1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kozlov, G. Siddiqui, N. Coillet-Matillon, S. Sprules, T. Ekiel, I. Gehring, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 277 22822 22828 10.1074/jbc.M201230200 11940585 Solution structure of the orphan PABC domain from Saccharomyces cerevisiae poly(A)-binding protein. 2002 10.2210/pdb1ifw/pdb pdb_00001ifw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 10445.410 POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND NUCLEAR C-TERMINAL DOMAIN (490-576) 1 man polymer POLYADENYLATE TAIL-BINDING PROTEIN no no GPLGSPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYES FKKEQEQQTEQA GPLGSPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYES FKKEQEQQTEQA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample PAB1 4932 Saccharomyces cerevisiae 562 Escherichia coli BL21 GOLD PLASMID PGEX-6P-1 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-07-24 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details RCSB Y RCSB 2001-04-13 REL REL The structure was determined using standard triple-resonance and homonuclear techniques. The N-terminal sequence GPLGS is a cloning artifact. structures with the lowest energy 200 30 2D_NOESY 2D_NOESY 3D_15N-separated_NOESY 3D_13C-separated_NOESY 0.2 6.3 ambient 303 K The structures are based on 972 NOE distance constraints, 69 dihedral angles constraints and 40 hydrogen bonds. simulated annealing 1 lowest energy 3mM protein, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3 90% H2O/10% D2O 3mM protein, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3 100% D2O 3mM protein U-15N, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3 90% H2O/10% D2O 3mM protein U-15N,13C, 50mM phosphate buffer, 0.1M NaCl, 1mM NaN3 100% D2O Bruker collection XwinNMR 2.1 Delsuc processing Gifa 4.31 Wuthrich data analysis XEASY 1.3.13 Brunger structure solution CNS 0.9 Nilges structure solution ARIA 0.9 Brunger refinement CNS 0.9 500 Bruker DRX 750 Varian UNITYPLUS GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A LEU 3 n 3 LEU 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A PRO 6 n 6 PRO 6 A ARG 7 n 7 ARG 7 A ASN 8 n 8 ASN 8 A ALA 9 n 9 ALA 9 A ASN 10 n 10 ASN 10 A ASP 11 n 11 ASP 11 A ASN 12 n 12 ASN 12 A ASN 13 n 13 ASN 13 A GLN 14 n 14 GLN 14 A PHE 15 n 15 PHE 15 A TYR 16 n 16 TYR 16 A GLN 17 n 17 GLN 17 A GLN 18 n 18 GLN 18 A LYS 19 n 19 LYS 19 A GLN 20 n 20 GLN 20 A ARG 21 n 21 ARG 21 A GLN 22 n 22 GLN 22 A ALA 23 n 23 ALA 23 A LEU 24 n 24 LEU 24 A GLY 25 n 25 GLY 25 