0.029762 0.000000 0.000000 0.000000 0.016404 0.000000 0.000000 0.000000 0.012151 0.00000 0.00000 0.00000 Hovde, S. Abate-Shen, C. Geiger, J.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 33.600 60.960 82.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N O N 59 N P N 60 N O N 61 N O N 62 N O N 63 N C N 64 R C N 65 N O N 66 S C N 67 N O N 68 N C N 69 R C Y 70 N N Y 71 N C Y 72 N N Y 73 N C Y 74 N C N 75 N N Y 76 N N Y 77 N C Y 78 N N Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N O N 95 N P N 96 N O N 97 N O N 98 N O N 99 N C N 100 R C N 101 N O N 102 S C N 103 N O N 104 N C N 105 R C N 106 N N N 107 N C N 108 N O N 109 N N N 110 N C N 111 N N N 112 N C N 113 N C N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N O N 129 N P N 130 N O N 131 N O N 132 N O N 133 N C N 134 R C N 135 N O N 136 S C N 137 N O N 138 N C N 139 R C Y 140 N N Y 141 N C Y 142 N N Y 143 N C N 144 N C N 145 N O N 146 N N N 147 N C N 148 N N N 149 N N Y 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N P N 167 N O N 168 N O N 169 N O N 170 N C N 171 R C N 172 N O N 173 S C N 174 N O N 175 N C N 176 R C N 177 N N N 178 N C N 179 N O N 180 N N N 181 N C N 182 N O N 183 N C N 184 N C N 185 N C N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N O N 209 N N N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N O N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N O N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 S C N 248 N C N 249 N C N 250 N C N 251 N O N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N C N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N C N 295 N N N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N C N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N O N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 R C N 371 N O N 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C Y 388 N C Y 389 N C Y 390 N C Y 391 N N Y 392 N C Y 393 N C Y 394 N C Y 395 N C Y 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C Y 420 N C N 421 N O N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C N 439 N C N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing Y 78 N sing Y 79 N sing Y 80 N doub N 81 N sing Y 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing N 88 N sing Y 89 N sing Y 90 N doub N 91 N sing Y 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing Y 151 N sing Y 152 N sing Y 153 N doub N 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing