0.018847
0.000000
0.007303
0.000000
0.011616
0.000000
0.000000
0.000000
0.017558
0.00000
0.00000
0.00000
Devedjiev, Y.
Symersky, J.
Singh, R.
Brouillette, W.
Muccio, D.
Jedrzejas, M.
Brouillette, C.
DeLucas, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
111.18
90.00
53.060
86.090
61.080
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C21 H27 N6 O15 P2 1
665.418
NICOTINIC ACID ADENINE DINUCLEOTIDE
DEAMIDO-NAD+
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
R
C
N
85
N
O
N
86
R
C
Y
87
N
N
Y
88
N
C
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
P
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
C
N
101
R
C
N
102
N
O
N
103
S
C
N
104
N
O
N
105
R
C
N
106
N
O
N
107
R
C
Y
108
N
N
Y
109
N
C
Y
110
N
N
Y
111
N
C
Y
112
N
N
Y
113
N
C
Y
114
N
C
Y
115
N
N
Y
116
N
C
N
117
N
N
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
N
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
Y
199
N
C
Y
200
N
N
Y
201
N
C
Y
202
N
C
Y
203
N
N
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
S
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
N
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
S
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
R
C
N
366
N
O
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
N
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
N
416
N
O
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
Y
80
N
doub
Y
81
N
sing
Y
82
N
sing
N
83
N
sing
N
84
N
sing
Y
85
N
sing
Y
86
N
doub
N
87
N
sing
N
88
N
sing
Y
89
N
doub
N
90
N
sing
Y
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
N
98
N
sing
Y
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
sing
N
108
N
sing
Y
109
N
doub
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
Y
113
N
doub
Y
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
Y
202
N
sing
Y
203
N
doub
Y
204
N
doub
N
205
N
sing
Y
206
N
sing
N
207
N
sing
Y
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
Y
384
N
sing
Y
385
N
sing
N
386
N
sing
Y
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
806
812
10.1107/S0907444901003523
11375500
Stabilization of active-site loops in NH3-dependent NAD+ synthetase from Bacillus subtilis.
2001
10.2210/pdb1ifx/pdb
pdb_00001ifx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
120
1
mirrors
IMAGE PLATE
1998-06-03
RIGAKU RAXIS IV
Ni filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
30303.994
NH(3)-DEPENDENT NAD(+) SYNTHETASE
6.3.5.1
2
man
polymer
665.418
NICOTINIC ACID ADENINE DINUCLEOTIDE
2
syn
non-polymer
18.015
water
232
nat
water
NAD(+) synthetase
no
no
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
Escherichia
sample
NadE
1423
Bacillus subtilis
562
Escherichia coli
1
2.15
42.67
VAPOR DIFFUSION, HANGING DROP
5.2
sodium acetate buffer, Magnesium chloride, PEG 400, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-06-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1ee1 contains the same protein compexed with one molecule ATP, two molecules Deamido-NAD and one MG2+ ion
1fyd contains the same protein complexed with one molecule AMP, one pyrophosphate ion and one MG2+ ion
RCSB
Y
RCSB
2001-04-13
REL
REL
DND
NICOTINIC ACID ADENINE DINUCLEOTIDE
HOH
water
1EE1
PDB ENTRY 1ee1
PDB
experimental model
DND
8000
2
DND
DND
8000
A
DND
7000
2
DND
DND
7000
B
HOH
6002
3
HOH
HOH
6002
A
HOH
6005
3
HOH
HOH
6005
A
HOH
6006
3
HOH
HOH
6006
A
HOH
6007
3
HOH
HOH
6007
A
HOH
6008
3
HOH
HOH
6008
A
HOH
6009
3
HOH
HOH
6009
A
HOH
6012
3
HOH
HOH
6012
A
HOH
6014
3
HOH
HOH
6014
A
HOH
6015