A GLU 26 n 26 GLU 26 A GLN 27 n 27 GLN 27 A LEU 28 n 28 LEU 28 A TYR 29 n 29 TYR 29 A LYS 30 n 30 LYS 30 A LYS 31 n 31 LYS 31 A VAL 32 n 32 VAL 32 A SER 33 n 33 SER 33 A ALA 34 n 34 ALA 34 A LYS 35 n 35 LYS 35 A THR 36 n 36 THR 36 A SER 37 n 37 SER 37 A ASN 38 n 38 ASN 38 A GLU 39 n 39 GLU 39 A GLU 40 n 40 GLU 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A GLY 43 n 43 GLY 43 A LYS 44 n 44 LYS 44 A ILE 45 n 45 ILE 45 A THR 46 n 46 THR 46 A GLY 47 n 47 GLY 47 A MET 48 n 48 MET 48 A ILE 49 n 49 ILE 49 A LEU 50 n 50 LEU 50 A ASP 51 n 51 ASP 51 A LEU 52 n 52 LEU 52 A PRO 53 n 53 PRO 53 A PRO 54 n 54 PRO 54 A GLN 55 n 55 GLN 55 A GLU 56 n 56 GLU 56 A VAL 57 n 57 VAL 57 A PHE 58 n 58 PHE 58 A PRO 59 n 59 PRO 59 A LEU 60 n 60 LEU 60 A LEU 61 n 61 LEU 61 A GLU 62 n 62 GLU 62 A SER 63 n 63 SER 63 A ASP 64 n 64 ASP 64 A GLU 65 n 65 GLU 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A GLU 68 n 68 GLU 68 A GLN 69 n 69 GLN 69 A HIS 70 n 70 HIS 70 A TYR 71 n 71 TYR 71 A LYS 72 n 72 LYS 72 A GLU 73 n 73 GLU 73 A ALA 74 n 74 ALA 74 A SER 75 n 75 SER 75 A ALA 76 n 76 ALA 76 A ALA 77 n 77 ALA 77 A TYR 78 n 78 TYR 78 A GLU 79 n 79 GLU 79 A SER 80 n 80 SER 80 A PHE 81 n 81 PHE 81 A LYS 82 n 82 LYS 82 A LYS 83 n 83 LYS 83 A GLU 84 n 84 GLU 84 A GLN 85 n 85 GLN 85 A GLU 86 n 86 GLU 86 A GLN 87 n 87 GLN 87 A GLN 88 n 88 GLN 88 A THR 89 n 89 THR 89 A GLU 90 n 90 GLU 90 A GLN 91 n 91 GLN 91 A ALA 92 n 92 ALA 92 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H PHE TYR 67 71 1.58 4 A A O HG1 ALA THR 42 46 1.47 5 A A O H PHE TYR 67 71 1.59 7 A A O H PHE TYR 67 71 1.57 10 A A O H PHE TYR 67 71 1.58 11 A A O H PHE TYR 67 71 1.60 12 A A O H PHE TYR 67 71 1.58 14 A A O H PHE TYR 67 71 1.58 16 A A O HG1 ALA THR 42 46 1.48 19 A A O H PHE TYR 67 71 1.60 23 A A O H PHE TYR 67 71 1.58 24 A A O H ALA PHE 77 81 1.56 1 A PHE 15 -86.04 44.85 1 A ALA 23 -60.76 -73.19 1 A SER 37 -91.71 40.00 1 A ALA 41 -75.42 -70.50 1 A PRO 53 -47.80 168.30 1 A GLU 84 -88.52 44.94 2 A ALA 23 -61.52 -71.63 2 A THR 36 176.31 167.63 2 A SER 37 -98.34 36.56 2 A PRO 53 -47.58 172.32 3 A LEU 3 -91.70 -69.48 3 A ALA 9 -62.05 81.95 3 A GLN 17 -88.91 38.18 3 A ALA 23 -66.62 -72.66 3 A SER 37 -87.18 39.41 3 A PRO 53 -46.45 175.62 3 A THR 89 -100.58 79.06 4 A PHE 15 -80.61 46.70 4 A ALA 23 -68.80 -75.49 4 A THR 36 179.62 161.95 4 A SER 37 -97.28 38.51 4 A LYS 44 -72.99 -70.12 4 A PRO 53 -53.24 172.76 4 A GLU 84 -83.86 39.98 4 A GLN 87 -98.03 -60.76 4 A THR 89 -111.03 73.02 5 A ASN 13 -57.72 94.82 5 A ALA 23 -65.99 -71.40 5 A SER 37 -86.60 37.33 5 A PRO 53 -48.07 175.77 5 A PRO 54 -58.08 -70.28 5 A GLU 84 -85.16 37.86 6 A PRO 2 -55.70 94.08 6 A ALA 23 -69.04 -71.93 6 A ALA 34 -59.14 -7.40 6 A SER 37 -89.01 38.19 6 A PRO 53 -50.91 170.67 6 A GLU 90 -66.02 -173.07 7 A ALA 23 -65.33 -73.93 7 A SER 37 -98.18 38.57 8 A GLN 14 -95.08 40.36 8 A ALA 23 -64.06 -72.32 8 A SER 37 -92.57 38.34 8 A ALA 41 -79.55 -70.73 8 A PRO 53 -45.74 166.96 8 A GLN 85 -65.10 86.03 8 A THR 89 -113.34 -147.98 9 A ALA 23 -61.54 -74.56 9 A THR 36 178.98 166.42 9 A SER 37 -89.55 37.03 9 A ALA 41 -79.45 -73.99 9 A PRO 54 -44.40 -72.58 9 A GLN 85 -79.38 30.87 10 A ASN 13 -147.47 53.74 10 A PHE 15 -92.99 45.11 10 A ALA 23 -62.28 -74.06 10 A THR 36 -173.72 145.95 10 A SER 37 -85.24 37.09 10 A ALA 41 -75.65 -72.89 10 A PRO 53 -46.56 168.35 10 A GLN 85 -93.93 31.52 11 A ASN 8 -79.98 -71.69 11 A ALA 9 -69.90 -171.03 11 A PHE 15 -81.46 40.13 11 A THR 36 -174.43 147.37 11 A SER 37 -85.86 39.27 11 A ALA 41 -73.30 -72.47 11 A PRO 53 -47.52 173.94 11 A GLN 87 -88.79 -77.02 11 A THR 89 -108.91 -152.25 11 A GLN 91 -72.38 -70.45 12 A PRO 6 -68.94 -167.65 12 A SER 37 -94.36 34.41 12 A PRO 53 -47.18 166.79 12 A GLU 84 -83.17 32.85 13 A PHE 15 -93.15 36.58 13 A SER 37 -94.38 39.94 13 A ALA 41 -79.05 -73.21 13 A PRO 53 -47.07 166.14 13 A GLU 84 -90.22 44.60 14 A ALA 23 -69.65 -73.37 14 A SER 37 -86.26 39.86 14 A ALA 41 -73.79 -70.92 15 A LEU 3 -80.74 -70.82 15 A PRO 6 -76.61 -71.00 15 A ALA 9 -79.80 38.45 15 A ASN 10 -93.13 32.23 15 A SER 37 -92.95 39.39 15 A ALA 41 -76.07 -74.67 15 A LEU 50 -69.71 6.47 15 A GLN 85 -86.69 46.79 16 A PRO 2 -49.90 163.37 16 A ALA 23 -72.65 -71.48 16 A ALA 34 -59.32 -8.06 16 A SER 37 -87.49 37.44 16 A PRO 53 -47.47 156.50 17 A ALA 23 -70.15 -71.25 17 A THR 36 176.48 169.41 17 A SER 37 -93.08 39.16 17 A ALA 41 -78.99 -72.95 17 A LEU 50 -69.99 8.74 17 A PRO 53 -52.75 179.31 17 A GLN 85 -65.72 79.67 18 A ALA 23 -67.94 -71.18 18 A THR 36 178.07 150.46 18 A SER 37 -88.83 37.19 18 A PRO 53 -44.99 162.66 18 A GLU 84 -80.51 35.82 18 A GLN 87 -83.88 -70.74 18 A THR 89 -112.60 -151.57 19 A ARG 7 -93.42 32.76 19 A PHE 15 -80.73 31.93 19 A ALA 23 -54.50 -70.78 19 A THR 36 176.42 149.35 19 A SER 37 -85.45 41.44 19 A ILE 49 -69.68 0.12 19 A PRO 53 -44.14 169.68 19 A LEU 61 -65.63 2.11 19 A GLN 87 -99.83 -65.89 20 A ASN 13 -93.49 46.82 20 A ALA 23 -67.84 -72.78 20 A THR 36 179.09 155.45 20 A SER 37 -92.08 40.55 20 A ALA 41 -72.21 -77.23 20 A PRO 53 -45.20 168.93 20 A LEU 61 -63.27 2.99 20 A THR 89 -98.85 51.85 20 A GLU 90 -67.35 -177.15 21 A PHE 