Y 320 N doub Y 321 N sing Y 322 N sing N 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N sing Y 398 N doub N 399 N sing Y 400 N doub N 401 N sing Y 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing Y 417 N doub Y 418 N sing Y 419 N sing N 420 N sing Y 421 N doub N 422 N sing Y 423 N doub N 424 N sing Y 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing US Biochemistry BICHAW 0033 0006-2960 40 12013 12021 10.1021/bi0108148 11580277 Crystal structure of the Msx-1 homeodomain/DNA complex 2001 10.2210/pdb1ig7/pdb pdb_00001ig7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123 1 Osmic confocal maxflux mirrors IMAGE PLATE 1997-05-20 RIGAKU RAXIS IIC Ni Filter SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 3999.636 5'-D(*CP*AP*CP*TP*AP*AP*TP*TP*GP*AP*AP*GP*G)-3' 1 syn polymer 4848.165 5'-D(P*TP*CP*CP*TP*TP*CP*AP*AP*TP*TP*AP*GP*TP*GP*AP*C)-3' 1 syn polymer 6939.079 Homeotic protein Msx-1 Homeodomain (157-233) 1 man polymer 18.015 water 153 nat water no no (DC)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DG)(DA)(DA)(DG)(DG) CACTAATTGAAGG B polydeoxyribonucleotide no no (DT)(DC)(DC)(DT)(DT)(DC)(DA)(DA)(DT)(DT)(DA)(DG)(DT)(DG)(DA)(DC) TCCTTCAATTAGTGAC C polydeoxyribonucleotide no no RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli plasmid pDs56-Msx-1(157-233) 1 2.34 55 VAPOR DIFFUSION, HANGING DROP 4.6 PEG 4000, Sodium Acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 PEG 4000 1 Sodium Acetate 1 -2.633 1 19 B 4 C 30 -4.450 B_DC4:DG30_C 1 -15.700 0.749 -0.109 -0.830 4.615 1 20 B 5 C 29 -0.566 B_DA5:DT29_C 2 -3.912 -0.071 -0.023 -0.332 8.901 1 19 B 6 C 28 2.199 B_DC6:DG28_C 3 -9.032 0.302 -0.076 -0.491 1.219 1 20 B 7 C 27 11.309 B_DT7:DA27_C 4 -4.151 -0.314 -0.103 -0.239 -1.811 1 20 B 8 C 26 5.199 B_DA8:DT26_C 5 -13.524 0.340 -0.522 -0.156 -1.087 1 20 B 9 C 25 9.270 B_DA9:DT25_C 6 -12.364 0.200 0.020 -0.263 -5.290 1 20 B 10 C 24 4.354 B_DT10:DA24_C 7 -12.827 -0.209 -0.024 -0.356 -5.349 1 20 B 11 C 23 3.594 B_DT11:DA23_C 8 -6.502 -0.024 0.276 -0.105 -0.240 1 19 B 12 C 22 -2.989 B_DG12:DC22_C 9 -6.308 -0.135 -0.427 -0.274 1.980 1 20 B 13 C 21 2.708 B_DA13:DT21_C 10 -10.903 0.238 -0.181 -0.243 8.931 1 20 B 14 C 20 -3.680 B_DA14:DT20_C 11 -13.101 0.636 0.207 -0.321 3.925 1 19 B 15 C 19 0.309 B_DG15:DC19_C 12 -13.885 -0.113 0.328 -0.336 2.653 1 19 B 16 C 18 -4.019 B_DG16:DC18_C 13 -7.298 -0.671 0.143 -0.739 2.953 30.222 B B 4 5 10.125 C C 30 29 