3
HOH
HOH
6015
A
HOH
6016
3
HOH
HOH
6016
A
HOH
6017
3
HOH
HOH
6017
A
HOH
6018
3
HOH
HOH
6018
A
HOH
6020
3
HOH
HOH
6020
A
HOH
6022
3
HOH
HOH
6022
A
HOH
6024
3
HOH
HOH
6024
A
HOH
6026
3
HOH
HOH
6026
A
HOH
6027
3
HOH
HOH
6027
A
HOH
6033
3
HOH
HOH
6033
A
HOH
6035
3
HOH
HOH
6035
A
HOH
6039
3
HOH
HOH
6039
A
HOH
6040
3
HOH
HOH
6040
A
HOH
6042
3
HOH
HOH
6042
A
HOH
6045
3
HOH
HOH
6045
A
HOH
6047
3
HOH
HOH
6047
A
HOH
6048
3
HOH
HOH
6048
A
HOH
6051
3
HOH
HOH
6051
A
HOH
6052
3
HOH
HOH
6052
A
HOH
6059
3
HOH
HOH
6059
A
HOH
6066
3
HOH
HOH
6066
A
HOH
6067
3
HOH
HOH
6067
A
HOH
6070
3
HOH
HOH
6070
A
HOH
6072
3
HOH
HOH
6072
A
HOH
6073
3
HOH
HOH
6073
A
HOH
6074
3
HOH
HOH
6074
A
HOH
6075
3
HOH
HOH
6075
A
HOH
6081
3
HOH
HOH
6081
A
HOH
6082
3
HOH
HOH
6082
A
HOH
6084
3
HOH
HOH
6084
A
HOH
6086
3
HOH
HOH
6086
A
HOH
6087
3
HOH
HOH
6087
A
HOH
6089
3
HOH
HOH
6089
A
HOH
6094
3
HOH
HOH
6094
A
HOH
6096
3
HOH
HOH
6096
A
HOH
6097
3
HOH
HOH
6097
A
HOH
6100
3
HOH
HOH
6100
A
HOH
6104
3
HOH
HOH
6104
A
HOH
6105
3
HOH
HOH
6105
A
HOH
6109
3
HOH
HOH
6109
A
HOH
6112
3
HOH
HOH
6112
A
HOH
6114
3
HOH
HOH
6114
A
HOH
6115
3
HOH
HOH
6115
A
HOH
6117
3
HOH
HOH
6117
A
HOH
6119
3
HOH
HOH
6119
A
HOH
6120
3
HOH
HOH
6120
A
HOH
6121
3
HOH
HOH
6121
A
HOH
6124
3
HOH
HOH
6124
A
HOH
6126
3
HOH
HOH
6126
A
HOH
6128
3
HOH
HOH
6128
A
HOH
6129
3
HOH
HOH
6129
A
HOH
6130
3
HOH
HOH
6130
A
HOH
6132
3
HOH
HOH
6132
A
HOH
6136
3
HOH
HOH
6136
A
HOH
6137
3
HOH
HOH
6137
A
HOH
6138
3
HOH
HOH
6138
A
HOH
6145
3
HOH
HOH
6145
A
HOH
6146
3
HOH
HOH
6146
A
HOH
6148
3
HOH
HOH
6148
A
HOH
6150
3
HOH
HOH
6150
A
HOH
6151
3
HOH
HOH
6151
A
HOH
6153
3
HOH
HOH
6153
A
HOH
6154
3
HOH
HOH
6154
A
HOH
6155
3
HOH
HOH
6155
A
HOH
6156
3
HOH
HOH
6156
A
HOH
6157
3
HOH
HOH
6157
A
HOH
6161
3
HOH
HOH
6161
A
HOH
6166
3
HOH
HOH
6166
A
HOH
6168
3
HOH
HOH
6168
A
HOH
6169
3
HOH
HOH
6169
A
HOH
6170
3
HOH
HOH
6170
A
HOH
6171
3
HOH
HOH
6171
A
HOH
6172
3
HOH
HOH
6172
A
HOH
6174
3
HOH
HOH
6174
A
HOH
6175
3
HOH
HOH
6175
A
HOH
6180
3
HOH
HOH
6180
A
HOH
6183
3
HOH
HOH
6183
A
HOH
6184
3
HOH
HOH
6184
A
HOH
6185
3
HOH
HOH
6185
A
HOH
6190
3
HOH
HOH
6190
A
HOH
6191
3
HOH
HOH
6191
A
HOH
6195
3
HOH
HOH
6195
A
HOH
6199
3
HOH
HOH
6199
A
HOH
6200
3
HOH
HOH
6200
A
HOH
6202
3
HOH
HOH
6202
A
HOH
6203
3
HOH
HOH
6203
A
HOH
6205
3
HOH
HOH
6205
A
HOH
6206
3
HOH
HOH
6206
A
HOH
6208
3
HOH
HOH
6208
A
HOH
6210
3
HOH
HOH
6210
A
HOH
6212
3
HOH
HOH
6212
A
HOH
6215
3
HOH
HOH
6215
A
HOH
6217
3
HOH
HOH
6217
A
HOH
6218
3
HOH
HOH
6218
A
HOH
6220
3
HOH
HOH
6220
A
HOH
6221
3
HOH
HOH
6221
A
HOH
6222
3
HOH
HOH
6222
A
HOH
6223
3
HOH
HOH
6223
A
HOH
6224
3
HOH
HOH
6224
A
HOH
6226
3
HOH
HOH
6226
A
HOH
6228
3
HOH
HOH
6228
A
HOH
6230
3
HOH
HOH
6230
A
HOH
6234
3
HOH
HOH
6234
A
HOH
6235
3
HOH
HOH
6235
A
HOH
6236
3
HOH
HOH
6236
A
HOH
6238
3
HOH
HOH
6238
A
HOH
6239
3
HOH
HOH
6239
A
HOH
6240
3
HOH
HOH
6240
A
HOH
6241
3
HOH
HOH
6241
A
HOH
6001
3
HOH
HOH
6001
B
HOH
6003
3
HOH
HOH
6003
B
HOH
6004
3
HOH
HOH
6004
B
HOH
6011
3
HOH
HOH
6011
B
HOH
6013
3
HOH
HOH
6013
B
HOH
6019
3
HOH
HOH
6019
B
HOH
6021
3
HOH
HOH
6021
B
HOH
6023
3
HOH
HOH
6023
B
HOH
6025
3
HOH
HOH
6025
B
HOH
6028
3
HOH
HOH
6028
B
HOH
6029
3
HOH
HOH
6029
B
HOH
6030
3
HOH
HOH
6030
B
HOH
6031
3
HOH
HOH
6031
B
HOH
6032
3
HOH
HOH
6032
B
HOH
6034
3
HOH
HOH
6034
B
HOH
6036
3
HOH
HOH
6036
B
HOH
6041
3
HOH
HOH
6041
B
HOH
6043
3
HOH
HOH
6043
B
HOH
6046
3
HOH
HOH
6046
B
HOH
6049
3
HOH
HOH
6049
B
HOH
6053
3
HOH
HOH
6053
B
HOH
6054
3
HOH
HOH
6054
B
HOH
6057
3
HOH
HOH
6057
B
HOH
6058
3
HOH
HOH
6058
B
HOH
6060
