53
-47.36
166.83
23
A
GLU
86
-90.21
31.25
23
A
THR
89
-109.39
-151.39
24
A
LEU
3
-80.81
-71.15
24
A
PRO
6
-63.21
97.75
24
A
GLN
17
-62.49
98.22
24
A
ALA
23
-68.94
-72.81
24
A
SER
37
-93.65
38.86
24
A
ALA
41
-74.87
-75.28
24
A
PRO
53
-46.32
162.32
25
A
PRO
6
-78.20
31.81
25
A
ARG
7
-93.11
37.81
25
A
ALA
23
-67.08
-72.53
25
A
SER
37
-94.09
38.56
25
A
ALA
41
-73.50
-71.12
25
A
PRO
53
-44.01
163.10
25
A
PRO
54
-53.61
-70.88
25
A
GLN
87
-90.04
-64.22
25
A
GLU
90
-93.69
32.11
26
A
PHE
15
-84.36
44.55
26
A
GLN
17
-68.24
90.69
26
A
ALA
23
-61.08
-70.86
26
A
THR
36
179.82
153.30
26
A
SER
37
-92.44
37.76
26
A
PRO
53
-45.48
174.41
26
A
THR
89
-105.50
-148.55
27
A
GLN
17
-84.57
35.30
27
A
SER
37
-85.63
36.87
27
A
PRO
53
-49.85
169.53
28
A
ALA
9
-59.09
109.86
28
A
GLN
14
-90.98
37.14
28
A
PHE
15
-90.26
-95.02
28
A
ALA
23
-70.98
-76.45
28
A
THR
36
178.81
168.12
28
A
SER
37
-91.52
37.89
29
A
ASN
12
-83.71
41.85
29
A
ASN
13
-165.83
-29.58
29
A
GLN
14
-91.17
-60.44
29
A
PHE
15
-88.80
35.90
29
A
GLN
17
-90.37
52.42
29
A
ALA
23
-56.90
-70.21
29
A
SER
37
-88.91
39.57
29
A
ALA
41
-77.63
-70.92
29
A
PRO
53
-46.26
176.02
29
A
GLN
85
-73.20
47.99
29
A
GLN
88
-97.45
32.96
30
A
ASN
13
-151.82
-2.36
30
A
THR
36
175.07
159.99
30
A
SER
37
-87.94
42.21
30
A
ALA
41
-77.96
-70.40
SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF POLY(A) BINDING PROTEIN FROM SACCHAROMYCES CEREVISIAE
1
N
N
A
PHE
15
A
PHE
15
HELX_P
A
LYS
19
A
LYS
19
5
1
5
A
GLN
20
A
GLN
20
HELX_P
A
SER
33
A
SER
33
1
2
14
A
ALA
34
A
ALA
34
HELX_P
A
THR
36
A
THR
36
5
3
3
A
ASN
38
A
ASN
38
HELX_P
A
LEU
50
A
LEU
50
1
4
13
A
PRO
59
A
PRO
59
HELX_P
A
GLU
62
A
GLU
62
5
5
4
A
SER
63
A
SER
63
HELX_P
A
GLN
85
A
GLN
85
1
6
23
RNA BINDING PROTEIN
all-helical domain, RNA BINDING PROTEIN
PABP_YEAST
UNP
1
490
P04147
PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ
EQQTEQA
490
576
1IFW
6
92
P04147
A
1
6
92
1
cloning artifact
GLY
1
1IFW
A
P04147
UNP
1
1
cloning artifact
PRO
2
1IFW
A
P04147
UNP
2
1
cloning artifact
LEU
3
1IFW
A
P04147
UNP
3
1
cloning artifact
GLY
4
1IFW
A
P04147
UNP
4
1
cloning artifact
SER
5
1IFW
A
P04147
UNP
5