3.098 5.251 -0.705 -0.335 BB_DC4DA5:DT29DG30_CC 1 1.661 -3.203 29.727 -1.636 1.666 3.156 31.163 B B 5 6 6.825 C C 29 28 3.208 3.658 0.451 -0.360 BB_DA5DC6:DG28DT29_CC 2 0.782 -1.458 30.943 -1.351 -0.694 3.450 35.853 B B 6 7 19.296 C C 28 27 3.459 11.647 1.405 0.083 BB_DC6DT7:DA27DG28_CC 3 4.380 -7.257 33.691 -1.688 -1.596 3.457 39.394 B B 7 8 10.452 C C 27 26 3.351 7.010 -1.365 0.736 BB_DT7DA8:DT26DA27_CC 4 -0.908 1.354 38.779 0.222 1.913 2.974 35.185 B B 8 9 8.677 C C 26 25 3.109 5.210 0.144 -0.368 BB_DA8DA9:DT25DT26_CC 5 -5.011 8.346 34.457 -1.339 -0.941 3.319 31.911 B B 9 10 2.221 C C 25 24 3.314 1.220 -0.800 -0.936 BB_DA9DT10:DA24DT25_CC 6 -2.016 3.671 31.826 -1.927 1.084 3.312 29.064 B B 10 11 3.922 C C 24 23 3.335 1.963 -0.224 -0.300 BB_DT10DT11:DA23DA24_CC 7 -3.306 6.606 28.814 -1.037 -0.293 2.957 32.572 B B 11 12 18.789 C C 23 22 3.172 10.320 0.104 -0.111 BB_DT11DG12:DC22DA23_CC 8 5.212 -9.488 30.503 -1.943 0.696 3.238 40.117 B B 12 13 14.861 C C 22 21 3.268 10.052 -0.349 0.217 BB_DG12DA13:DT21DC22_CC 9 -6.380 9.432 38.379 -0.852 -0.232 3.067 38.968 B B 13 14 8.709 C C 21 20 3.082 5.783 -0.478 -0.093 BB_DA13DA14:DT20DT21_CC 10 -3.541 5.333 38.397 -0.802 0.311 3.236 32.456 B B 14 15 7.192 C C 20 19 3.358 4.010 0.438 -0.753 BB_DA14DG15:DC19DT20_CC 11 -0.501 0.899 32.210 -2.060 -0.872 2.604 27.135 B B 15 16 17.960 C C 19 18 3.170 8.295 -0.384 -1.346 BB_DG15DG16:DC18DC19_CC 12 0.927 -2.007 25.842 -4.763 1.030 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 2001-04-23 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2001-04-17 REL HOH water Even-Skipped Homeodomain/DNA complex Other experimental model WAT 161 4 HOH HOH 161 B WAT 162 4 HOH HOH 162 B WAT 168 4 HOH HOH 168 B WAT 170 4 HOH HOH 170 B WAT 183 4 HOH HOH 183 B WAT 188 4 HOH HOH 188 B WAT 191 4 HOH HOH 191 B WAT 194 4 HOH HOH 194 B WAT 195 4 HOH HOH 195 B WAT 202 4 HOH HOH 202 B WAT 203 4 HOH HOH 203 B WAT 206 4 HOH HOH 206 B WAT 213 4 HOH HOH 213 B WAT 215 4 HOH HOH 215 B WAT 218 4 HOH HOH 218 B WAT 220 4 HOH HOH 220 B WAT 226 4 HOH HOH 226 B WAT 234 4 HOH HOH 234 B WAT 248 4 HOH HOH 248 B WAT 255 4 HOH HOH 255 B WAT 289 4 HOH HOH 289 B WAT 296 4 HOH HOH 296 B WAT 299 4 HOH HOH 299 B WAT 305 4 HOH HOH 305 B WAT 314 4 HOH HOH 314 B WAT 332 4 HOH HOH 332 B WAT 357 4 HOH HOH 357 B WAT 359 4 HOH HOH 359 B WAT 360 4 HOH HOH 360 B WAT 383 4 HOH HOH 383 B WAT 384 4 HOH HOH 384 B WAT 385 4 HOH HOH 385 B WAT 386 4 HOH HOH 386 B WAT 