3
HOH
HOH
6060
B
HOH
6062
3
HOH
HOH
6062
B
HOH
6063
3
HOH
HOH
6063
B
HOH
6064
3
HOH
HOH
6064
B
HOH
6065
3
HOH
HOH
6065
B
HOH
6068
3
HOH
HOH
6068
B
HOH
6069
3
HOH
HOH
6069
B
HOH
6071
3
HOH
HOH
6071
B
HOH
6076
3
HOH
HOH
6076
B
HOH
6077
3
HOH
HOH
6077
B
HOH
6079
3
HOH
HOH
6079
B
HOH
6080
3
HOH
HOH
6080
B
HOH
6085
3
HOH
HOH
6085
B
HOH
6088
3
HOH
HOH
6088
B
HOH
6090
3
HOH
HOH
6090
B
HOH
6091
3
HOH
HOH
6091
B
HOH
6092
3
HOH
HOH
6092
B
HOH
6093
3
HOH
HOH
6093
B
HOH
6095
3
HOH
HOH
6095
B
HOH
6098
3
HOH
HOH
6098
B
HOH
6099
3
HOH
HOH
6099
B
HOH
6101
3
HOH
HOH
6101
B
HOH
6102
3
HOH
HOH
6102
B
HOH
6103
3
HOH
HOH
6103
B
HOH
6106
3
HOH
HOH
6106
B
HOH
6107
3
HOH
HOH
6107
B
HOH
6108
3
HOH
HOH
6108
B
HOH
6110
3
HOH
HOH
6110
B
HOH
6111
3
HOH
HOH
6111
B
HOH
6113
3
HOH
HOH
6113
B
HOH
6116
3
HOH
HOH
6116
B
HOH
6118
3
HOH
HOH
6118
B
HOH
6122
3
HOH
HOH
6122
B
HOH
6123
3
HOH
HOH
6123
B
HOH
6125
3
HOH
HOH
6125
B
HOH
6127
3
HOH
HOH
6127
B
HOH
6131
3
HOH
HOH
6131
B
HOH
6133
3
HOH
HOH
6133
B
HOH
6134
3
HOH
HOH
6134
B
HOH
6135
3
HOH
HOH
6135
B
HOH
6139
3
HOH
HOH
6139
B
HOH
6140
3
HOH
HOH
6140
B
HOH
6141
3
HOH
HOH
6141
B
HOH
6142
3
HOH
HOH
6142
B
HOH
6143
3
HOH
HOH
6143
B
HOH
6144
3
HOH
HOH
6144
B
HOH
6147
3
HOH
HOH
6147
B
HOH
6149
3
HOH
HOH
6149
B
HOH
6152
3
HOH
HOH
6152
B
HOH
6158
3
HOH
HOH
6158
B
HOH
6159
3
HOH
HOH
6159
B
HOH
6160
3
HOH
HOH
6160
B
HOH
6162
3
HOH
HOH
6162
B
HOH
6163
3
HOH
HOH
6163
B
HOH
6164
3
HOH
HOH
6164
B
HOH
6165
3
HOH
HOH
6165
B
HOH
6167
3
HOH
HOH
6167
B
HOH
6173
3
HOH
HOH
6173
B
HOH
6176
3
HOH
HOH
6176
B
HOH
6177
3
HOH
HOH
6177
B
HOH
6178
3
HOH
HOH
6178
B
HOH
6179
3
HOH
HOH
6179
B
HOH
6181
3
HOH
HOH
6181
B
HOH
6182
3
HOH
HOH
6182
B
HOH
6186
3
HOH
HOH
6186
B
HOH
6187
3
HOH
HOH
6187
B
HOH
6188
3
HOH
HOH
6188
B
HOH
6189
3
HOH
HOH
6189
B
HOH
6192
3
HOH
HOH
6192
B
HOH
6193
3
HOH
HOH
6193
B
HOH
6194
3
HOH
HOH
6194
B
HOH
6196
3
HOH
HOH
6196
B
HOH
6197
3
HOH
HOH
6197
B
HOH
6198
3
HOH
HOH
6198
B
HOH
6201
3
HOH
HOH
6201
B
HOH
6204
3
HOH
HOH
6204
B
HOH
6207
3
HOH
HOH
6207
B
HOH
6209
3
HOH
HOH
6209
B
HOH
6211
3
HOH
HOH
6211
B
HOH
6213
3
HOH
HOH
6213
B
HOH
6214
3
HOH
HOH
6214
B
HOH
6216
3
HOH
HOH
6216
B
HOH
6219
3
HOH
HOH
6219
B
HOH
6225
3
HOH
HOH
6225
B
HOH
6227
3
HOH
HOH
6227
B
HOH
6229
3
HOH
HOH
6229
B
HOH
6231
3
HOH
HOH
6231
B
HOH
6232
3
HOH
HOH
6232
B
HOH
6233
3
HOH
HOH
6233
B
HOH
6237
3
HOH
HOH
6237
B
HOH
6242
3
HOH
HOH
6242
B
SER
1
n
1
SER
1
A
MET
2
n
2
MET
2
A
GLN
3
n
3
GLN
3
A
GLU
4
n
4
GLU
4
A
LYS
5
n
5
LYS
5
A
ILE
6
n
6
ILE
6
A
MET
7
n
7
MET
7
A
ARG
8
n
8
ARG
8
A
GLU
9
n
9
GLU
9
A
LEU
10
n
10
LEU
10
A
HIS
11
n
11
HIS
11
A
VAL
12
n
12
VAL
12
A
LYS
13
n
13
LYS
13
A
PRO
14
n
14
PRO
14
A
SER
15
n
15
SER
15
A
ILE
16
n
16
ILE
16
A
ASP
17
n
17
ASP
17
A
PRO
18
n
18
PRO
18
A
LYS
19
n
19
LYS
19
A
GLN
20
n
20
GLN
20
A
GLU
21
n
21
GLU
21
A
ILE
22
n
22
ILE
22
A
GLU
23
n
23
GLU
23
A
ASP
24
n
24
ASP
24
A
ARG
25
n
25
ARG
25
A
VAL
26
n
26
VAL
26
A
ASN
27
n
27
ASN
27
A
PHE
28
n
28
PHE
28
A
LEU
29
n
29
LEU
29
A
LYS
30
n
30
LYS
30
A
GLN
31
n
31
GLN
31
A
TYR
32
n
32
TYR
32
A
VAL
33
n
33
VAL
33
A
LYS
34
n
34
LYS
34
A
LYS
35
n
35
LYS
35
A
THR
36
n
36
THR
36
A
GLY
37
n
37
GLY
37
A
ALA
38
n
38
ALA
38
A
LYS
39
n
39
LYS
39
A
GLY
40
n
40
GLY
40
A
PHE
41
n
41
PHE
41
A
VAL
42
n
42
VAL
42
A
LEU
43
n
43
LEU
43
A
GLY
44
n
44
GLY
44
A
ILE
45
n
45
ILE
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
GLN
49
n
49
GLN
49
A
ASP
50
n
50
ASP
50
A
SER
51
n
51
SER
51
A
THR
52
n
52
THR
52
A
LEU
53
n
53
LEU
53
A
ALA
54
n
54
ALA
54
A
GLY
55
n
