0.016482 0.000000 0.000000 0.000000 0.016482 0.000000 0.000000 0.000000 0.040631 0.00000 0.00000 0.00000 Vargason, J.M. Henderson, K. Ho, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 60.672 60.672 24.612 C9 H13 Br N3 O7 P 386.093 n 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N BR N 2 N P N 3 N O N 4 N O N 5 N O N 6 N N N 7 N C N 8 N C N 9 N O N 10 N N N 11 N C N 12 N N N 13 N C N 14 N C N 15 N C N 16 R C N 17 N O N 18 R C N 19 S C N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C N 47 N N N 48 N C N 49 N O N 50 N N N 51 N C N 52 N N N 53 N C N 54 N C N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N O N 70 N P N 71 N O N 72 N O N 73 N O N 74 N C N 75 R C N 76 N O N 77 S C N 78 N O N 79 N C N 80 R C Y 81 N N Y 82 N C Y 83 N N Y 84 N C N 85 N C N 86 N O N 87 N N N 88 N C N 89 N N N 90 N N Y 91 N C N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N O N 107 N H N 108 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N doub N 14 N sing N 15 N doub N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing Y 94 N sing Y 95 N sing Y 96 N doub N 97 N sing Y 98 N sing N 99 N sing Y 100 N doub N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 98 7265 7270 10.1073/pnas.121176898 11390969 A crystallographic map of the transition from B-DNA to A-DNA. 2001 10.2210/pdb1ih2/pdb pdb_00001ih2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 Mirrors IMAGE PLATE 2000-11-01 RIGAKU RAXIS IV Yale Mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 1967.997 5'-D(*GP*GP*(CBR)P*GP*(CBR)P*C)-3' 2 syn polymer 18.015 water 2 nat water no yes (DG)(DG)(CBR)(DG)(CBR)(DC) GGCGCC A,B polydeoxyribonucleotide n n n n n n 1 2.97 58.59 VAPOR DIFFUSION, SITTING DROP 6.0 magnesium chloride, sodium cacodylate, spermine tetrahydrochloride, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 magnesium chloride 1 sodium cacodylate 1 spermine tetrahydrochloride 1 -1.461 1 19 A 1 B 12 3.574 A_DG1:DC12_B 1 0.175 -0.929 0.624 -0.010 5.304 1 19 A 2 B 11 6.991 A_DG2:CBR11_B 2 -9.228 -0.381 0.308 -0.073 -8.035 1 19 A 3 B 10 2.999 A_CBR3:DG10_B 3 -5.275 0.348 0.704 -0.223 -1.820 1 19 A 4 B 9 4.564 A_DG4:CBR9_B 4 -1.706 -0.512 -0.056 -0.287 1.945 1 19 A 5 B 8 5.190 A_CBR5:DG8_B 5 -7.613 0.082 0.121 -0.186 8.234 1 19 A 6 B 7 -1.641 A_DC6:DG7_B 6 -9.348 0.033 -0.335 -0.046 2.653 35.620 A A 1 2 13.511 B B 12 11 3.052 8.191 0.239 -1.482 AA_DG1DG2:CBR11DC12_BB 1 2.101 -3.466 34.634 -3.477 -0.120 3.566 34.192 A A 2 3 2.313 B B 11 10 3.675 1.359 0.461 -1.821 AA_DG2CBR3:DG10CBR11_BB 2 -2.209 3.760 34.096 -3.334 -1.170 2.933 23.630 A A 3 4 1.215 B B 10 9 3.043 0.497 -0.545 -2.523 AA_CBR3DG4:CBR9DG10_BB 3 2.032 -4.968 23.538 -6.314 1.951 3.380 33.259 A A 4 5 0.228 B B 9 8 3.321 0.131 -0.972 -1.723 AA_DG4CBR5:DG8CBR9_BB 4 -2.668 4.667 33.155 -3.033 1.241 2.947 27.199 A A 5 6 8.129 B B 8 7 3.221 3.799 0.322 -1.878 AA_CBR5DC6:DG7DG8_BB 5 3.767 -8.060 26.677 -4.900 0.216 software chem_comp_atom chem_comp_bond database_2 struct_conn repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2001-06-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag Crystal Structure of the B-DNA Hexamer GGCGCC Resolved to 2.0 Angstrom Resolution Multi-Conformation Crystal Structure of GGm5CGm5CC Multi-Conformation Crystal Structure of GGm5CGCC Multi-Conformation Crystal Structure of GGBr5CGCC RCSB Y RCSB 2001-04-18 REL REL HOH water HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A G 1 n 1 DG 1 A G 2 n 2 DG 2 A BRO 3 n 3 CBR 3 A G 4 n 4 DG 4 A BRO 5 n 5 CBR 5 A C 6 n 6 DC 6 A G 7 n 1 DG 7 B G 8 n 2 DG 8 B BRO 9 n 3 CBR 9 B G 10 n 4 DG 10 B BRO 11 n 5 CBR 11 B C 12 n 6 DC 12 B author_defined_assembly 2 dimeric A CBR 3 A CBR 3 DC A CBR 5 A CBR 5 DC B CBR 9 B CBR 3 DC B CBR 11 B CBR 5 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.257 0.211 0.24 0.24 2.8 20.0 112 1206 1206 Random 1 0.0 0.0 MOLECULAR REPLACEMENT G.Parkinson, J.Vojtechovsky, L.Clowney, A.T.Brunger, H.M.Berman 2.8 20.0 2 246 4 240 0 0.005 0.95 65.7 2.8 99.0 1IH2 1215 1215 0.0 0.0 0.076 1 19.0 8.9 95.2 0.465 2.8 2.9 8.9 99.1 phasing AMoRE refinement CNS 0.9 data scaling SCALEPACK Crystal Structure of GGBr5CGBr5CC 1 N N 1 N N 2 N N covale 1.602 both A DG 2 A O3' DG 2 1_555 A CBR 3 A P CBR 3 1_555 covale 1.595 both A CBR 3 A O3' CBR 3 1_555 A DG 4 A P DG 4 1_555 covale 1.601 both A DG 4 A O3' DG 4 1_555 A CBR 5 A P CBR 5 1_555 covale 1.604 both A CBR 5 A O3' CBR 5 1_555 A DC 6 A P DC 6 1_555 covale 1.606 both B DG 8 B O3' DG 2 1_555 B CBR 9 B P CBR 3 1_555 covale 1.615 both B CBR 9 B O3' CBR 3 1_555 B DG 10 B P DG 4 1_555 covale 1.604 both B DG 10 B O3' DG 4 1_555 B CBR 11 B P CBR 5 1_555 covale 1.593 both B CBR 11 B O3' CBR 5 1_555 B DC 12 B P DC 6 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 12 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 12 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 12 B N4 DC 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B CBR 11 B N3 CBR 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B CBR 11 B O2 CBR 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B CBR 11 B N4 CBR 5 1_555 hydrog WATSON-CRICK A CBR 3 A N3 CBR 3 1_555 B DG 10 B N1 DG 4 1_555 hydrog WATSON-CRICK A CBR 3 A N4 CBR 3 1_555 B DG 10 B O6 DG 4 1_555 hydrog WATSON-CRICK A CBR 3 A O2 CBR 3 1_555 B DG 10 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B CBR 9 B N3 CBR 3 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B CBR 9 B O2 CBR 3 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B CBR 9 B N4 CBR 3 1_555 hydrog WATSON-CRICK A CBR 5 A N3 CBR 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A CBR 5 A N4 CBR 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A CBR 5 A O2 CBR 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 7 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 7 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 7 B N2 DG 1 1_555 DNA B to A DNA transition, DNA transition, structural transition, DNA 1IH2 PDB 1 1IH2 1 6 1IH2 1 6 1IH2 A 1 1 6 7 12 1IH2 7 12 1IH2 B 1 1 6 96 P 43 21 2