160 4 HOH HOH 160 C WAT 163 4 HOH HOH 163 C WAT 169 4 HOH HOH 169 C WAT 173 4 HOH HOH 173 C WAT 174 4 HOH HOH 174 C WAT 175 4 HOH HOH 175 C WAT 179 4 HOH HOH 179 C WAT 185 4 HOH HOH 185 C WAT 189 4 HOH HOH 189 C WAT 190 4 HOH HOH 190 C WAT 205 4 HOH HOH 205 C WAT 217 4 HOH HOH 217 C WAT 224 4 HOH HOH 224 C WAT 233 4 HOH HOH 233 C WAT 236 4 HOH HOH 236 C WAT 237 4 HOH HOH 237 C WAT 240 4 HOH HOH 240 C WAT 244 4 HOH HOH 244 C WAT 246 4 HOH HOH 246 C WAT 252 4 HOH HOH 252 C WAT 256 4 HOH HOH 256 C WAT 257 4 HOH HOH 257 C WAT 259 4 HOH HOH 259 C WAT 260 4 HOH HOH 260 C WAT 265 4 HOH HOH 265 C WAT 275 4 HOH HOH 275 C WAT 277 4 HOH HOH 277 C WAT 278 4 HOH HOH 278 C WAT 279 4 HOH HOH 279 C WAT 280 4 HOH HOH 280 C WAT 282 4 HOH HOH 282 C WAT 290 4 HOH HOH 290 C WAT 304 4 HOH HOH 304 C WAT 330 4 HOH HOH 330 C WAT 331 4 HOH HOH 331 C WAT 338 4 HOH HOH 338 C WAT 355 4 HOH HOH 355 C WAT 364 4 HOH HOH 364 C WAT 378 4 HOH HOH 378 C WAT 379 4 HOH HOH 379 C WAT 380 4 HOH HOH 380 C WAT 382 4 HOH HOH 382 C WAT 389 4 HOH HOH 389 C WAT 390 4 HOH HOH 390 C WAT 164 4 HOH HOH 164 A WAT 165 4 HOH HOH 165 A WAT 166 4 HOH HOH 166 A WAT 167 4 HOH HOH 167 A WAT 171 4 HOH HOH 171 A WAT 172 4 HOH HOH 172 A WAT 176 4 HOH HOH 176 A WAT 177 4 HOH HOH 177 A WAT 178 4 HOH HOH 178 A WAT 180 4 HOH HOH 180 A WAT 181 4 HOH HOH 181 A WAT 182 4 HOH HOH 182 A WAT 184 4 HOH HOH 184 A WAT 186 4 HOH HOH 186 A WAT 187 4 HOH HOH 187 A WAT 192 4 HOH HOH 192 A WAT 193 4 HOH HOH 193 A WAT 196 4 HOH HOH 196 A WAT 197 4 HOH HOH 197 A WAT 198 4 HOH HOH 198 A WAT 200 4 HOH HOH 200 A WAT 201 4 HOH HOH 201 A WAT 204 4 HOH HOH 204 A WAT 207 4 HOH HOH 207 A WAT 208 4 HOH HOH 208 A WAT 209 4 HOH HOH 209 A WAT 210 4 HOH HOH 210 A WAT 211 4 HOH HOH 211 A WAT 212 4 HOH HOH 212 A WAT 214 4 HOH HOH 214 A WAT 216 4 HOH HOH 216 A WAT 219 4 HOH HOH 219 A WAT 221 4 HOH HOH 221 A WAT 225 4 HOH HOH 225 A WAT 229 4 HOH HOH 229 A WAT 235 4 HOH HOH 235 A WAT 241 4 HOH HOH 241 A WAT 243 4 HOH HOH 243 A WAT 247 4 HOH HOH 247 A WAT 249 4 HOH HOH 249 A WAT 250 4 HOH HOH 250 A WAT 253 4 HOH HOH 253 A WAT 254 4 HOH HOH 254 A WAT 258 4 HOH HOH 258 A WAT 262 4 HOH HOH 262 A WAT 263 4 HOH HOH 263 A WAT 264 4 HOH HOH 264 A WAT 266 4 HOH HOH 266 A WAT 267 4 HOH HOH 267 A WAT 269 4 HOH HOH 269 A WAT 270 4 HOH HOH 270 A WAT 271 4 HOH HOH 271 A WAT 272 4 HOH HOH 272 A WAT 276 4 HOH HOH 276 A WAT 283 4 HOH HOH 283 A WAT 284 4 HOH HOH 284 A WAT 285 4 HOH HOH 285 A WAT 288 4 HOH HOH 