55
GLY
55
A
ARG
56
n
56
ARG
56
A
LEU
57
n
57
LEU
57
A
ALA
58
n
58
ALA
58
A
GLN
59
n
59
GLN
59
A
LEU
60
n
60
LEU
60
A
ALA
61
n
61
ALA
61
A
VAL
62
n
62
VAL
62
A
GLU
63
n
63
GLU
63
A
SER
64
n
64
SER
64
A
ILE
65
n
65
ILE
65
A
ARG
66
n
66
ARG
66
A
GLU
67
n
67
GLU
67
A
GLU
68
n
68
GLU
68
A
GLY
69
n
69
GLY
69
A
GLY
70
n
70
GLY
70
A
ASP
71
n
71
ASP
71
A
ALA
72
n
72
ALA
72
A
GLN
73
n
73
GLN
73
A
PHE
74
n
74
PHE
74
A
ILE
75
n
75
ILE
75
A
ALA
76
n
76
ALA
76
A
VAL
77
n
77
VAL
77
A
ARG
78
n
78
ARG
78
A
LEU
79
n
79
LEU
79
A
PRO
80
n
80
PRO
80
A
HIS
81
n
81
HIS
81
A
GLY
82
n
82
GLY
82
A
n
83
83
A
n
84
84
A
n
85
85
A
n
86
86
A
n
87
87
A
ASP
88
n
88
ASP
88
A
ASP
89
n
89
ASP
89
A
ALA
90
n
90
ALA
90
A
GLN
91
n
91
GLN
91
A
LEU
92
n
92
LEU
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
LYS
95
n
95
LYS
95
A
PHE
96
n
96
PHE
96
A
ILE
97
n
97
ILE
97
A
LYS
98
n
98
LYS
98
A
PRO
99
n
99
PRO
99
A
ASP
100
n
100
ASP
100
A
LYS
101
n
101
LYS
101
A
SER
102
n
102
SER
102
A
TRP
103
n
103
TRP
103
A
LYS
104
n
104
LYS
104
A
PHE
105
n
105
PHE
105
A
ASP
106
n
106
ASP
106
A
ILE
107
n
107
ILE
107
A
LYS
108
n
108
LYS
108
A
SER
109
n
109
SER
109
A
THR
110
n
110
THR
110
A
VAL
111
n
111
VAL
111
A
SER
112
n
112
SER
112
A
ALA
113
n
113
ALA
113
A
PHE
114
n
114
PHE
114
A
SER
115
n
115
SER
115
A
ASP
116
n
116
ASP
116
A
GLN
117
n
117
GLN
117
A
TYR
118
n
118
TYR
118
A
GLN
119
n
119
GLN
119
A
GLN
120
n
120
GLN
120
A
GLU
121
n
121
GLU
121
A
THR
122
n
122
THR
122
A
GLY
123
n
123
GLY
123
A
ASP
124
n
124
ASP
124
A
GLN
125
n
125
GLN
125
A
LEU
126
n
126
LEU
126
A
THR
127
n
127
THR
127
A
ASP
128
n
128
ASP
128
A
PHE
129
n
129
PHE
129
A
ASN
130
n
130
ASN
130
A
LYS
131
n
131
LYS
131
A
GLY
132
n
132
GLY
132
A
ASN
133
n
133
ASN
133
A
VAL
134
n
134
VAL
134
A
LYS
135
n
135
LYS
135
A
ALA
136
n
136
ALA
136
A
ARG
137
n
137
ARG
137
A
THR
138
n
138
THR
138
A
ARG
139
n
139
ARG
139
A
MET
140
n
140
MET
140
A
ILE
141
n
141
ILE
141
A
ALA
142
n
142
ALA
142
A
GLN
143
n
143
GLN
143
A
TYR
144
n
144
TYR
144
A
ALA
145
n
145
ALA
145
A
ILE
146
n
146
ILE
146
A
GLY
147
n
147
GLY
147
A
GLY
148
n
148
GLY
148
A
GLN
149
n
149
GLN
149
A
GLU
150
n
150
GLU
150
A
GLY
151
n
151
GLY
151
A
LEU
152
n
152
LEU
152
A
LEU
153
n
153
LEU
153
A
VAL
154
n
154
VAL
154
A
LEU
155
n
155
LEU
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
ASP
158
n
158
ASP
158
A
HIS
159
n
159
HIS
159
A
ALA
160
n
160
ALA
160
A
ALA
161
n
161
ALA
161
A
GLU
162
n
162
GLU
162
A
ALA
163
n
163
ALA
163
A
VAL
164
n
164
VAL
164
A
THR
165
n
165
THR
165
A
GLY
166
n
166
GLY
166
A
PHE
167
n
167
PHE
167
A
PHE
168
n
168
PHE
168
A
THR
169
n
169
THR
169
A
LYS
170
n
170
LYS
170
A
TYR
171
n
171
TYR
171
A
GLY
172
n
172
GLY
172
A
ASP
173
n
173
ASP
173
A
GLY
174
n
174
GLY
174
A
GLY
175
n
175
GLY
175
A
ALA
176
n
176
ALA
176
A
ASP
177
n
177
ASP
177
A
LEU
178
n
178
LEU
178
A
LEU
179
n
179
LEU
179
A
PRO
180
n
180
PRO
180
A
LEU
181
n
181
LEU
181
A
THR
182
n
182
THR
182
A
GLY
183
n
183
GLY
183
A
LEU
184
n
184
LEU
184
A
THR
185
n
185
THR
185
A
LYS
186
n
186
LYS
186
A
ARG
187
n
187
ARG
187
A
GLN
188
n
188
GLN
188
A
GLY
189
n
189
GLY
189
A
ARG
190
n
190
ARG
190
A
THR
191
n
191
THR
191
A
LEU
192
n
192
LEU
192
A
LEU
193
n
193
LEU
193
A
LYS
194
n
194
LYS
194
A
GLU
195
n
195
GLU
195
A
LEU
196
n
196
LEU
196
A
GLY
197
n
197
GLY
197
A
ALA
198
n
198
ALA
198
A
PRO
199
n
199
PRO
199
A
GLU
200
n
200
GLU
200
A
ARG
201
n
201
ARG
201
A
LEU
202
n
202
LEU
202
A
TYR
203
n
203
TYR
203
A
LEU
204
n
204
LEU
204
A
n
205
205
A
n
206
206
A
n
207
207
A
n
208
208
A
n