15 -86.88 31.30 21 A GLN 17 -77.94 44.11 21 A ALA 23 -56.87 -72.44 21 A ALA 34 -59.92 -9.56 21 A SER 37 -83.20 38.65 21 A LYS 44 -72.83 -71.69 21 A PRO 53 -42.40 170.24 21 A GLU 84 -84.56 33.18 22 A GLN 17 -67.37 91.26 22 A ALA 23 -58.71 -75.31 22 A SER 37 -87.30 37.09 22 A LEU 50 -66.76 5.12 22 A PRO 53 -47.53 171.97 22 A GLN 85 -89.10 35.42 23 A PHE 15 -81.12 43.89 23 A SER 37 -86.72 41.88 23 A ALA 41 -76.93 -72.68 23 A PRO 53 -47.36 166.83 23 A GLU 86 -90.21 31.25 23 A THR 89 -109.39 -151.39 24 A LEU 3 -80.81 -71.15 24 A PRO 6 -63.21 97.75 24 A GLN 17 -62.49 98.22 24 A ALA 23 -68.94 -72.81 24 A SER 37 -93.65 38.86 24 A ALA 41 -74.87 -75.28 24 A PRO 53 -46.32 162.32 25 A PRO 6 -78.20 31.81 25 A ARG 7 -93.11 37.81 25 A ALA 23 -67.08 -72.53 25 A SER 37 -94.09 38.56 25 A ALA 41 -73.50 -71.12 25 A PRO 53 -44.01 163.10 25 A PRO 54 -53.61 -70.88 25 A GLN 87 -90.04 -64.22 25 A GLU 90 -93.69 32.11 26 A PHE 15 -84.36 44.55 26 A GLN 17 -68.24 90.69 26 A ALA 23 -61.08 -70.86 26 A THR 36 179.82 153.30 26 A SER 37 -92.44 37.76 26 A PRO 53 -45.48 174.41 26 A THR 89 -105.50 -148.55 27 A GLN 17 -84.57 35.30 27 A SER 37 -85.63 36.87 27 A PRO 53 -49.85 169.53 28 A ALA 9 -59.09 109.86 28 A GLN 14 -90.98 37.14 28 A PHE 15 -90.26 -95.02 28 A ALA 23 -70.98 -76.45 28 A THR 36 178.81 168.12 28 A SER 37 -91.52 37.89 29 A ASN 12 -83.71 41.85 29 A ASN 13 -165.83 -29.58 29 A GLN 14 -91.17 -60.44 29 A PHE 15 -88.80 35.90 29 A GLN 17 -90.37 52.42 29 A ALA 23 -56.90 -70.21 29 A SER 37 -88.91 39.57 29 A ALA 41 -77.63 -70.92 29 A PRO 53 -46.26 176.02 29 A GLN 85 -73.20 47.99 29 A GLN 88 -97.45 32.96 30 A ASN 13 -151.82 -2.36 30 A THR 36 175.07 159.99 30 A SER 37 -87.94 42.21 30 A ALA 41 -77.96 -70.40 SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF POLY(A) BINDING PROTEIN FROM SACCHAROMYCES CEREVISIAE 1 N N A PHE 15 A PHE 15 HELX_P A LYS 19 A LYS 19 5 1 5 A GLN 20 A GLN 20 HELX_P A SER 33 A SER 33 1 2 14 A ALA 34 A ALA 34 HELX_P A THR 36 A THR 36 5 3 3 A ASN 38 A ASN 38 HELX_P A LEU 50 A LEU 50 1 4 13 A PRO 59 A PRO 59 HELX_P A GLU 62 A GLU 62 5 5 4 A SER 63 A SER 63 HELX_P A GLN 85 A GLN 85 1 6 23 RNA BINDING PROTEIN all-helical domain, RNA BINDING PROTEIN PABP_YEAST UNP 1 490 P04147 PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKEQ EQQTEQA 490 576 1IFW 6 92 P04147 A 1 6 92 1 cloning artifact GLY 1 1IFW A P04147 UNP 1 1 cloning artifact PRO 2 1IFW A P04147 UNP 2 1 cloning artifact LEU 3 1IFW A P04147 UNP 3 1 cloning artifact GLY 4 1IFW A P04147 UNP 4 1 cloning artifact SER 5 1IFW A P04147 UNP 5