288 A WAT 291 4 HOH HOH 291 A WAT 297 4 HOH HOH 297 A WAT 302 4 HOH HOH 302 A WAT 309 4 HOH HOH 309 A WAT 310 4 HOH HOH 310 A WAT 312 4 HOH HOH 312 A WAT 318 4 HOH HOH 318 A WAT 325 4 HOH HOH 325 A WAT 326 4 HOH HOH 326 A WAT 352 4 HOH HOH 352 A WAT 353 4 HOH HOH 353 A WAT 356 4 HOH HOH 356 A WAT 358 4 HOH HOH 358 A WAT 361 4 HOH HOH 361 A WAT 363 4 HOH HOH 363 A WAT 381 4 HOH HOH 381 A WAT 387 4 HOH HOH 387 A WAT 388 4 HOH HOH 388 A CYT 4 n 1 DC 4 B ADE 5 n 2 DA 5 B CYT 6 n 3 DC 6 B THY 7 n 4 DT 7 B ADE 8 n 5 DA 8 B ADE 9 n 6 DA 9 B THY 10 n 7 DT 10 B THY 11 n 8 DT 11 B GUA 12 n 9 DG 12 B ADE 13 n 10 DA 13 B ADE 14 n 11 DA 14 B GUA 15 n 12 DG 15 B GUA 16 n 13 DG 16 B THY 17 n 1 DT 17 C CYT 18 n 2 DC 18 C CYT 19 n 3 DC 19 C THY 20 n 4 DT 20 C THY 21 n 5 DT 21 C CYT 22 n 6 DC 22 C ADE 23 n 7 DA 23 C ADE 24 n 8 DA 24 C THY 25 n 9 DT 25 C THY 26 n 10 DT 26 C ADE 27 n 11 DA 27 C GUA 28 n 12 DG 28 C THY 29 n 13 DT 29 C GUA 30 n 14 DG 30 C ADE 31 n 15 DA 31 C CYT 32 n 16 DC 32 C ARG 102 n 1 ARG 102 A LYS 103 n 2 LYS 103 A PRO 104 n 3 PRO 104 A ARG 105 n 4 ARG 105 A THR 106 n 5 THR 106 A PRO 107 n 6 PRO 107 A PHE 108 n 7 PHE 108 A THR 109 n 8 THR 109 A THR 110 n 9 THR 110 A ALA 111 n 10 ALA 111 A GLN 112 n 11 GLN 112 A LEU 113 n 12 LEU 113 A LEU 114 n 13 LEU 114 A ALA 115 n 14 ALA 115 A LEU 116 n 15 LEU 116 A GLU 117 n 16 GLU 117 A ARG 118 n 17 ARG 118 A LYS 119 n 18 LYS 119 A PHE 120 n 19 PHE 120 A ARG 121 n 20 ARG 121 A GLN 122 n 21 GLN 122 A LYS 123 n 22 LYS 123 A GLN 124 n 23 GLN 124 A TYR 125 n 24 TYR 125 A LEU 126 n 25 LEU 126 A SER 127 n 26 SER 127 A ILE 128 n 27 ILE 128 A ALA 129 n 28 ALA 129 A GLU 130 n 29 GLU 130 A ARG 131 n 30 ARG 131 A ALA 132 n 31 ALA 132 A GLU 133 n 32 GLU 133 A PHE 134 n 33 PHE 134 A SER 135 n 34 SER 135 A SER 136 n 35 SER 136 A SER 137 n 36 SER 137 A LEU 138 n 37 LEU 138 A SER 139 n 38 SER 139 A LEU 140 n 39 LEU 140 A THR 141 n 40 THR 141 A GLU 142 n 41 GLU 142 A THR 143 n 42 THR 143 A GLN 144 n 43 GLN 144 A VAL 145 n 44 VAL 145 A LYS 146 n 45 LYS 146 A ILE 147 n 46 ILE 147 A TRP 148 n 47 TRP 148 A PHE 149 n 48 PHE 149 A GLN 150 n 49 GLN 150 A ASN 151 n 50 ASN 151 A ARG 152 n 51 ARG 152 A ARG 153 n 52 ARG 153 A ALA 154 n 53 ALA 154 A LYS 155 n 54 LYS 155 A ALA 156 n 55 ALA 156 A LYS 157 n 56 LYS 157 A ARG 158 n 57 ARG 158 A LEU 159 n 58 LEU 159 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG ARG 121 C CG ARG 20 1 Y 1 A CD ARG 121 C CD ARG 20 1 Y 1 A NE ARG 121 