209
209
A
n
210
210
A
n
211
211
A
n
212
212
A
n
213
213
A
n
214
214
A
n
215
215
A
n
216
216
A
n
217
217
A
n
218
218
A
n
219
219
A
n
220
220
A
n
221
221
A
n
222
222
A
n
223
223
A
n
224
224
A
n
225
225
A
ILE
226
n
226
ILE
226
A
SER
227
n
227
SER
227
A
TYR
228
n
228
TYR
228
A
ASP
229
n
229
ASP
229
A
GLU
230
n
230
GLU
230
A
ILE
231
n
231
ILE
231
A
ASP
232
n
232
ASP
232
A
ASP
233
n
233
ASP
233
A
TYR
234
n
234
TYR
234
A
LEU
235
n
235
LEU
235
A
GLU
236
n
236
GLU
236
A
GLY
237
n
237
GLY
237
A
LYS
238
n
238
LYS
238
A
GLU
239
n
239
GLU
239
A
VAL
240
n
240
VAL
240
A
SER
241
n
241
SER
241
A
ALA
242
n
242
ALA
242
A
LYS
243
n
243
LYS
243
A
VAL
244
n
244
VAL
244
A
SER
245
n
245
SER
245
A
GLU
246
n
246
GLU
246
A
ALA
247
n
247
ALA
247
A
LEU
248
n
248
LEU
248
A
GLU
249
n
249
GLU
249
A
LYS
250
n
250
LYS
250
A
ARG
251
n
251
ARG
251
A
TYR
252
n
252
TYR
252
A
SER
253
n
253
SER
253
A
MET
254
n
254
MET
254
A
THR
255
n
255
THR
255
A
GLU
256
n
256
GLU
256
A
HIS
257
n
257
HIS
257
A
LYS
258
n
258
LYS
258
A
ARG
259
n
259
ARG
259
A
GLN
260
n
260
GLN
260
A
VAL
261
n
261
VAL
261
A
PRO
262
n
262
PRO
262
A
ALA
263
n
263
ALA
263
A
SER
264
n
264
SER
264
A
MET
265
n
265
MET
265
A
PHE
266
n
266
PHE
266
A
ASP
267
n
267
ASP
267
A
ASP
268
n
268
ASP
268
A
TRP
269
n
269
TRP
269
A
TRP
270
n
270
TRP
270
A
LYS
271
n
271
LYS
271
A
SER
1001
n
1
SER
1001
B
MET
1002
n
2
MET
1002
B
GLN
1003
n
3
GLN
1003
B
GLU
1004
n
4
GLU
1004
B
LYS
1005
n
5
LYS
1005
B
ILE
1006
n
6
ILE
1006
B
MET
1007
n
7
MET
1007
B
ARG
1008
n
8
ARG
1008
B
GLU
1009
n
9
GLU
1009
B
LEU
1010
n
10
LEU
1010
B
HIS
1011
n
11
HIS
1011
B
VAL
1012
n
12
VAL
1012
B
LYS
1013
n
13
LYS
1013
B
PRO
1014
n
14
PRO
1014
B
SER
1015
n
15
SER
1015
B
ILE
1016
n
16
ILE
1016
B
ASP
1017
n
17
ASP
1017
B
PRO
1018
n
18
PRO
1018
B
LYS
1019
n
19
LYS
1019
B
GLN
1020
n
20
GLN
1020
B
GLU
1021
n
21
GLU
1021
B
ILE
1022
n
22
ILE
1022
B
GLU
1023
n
23
GLU
1023
B
ASP
1024
n
24
ASP
1024
B
ARG
1025
n
25
ARG
1025
B
VAL
1026
n
26
VAL
1026
B
ASN
1027
n
27
ASN
1027
B
PHE
1028
n
28
PHE
1028
B
LEU
1029
n
29
LEU
1029
B
LYS
1030
n
30
LYS
1030
B
GLN
1031
n
31
GLN
1031
B
TYR
1032
n
32
TYR
1032
B
VAL
1033
n
33
VAL
1033
B
LYS
1034
n
34
LYS
1034
B
LYS
1035
n
35
LYS
1035
B
THR
1036
n
36
THR
1036
B
GLY
1037
n
37
GLY
1037
B
ALA
1038
n
38
ALA
1038
B
LYS
1039
n
39
LYS
1039
B
GLY
1040
n
40
GLY
1040
B
PHE
1041
n
41
PHE
1041
B
VAL
1042
n
42
VAL
1042
B
LEU
1043
n
43
LEU
1043
B
GLY
1044
n
44
GLY
1044
B
ILE
1045
n
45
ILE
1045
B
SER
1046
n
46
SER
1046
B
GLY
1047
n
47
GLY
1047
B
GLY
1048
n
48
GLY
1048
B
GLN
1049
n
49
GLN
1049
B
ASP
1050
n
50
ASP
1050
B
SER
1051
n
51
SER
1051
B
THR
1052
n
52
THR
1052
B
LEU
1053
n
53
LEU
1053
B
ALA
1054
n
54
ALA
1054
B
GLY
1055
n
55
GLY
1055
B
ARG
1056
n
56
ARG
1056
B
LEU
1057
n
57
LEU
1057
B
ALA
1058
n
58
ALA
1058
B
GLN
1059
n
59
GLN
1059
B
LEU
1060
n
60
LEU
1060
B
ALA
1061
n
61
ALA
1061
B
VAL
1062
n
62
VAL
1062
B
GLU
1063
n
63
GLU
1063
B
SER
1064
n
64
SER
1064
B
ILE
1065
n
65
ILE
1065
B
ARG
1066
n
66
ARG
1066
B
GLU
1067
n
67
GLU
1067
B
GLU
1068
n
68
GLU
1068
B
GLY
1069
n
69
GLY
1069
B
GLY
1070
n
70
GLY
1070
B
ASP
1071
n
71
ASP
1071
B
ALA
1072
n
72
ALA
1072
B
GLN
1073
n
73
GLN
1073
B
PHE
1074
n
74
PHE
1074
B
ILE
1075
n
75
ILE
1075
B
ALA
1076
n
76
ALA
1076
B
VAL
1077
n
77
VAL
1077
B
ARG
1078
n
78
ARG
1078
B
LEU
1079
n
79
LEU
1079
B
PRO
1080
n
80
PRO
1080
B
HIS
1081
n
81
HIS
1081
B
GLY
1082
n
82
GLY
1082
B
n
83
1083
B
n
84
1084
B
n
85
1085
B
n
86
1086
B
n
87
1087
B
ASP
1088
n
88
ASP
1088
B
ASP
1089
n
89
ASP
1089
B
ALA
1090
n
90
ALA
1090
B
GLN
1091
n
91
GLN
1091
B
LEU
1092
n
92
LEU
1092
B
ALA
1093
n
93
ALA
1093
B
LEU
1094
n
94
LEU
1094
B
LYS
1095
n
95
LYS
1095
B
PHE
1096
n
96
PHE
1096
B
ILE
1097
n
97
ILE
1097
B
LYS
1098
n
98
LYS
1098
B
PRO
1099
n
99
PRO
1099
B
ASP
1100
n
100
ASP
1100
B
LYS
1101
n
101
LYS
1101
B
SER
1102
n
102
SER
1102
B
TRP
1103
n
103
TRP
1103
B
LYS
1104
n
104
LYS
1104
B
PHE
1105
n
105
PHE
1105
B
ASP
1106
n
106
ASP
1106
B
ILE
1107
n
107
ILE
1107
B
LYS
1108
n
108
LYS
1108
B
SER
1109
n
109
SER
1109
B
THR
1110
n
110
THR
1110
B
VAL
1111
n
111
VAL
1111
B
SER
1112
n
112
SER
1112
B
ALA
1113
n
113
ALA
1113
B
PHE
1114
n
114
PHE
1114
B
SER
1115
n
115
SER
1115
B
ASP
1116
n
116
ASP
1116
B
GLN
1117
n
117
GLN
1117
B
TYR
1118
n
118
TYR
1118
B
GLN
1119
n
119
GLN
1119
B
GLN
1120
n
120
GLN
1120
B
GLU
1121
n
121
GLU
1121
B
THR
1122
n
122
THR
1122
B
GLY
1123
n
123
GLY
1123
B
ASP
1124
n
124
ASP
1124
B
GLN
1125
n
125
GLN
1125
B
LEU
1126
n
126
LEU
1126
B
THR
1127
n
127
THR
1127
B
ASP
1128
n
128
ASP
1128
B
PHE
1129
n
129
PHE
1129
B
ASN
1130
n
130
ASN
1130
B
LYS
1131
n
131
LYS
1131
B
GLY
1132
n
132
GLY
1132
B
ASN
1133
n
133
ASN
1133
B
VAL
1134
n
134
VAL
1134
B
LYS
1135
n
135
LYS
1135
B
ALA
1136
n
136
ALA
1136
B
ARG
1137
n
137
ARG
1137
B
THR
1138
n
138
THR
1138
B
ARG
1139
n
139
ARG
1139
B
MET
1140
n
140
MET
1140
B
ILE
1141
n
141
ILE
1141
B
ALA
1142
n
142
ALA
1142
B
GLN
1143
n
143
GLN
1143
B
TYR
1144
n
144
TYR
1144
B
ALA
1145
n
145
ALA
1145
B
ILE
1146
n
146
ILE
1146
B
GLY
1147
n
147
GLY
1147
B
GLY
1148
n
148
GLY
1148
B
GLN
1149
n
149
GLN
1149
B
GLU
1150
n
150
GLU
1150
B
GLY
1151
n
151
GLY
1151
B
LEU
1152
n
152
LEU
1152
B
LEU
1153
n
153
LEU
1153
B
VAL
1154
n
154
VAL
1154
B
LEU
1155
n
155
LEU
1155
B
GLY
1156
n
156
GLY
1156
B
THR
1157
n
157
THR
1157
B
ASP
1158
n
158
ASP
1158
B
HIS
1159
n
159
HIS
1159
B
ALA
1160
n
160
ALA
1160
B
ALA
1161
n
161
ALA
1161
B
GLU
1162
n
162
GLU
1162
B
ALA
1163
n
163
ALA
1163
B
VAL
1164
n
164
VAL
1164
B
THR
1165
n
165
THR
1165
B
GLY
1166
n
166
GLY
1166
B
PHE
1167
n
167
PHE
1167
B
PHE
1168
n
168
PHE
1168
B
THR
1169
n
169
THR
1169
B
LYS
1170
n
170
LYS
1170
B
TYR
1171
n
171
TYR
1171
B
GLY
1172
n
172
GLY
1172
B
ASP
1173
n
173
ASP
1173
B
GLY
1174
n
174
GLY
1174
B
GLY
1175
n
175
GLY
1175
B
ALA
1176
n
176
ALA
1176
B
ASP
1177
n
177
ASP
1177
B
LEU
1178
n
178
LEU
1178
B
LEU
1179
n
179
LEU
1179
B
PRO
1180
n
180
PRO
1180
B
LEU
1181
n
181
LEU
1181
B
THR
1182
n
182
THR
1182
B
GLY
1183
n
183
GLY
1183
B
LEU
1184
n
184
LEU
1184
B
THR
1185
n
185
THR
1185
B
LYS
1186
n
186
LYS
1186
B
ARG
1187
n
187
ARG
1187
B
GLN
1188
n
188
GLN
1188
B
GLY
1189
n
189
GLY
1189
B
ARG
1190
n
190
ARG
1190
B
THR
1191
n
191
THR
1191
B
LEU
1192
n
192
LEU
1192
B
LEU
1193
n
193
LEU
1193
B
LYS
1194
n
194
LYS
1194
B
GLU
1195
n
195
GLU
1195
B
LEU
1196
n
196
LEU
1196
B
GLY
1197
n
197
GLY
1197
B
ALA
1198
n
198
ALA
1198
B
PRO
1199
n
199
PRO
1199
B
GLU
1200
n
200
GLU
1200
B
ARG
1201
n
201
ARG
1201
B
LEU
1202
n
202
LEU
1202
B
TYR
1203
n
203
TYR
1203
B
LEU
1204
n
204
LEU
1204
B
n
205
1205
B
n
206
1206
B
n
207
1207
B
n
208
1208
B
n
209
1209
B
n
210
1210
B
n
211
1211
B
n
212
1212
B
n
213
1213
B
n
214
1214
B
n
215
1215
B
n
216
1216
B
n
217
1217
B
n
218
1218
B
n
219
1219
B
n
220
1220
B
n
221
1221
B
n
222
1222
B
n
223
1223
B
n
224
1224
B
n
225
1225
B
ILE
1226
n
226
ILE
1226
B
SER
1227
n
227
SER
1227
B
TYR
1228
n
228
TYR
1228
B
ASP
1229
n
229
ASP
1229
B
GLU
1230
n
230
GLU
1230
B
ILE
1231
n
231
ILE
1231
B
ASP
1232
n
232
ASP
1232
B
ASP
1233
n
233
ASP
1233
B
TYR