C NE ARG 20 1 Y 1 A CZ ARG 121 C CZ ARG 20 1 Y 1 A NH1 ARG 121 C NH1 ARG 20 1 Y 1 A NH2 ARG 121 C NH2 ARG 20 1 Y 1 A CG GLN 122 C CG GLN 21 1 Y 1 A CD GLN 122 C CD GLN 21 1 Y 1 A OE1 GLN 122 C OE1 GLN 21 1 Y 1 A NE2 GLN 122 C NE2 GLN 21 1 Y 1 A CG LYS 157 C CG LYS 56 1 Y 1 A CD LYS 157 C CD LYS 56 1 Y 1 A CE LYS 157 C CE LYS 56 1 Y 1 A NZ LYS 157 C NZ LYS 56 1 Y 1 C C O O HOH HOH 169 330 1.99 1 C C OP2 O DT HOH 25 240 2.14 1 C C C4' O DC HOH 32 378 2.16 1 C DT 17 0.071 SIDE CHAIN 1 C DC 18 0.079 SIDE CHAIN 1 C DC 19 0.108 SIDE CHAIN 1 -5.80 0.90 105.70 99.90 B B B O5' P OP2 DA DA DA 9 9 9 N 1 -5.50 0.80 102.40 96.90 B B B C3' C2' C1' DG DG DG 12 12 12 N 1 -10.79 0.90 105.70 94.91 C C C O5' P OP1 DT DT DT 17 17 17 N 1 7.57 1.10 110.50 118.07 C C C O3' P OP2 DT DG DG 29 30 30 Y 1 2.06 0.30 108.30 110.36 C C C O4' C1' N9 DG DG DG 30 30 30 N 1 -11.14 1.80 114.10 102.96 C C C C5' C4' C3' DA DA DA 31 31 31 N 1 -3.45 0.50 120.30 116.85 A A A NE CZ NH2 ARG ARG ARG 118 118 118 N 1 -13.21 2.10 111.80 98.59 A A A CG CD NE ARG ARG ARG 153 153 153 N 1 8.57 1.40 123.60 132.17 A A A CD NE CZ ARG ARG ARG 153 153 153 N 1 5.77 0.50 120.30 126.07 A A A NE CZ NH1 ARG ARG ARG 153 153 153 N 1 -9.88 0.50 120.30 110.42 A A A NE CZ NH2 ARG ARG ARG 153 153 153 N 1 B B C2 O2 DT DT 10 10 -0.076 0.008 1.220 1.144 N 1 B B O3' C3' DG DG 12 12 -0.036 0.006 1.419 1.383 N 1 B B C2 N3 DG DG 16 16 0.051 0.008 1.323 1.374 N 1 C C O3' C3' DC DC 19 19 -0.038 0.006 1.419 1.381 N 1 C C O3' C3' DT DT 21 21 -0.042 0.006 1.419 1.377 N 1 C C C5 C6 DA DA 24 24 0.055 0.009 1.406 1.461 N 1 A A CB CG GLU GLU 133 133 -0.135 0.019 1.517 1.382 N PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP 38.3 18.91 0.00 0.00 -5.33 0.00 -13.58 0.274 0.009 0.205 0.2119 0.205 2.20 21.25 836 10391 8007 10.4 88.4 RANDOM 412425.51 0.00 1 RESTRAINED THROUGHOUT 2.0 2.0 MOLECULAR REPLACEMENT Even-Skipped Homeodomain/DNA complex CNS FLAT MODEL 48.12 0.351 0.34 0.25 5.00 0.38 0.25 2.20 21.25 153 1219 0 590 476 0.026 2.5 20.0 2.01 1.09 1.50 1.71 2.00 1.49 2.00 2.29 2.50 0.352 0.033 0.261 2.34 113 1004 6 10.1 75.6 27.2 2.2 40.0 1IG7 130352 11914 -1.0 -3.0 0.062 1 17.3 11 98.9 0.542 2.00 2.07 2.6 97.7 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 Msx-1 Homeodomain/DNA Complex Structure 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A THR 109 C THR 8 HELX_P A LYS 123 C LYS 22 1 1 15 A SER 127 C SER 26 HELX_P A LEU 138 C LEU 37 1 2 12 A THR 141 C THR 