1234
n
234
TYR
1234
B
LEU
1235
n
235
LEU
1235
B
GLU
1236
n
236
GLU
1236
B
GLY
1237
n
237
GLY
1237
B
LYS
1238
n
238
LYS
1238
B
GLU
1239
n
239
GLU
1239
B
VAL
1240
n
240
VAL
1240
B
SER
1241
n
241
SER
1241
B
ALA
1242
n
242
ALA
1242
B
LYS
1243
n
243
LYS
1243
B
VAL
1244
n
244
VAL
1244
B
SER
1245
n
245
SER
1245
B
GLU
1246
n
246
GLU
1246
B
ALA
1247
n
247
ALA
1247
B
LEU
1248
n
248
LEU
1248
B
GLU
1249
n
249
GLU
1249
B
LYS
1250
n
250
LYS
1250
B
ARG
1251
n
251
ARG
1251
B
TYR
1252
n
252
TYR
1252
B
SER
1253
n
253
SER
1253
B
MET
1254
n
254
MET
1254
B
THR
1255
n
255
THR
1255
B
GLU
1256
n
256
GLU
1256
B
HIS
1257
n
257
HIS
1257
B
LYS
1258
n
258
LYS
1258
B
ARG
1259
n
259
ARG
1259
B
GLN
1260
n
260
GLN
1260
B
VAL
1261
n
261
VAL
1261
B
PRO
1262
n
262
PRO
1262
B
ALA
1263
n
263
ALA
1263
B
SER
1264
n
264
SER
1264
B
MET
1265
n
265
MET
1265
B
PHE
1266
n
266
PHE
1266
B
ASP
1267
n
267
ASP
1267
B
ASP
1268
n
268
ASP
1268
B
TRP
1269
n
269
TRP
1269
B
TRP
1270
n
270
TRP
1270
B
LYS
1271
n
271
LYS
1271
B
author_and_software_defined_assembly
PISA
2
dimeric
7410
-53
20660
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
101
A
N
LYS
101
A
O
PHE
74
A
O
PHE
74
A
N
ILE
75
A
N
ILE
75
A
O
PHE
41
A
O
PHE
41
A
O
GLY
40
A
O
GLY
40
A
N
LEU
153
A
N
LEU
153
B
N
LYS
1101
B
N
LYS
101
B
O
PHE
1074
B
O
PHE
74
B
N
ILE
1075
B
N
ILE
75
B
O
PHE
1041
B
O
PHE
41
B
N
VAL
1042
B
N
VAL
42
B
O
LEU
1153
B
O
LEU
153
1
A
THR
83
A
THR
83
1
Y
1
A
GLN
84
A
GLN
84
1
Y
1
A
GLN
85
A
GLN
85
1
Y
1
A
ASP
86
A
ASP
86
1
Y
1
A
GLU
87
A
GLU
87
1
Y
1
A
LYS
205
A
LYS
205
1
Y
1
A
GLU
206
A
GLU
206
1
Y
1
A
PRO
207
A
PRO
207
1
Y
1
A
THR
208
A
THR
208
1
Y
1
A
ALA
209
A
ALA
209
1
Y
1
A
ASP
210
A
ASP
210
1
Y
1
A
LEU
211
A
LEU
211
1
Y
1
A
LEU
212
A
LEU
212
1
Y
1
A
ASP
213
A
ASP
213
1
Y
1
A
GLU
214
A
GLU
214
1
Y
1
A
LYS
215
A
LYS
215
1
Y
1
A
PRO
216
A
PRO
216
1
Y
1
A
GLN
217
A
GLN
217
1
Y
1
A
GLN
218
A
GLN
218
1
Y
1
A
SER
219
A
SER
219
1
Y
1
A
ASP
220
A
ASP
220
1
Y
1
A
GLU
221
A
GLU
221
1
Y
1
A
THR
222
A
THR
222
1
Y
1
A
GLU
223
A
GLU
223
1
Y
1
A
LEU
224
A
LEU
224
1
Y
1
A
GLY
225
A
GLY
225
1
Y
1
B
THR
1083
B
THR
83
1
Y
1
B
GLN
1084
B
GLN
84
1
Y
1
B
GLN
1085
B
GLN
85
1
Y
1
B
ASP
1086
B
ASP
86
1
Y
1
B
GLU
1087
B
GLU
87
1
Y
1
B
LYS
1205
B
LYS
205
1
Y
1
B
GLU
1206
B
GLU
206
1
Y
1
B
PRO
1207
B
PRO
207
1
Y
1
B
THR
1208
B
THR
208
1
Y
1
B
ALA
1209
B
ALA
209
1
Y
1
B
ASP
1210
B
ASP
210
1
Y
1
B
LEU
1211
B
LEU
211
1
Y
1
B
LEU
1212
B
LEU
212
1
Y
1
B
ASP
1213
B
ASP
213
1
Y
1
B
GLU
1214
B
GLU
214
1
Y
1
B
LYS
1215
B
LYS
215
1
Y
1
B
PRO
1216
B
PRO
216
1
Y
1
B
GLN
1217
B
GLN
217
1
Y
1
B
GLN
1218
B
GLN
218
1
Y
1
B
SER
1219
B
SER
219
1
Y
1
B
ASP
1220
B
ASP
220
1
Y
1
B
GLU
1221
B
GLU
221
1
Y
1
B
THR
1222
B
THR
222
1
Y
1
B
GLU
1223
B
GLU
223
1
Y
1
B
LEU
1224
B
LEU
224
1
Y
1
B
GLY
1225
B
GLY
225
1
Y
1
A
C4D
DND
8000
PLANAR
1
A
C3D
DND
8000
WRONG HAND
1
B
C4D
DND
7000
PLANAR
1
B
C3D
DND
7000
WRONG HAND
1
B
C3B
DND
7000
PLANAR
1
B
TYR
1144
0.069
SIDE CHAIN
1
14.59
2.30
115.30
129.89
A
A
A
CA
CB
CG
LEU
LEU
LEU
178
178
178
N
1
15.52
2.30
115.30
130.82
B
B
B
CA
CB
CG
LEU
LEU
LEU
1178
1178
1178
N
1
A
HIS
81
-116.21
73.75
1
A
TYR
203
-143.57
-2.56
1
B
HIS
1081
-111.91
77.39
0.2970000
0.1950000
2.25
8.0
1126
24270
23501
99.5
RANDOM
1
2.0
PDB ENTRY 1ee1
Engh, Huber
2.25
8.0
232
4174
88
0
3854
0.012
2.19
0.2970000
0.1770000
2.35
141
2774
8
99
0.2970000
0.1770000
2.47
137
2779
8
99
0.2970000
0.1770000
2.62
142
2793
8
99
0.2970000
0.1770000
2.81
139
2786
8
99
0.2970000
0.1770000
3.08
139
2797
8
99
0.2970000
0.1770000