40 HELX_P A LEU 159 C LEU 58 1 3 19 hydrog WATSON-CRICK B DC 4 A N3 DC 1 1_555 C DG 30 B N1 DG 14 1_555 hydrog WATSON-CRICK B DC 4 A N4 DC 1 1_555 C DG 30 B O6 DG 14 1_555 hydrog WATSON-CRICK B DC 4 A O2 DC 1 1_555 C DG 30 B N2 DG 14 1_555 hydrog WATSON-CRICK B DA 5 A N1 DA 2 1_555 C DT 29 B N3 DT 13 1_555 hydrog WATSON-CRICK B DA 5 A N6 DA 2 1_555 C DT 29 B O4 DT 13 1_555 hydrog WATSON-CRICK B DC 6 A N3 DC 3 1_555 C DG 28 B N1 DG 12 1_555 hydrog WATSON-CRICK B DC 6 A N4 DC 3 1_555 C DG 28 B O6 DG 12 1_555 hydrog WATSON-CRICK B DC 6 A O2 DC 3 1_555 C DG 28 B N2 DG 12 1_555 hydrog WATSON-CRICK B DT 7 A N3 DT 4 1_555 C DA 27 B N1 DA 11 1_555 hydrog WATSON-CRICK B DT 7 A O4 DT 4 1_555 C DA 27 B N6 DA 11 1_555 hydrog WATSON-CRICK B DA 8 A N1 DA 5 1_555 C DT 26 B N3 DT 10 1_555 hydrog WATSON-CRICK B DA 8 A N6 DA 5 1_555 C DT 26 B O4 DT 10 1_555 hydrog WATSON-CRICK B DA 9 A N1 DA 6 1_555 C DT 25 B N3 DT 9 1_555 hydrog WATSON-CRICK B DA 9 A N6 DA 6 1_555 C DT 25 B O4 DT 9 1_555 hydrog WATSON-CRICK B DT 10 A N3 DT 7 1_555 C DA 24 B N1 DA 8 1_555 hydrog WATSON-CRICK B DT 10 A O4 DT 7 1_555 C DA 24 B N6 DA 8 1_555 hydrog WATSON-CRICK B DT 11 A N3 DT 8 1_555 C DA 23 B N1 DA 7 1_555 hydrog WATSON-CRICK B DT 11 A O4 DT 8 1_555 C DA 23 B N6 DA 7 1_555 hydrog WATSON-CRICK B DG 12 A N1 DG 9 1_555 C DC 22 B N3 DC 6 1_555 hydrog WATSON-CRICK B DG 12 A N2 DG 9 1_555 C DC 22 B O2 DC 6 1_555 hydrog WATSON-CRICK B DG 12 A O6 DG 9 1_555 C DC 22 B N4 DC 6 1_555 hydrog WATSON-CRICK B DA 13 A N1 DA 10 1_555 C DT 21 B N3 DT 5 1_555 hydrog WATSON-CRICK B DA 13 A N6 DA 10 1_555 C DT 21 B O4 DT 5 1_555 hydrog WATSON-CRICK B DA 14 A N1 DA 11 1_555 C DT 20 B N3 DT 4 1_555 hydrog WATSON-CRICK B DA 14 A N6 DA 11 1_555 C DT 20 B O4 DT 4 1_555 hydrog WATSON-CRICK B DG 15 A N1 DG 12 1_555 C DC 19 B N3 DC 3 1_555 hydrog WATSON-CRICK B DG 15 A N2 DG 12 1_555 C DC 19 B O2 DC 3 1_555 hydrog WATSON-CRICK B DG 15 A O6 DG 12 1_555 C DC 19 B N4 DC 3 1_555 hydrog WATSON-CRICK B DG 16 A N1 DG 13 1_555 C DC 18 B N3 DC 2 1_555 hydrog WATSON-CRICK B DG 16 A N2 DG 13 1_555 C DC 18 B O2 DC 2 1_555 hydrog WATSON-CRICK B DG 16 A O6 DG 13 1_555 C DC 18 B N4 DC 2 1_555 TRANSCRIPTION/DNA helix-turn-helix, TRANSCRIPTION-DNA COMPLEX MSX1_MOUSE UNP 3 167 P13297 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 1IG7 PDB 1 1IG7 1IG7 PDB 2 1IG7 167 224 1IG7 102 159 P13297 A 1 1 58 4 16 1IG7 4 16 1IG7 B 2 1 13 17 32 1IG7 17 32 1IG7 C 3 1 16 19 P 21 21 21