3.5
147
2791
8
99
0.2970000
0.1770000
4.3
136
2812
8
99
0.2970000
0.1770000
8.0
145
2843
8
99
30.1
2.25
25.0
1IFX
84706
24270
1.0
0.0800000
1
8.9
3.6
99.5
0.3180000
2.25
2.33
3.2
2401
31.8000000
3.2
100.0
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH TWO MOLECULES DEAMIDO-NAD
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
The second part of the biological assembly is generated by the two fold axis
A
SER
1
A
SER
1
HELX_P
A
LEU
10
A
LEU
10
1
1
10
A
ASP
17
A
ASP
17
HELX_P
A
GLY
37
A
GLY
37
1
2
21
A
GLY
48
A
GLY
48
HELX_P
A
GLU
67
A
GLU
67
1
3
20
A
ASP
88
A
ASP
88
HELX_P
A
LYS
98
A
LYS
98
1
4
11
A
ILE
107
A
ILE
107
HELX_P
A
GLY
123
A
GLY
123
1
5
17
A
THR
127
A
THR
127
HELX_P
A
GLY
151
A
GLY
151
1
6
25
A
HIS
159
A
HIS
159
HELX_P
A
VAL
164
A
VAL
164
1
7
6
A
THR
185
A
THR
185
HELX_P
A
LEU
196
A
LEU
196
1
8
12
A
PRO
199
A
PRO
199
HELX_P
A
TYR
203
A
TYR
203
5
9
5
A
SER
227
A
SER
227
HELX_P
A
GLU
236
A
GLU
236
1
10
10
A
SER
241
A
SER
241
HELX_P
A
THR
255
A
THR
255
1
11
15
A
GLU
256
A
GLU
256
HELX_P
A
GLN
260
A
GLN
260
5
12
5
B
SER
1001
B
SER
1
HELX_P
B
HIS
1011
B
HIS
11
1
13
11
B
ASP
1017
B
ASP
17
HELX_P
B
GLY
1037
B
GLY
37
1
14
21
B
GLY
1048
B
GLY
48
HELX_P
B
GLU
1068
B
GLU
68
1
15
21
B
ASP
1088
B
ASP
88
HELX_P
B
LYS
1098
B
LYS
98
1
16
11
B
ILE
1107
B
ILE
107
HELX_P
B
GLY
1123
B
GLY
123
1
17
17
B
THR
1127
B
THR
127
HELX_P
B
GLY
1151
B
GLY
151
1
18
25
B
HIS
1159
B
HIS
159
HELX_P
B
THR
1165
B
THR
165
1
19
7
B
THR
1185
B
THR
185
HELX_P
B
LEU
1196
B
LEU
196
1
20
12
B
PRO
1199
B
PRO
199
HELX_P
B
LEU
1204
B
LEU
204
1
21
6
B
SER
1227
B
SER
227
HELX_P
B
GLU
1236
B
GLU
236
1
22
10
B
SER
1241
B
SER
241
HELX_P
B
GLU
1256
B
GLU
256
1
23
16
B
HIS
1257
B
HIS
257
HELX_P
B
GLN
1260
B
GLN
260
5
24
4
LIGASE
LYASE, AMIDOTRANSFERASE, NH3 DEPENDENT, ATP, PYROPHOSPHATASE, LIGASE
NADE_BACSU
UNP
1
1
P08164
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
1
271
1IFX
1
271
P08164
A
1
1
271
1
271
1IFX
1001
1271
P08164
B
1
1
271
4
4
parallel
parallel
parallel
parallel
parallel
parallel
A
LYS
101
A
LYS
101
A
LYS
104
A
LYS
104
A
GLN
73
A
GLN
73
A
ARG
78
A
ARG
78
A
GLY
40
A
GLY
40
A
ILE
45
A
ILE
45
A
LEU
153
A
LEU
153
A
VAL
154
A
VAL
154
B
LYS
1101
B
LYS
101
B
LYS
1104
B
LYS
104
B
GLN
1073
B
GLN
73
B
ARG
1078
B
ARG
78
B
GLY
1040
B
GLY
40
B
GLY
1044
B
GLY
44
B
LEU
1153
B
LEU
153
B
VAL
1154
B
VAL
154
BINDING SITE FOR RESIDUE DND B 7000
B
DND
7000
Software
18
BINDING SITE FOR RESIDUE DND A 8000
A
DND
8000
Software
17
A
TYR
32
A
TYR
32
18
1_555
A
THR
36
A
THR
36
18
1_555
A
TYR
144
A
TYR
144
18
1_555
A
LEU
153
A
LEU
153
18
1_555
A
ASP
177
A
ASP
177
18
1_555
B
PHE
1129
B
PHE
129
18
1_555
B
ASN
1133
B
ASN
133
18
1_555
B
ARG
1137
B
ARG
137
18
1_555
B
PHE
1167
B
PHE
167
18
1_555
B
PHE
1168
B
PHE
168
18
1_555
B
THR
1169
B
THR
169
18
1_555
B
LYS
1170
B
LYS
170
18
1_555
B
ASP
1173
B
ASP
173
18
1_555
B
HIS
1257
B
HIS
257
18
1_555
B
LYS
1258
B
LYS
258
18
1_555
B
HOH
6091
F
HOH
18
1_555
B
HOH
6181
F
HOH
18
1_555
B
HOH
6214
F
HOH
18
1_555
A
PHE
129
A
PHE
129
17
1_555
A
ASN
133
A
ASN
133
17
1_555
A
ARG
137
A
ARG
137
17
1_555
A
PHE
167
A
PHE
167
17
1_555
A
PHE
168
A
PHE
168
17
1_555
A
THR
169
A
THR
169
17
1_555
A
LYS
170
A
LYS
170
17
1_555
A
HIS
257
A
HIS
257
17
1_555
A
LYS
258
A
LYS
258
17
1_555
A
HOH
6022
E
HOH
17
1_555
A
HOH
6171
E
HOH
17
1_555
A
HOH
6215
E
HOH
17
1_555
B
TYR
1032
B
TYR
32
17
1_555
B
THR
1036
B
THR
36
17
1_555
B
TYR
1144
B
TYR
144
17
1_555
B
LEU
1153
B
LEU
153
17
1_555
B
ASP
1177
B
ASP
177
17
1_555
4
P 1 21 1