0.016482
0.000000
0.000000
0.000000
0.016482
0.000000
0.000000
0.000000
0.040631
0.00000
0.00000
0.00000
Vargason, J.M.
Henderson, K.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
60.672
60.672
24.612
C9 H13 Br N3 O7 P
386.093
n
5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
BR
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
N
N
7
N
C
N
8
N
C
N
9
N
O
N
10
N
N
N
11
N
C
N
12
N
N
N
13
N
C
N
14
N
C
N
15
N
C
N
16
R
C
N
17
N
O
N
18
R
C
N
19
S
C
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
N
47
N
N
N
48
N
C
N
49
N
O
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
C
N
54
N
C
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
O
N
70
N
P
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
C
N
75
R
C
N
76
N
O
N
77
S
C
N
78
N
O
N
79
N
C
N
80
R
C
Y
81
N
N
Y
82
N
C
Y
83
N
N
Y
84
N
C
N
85
N
C
N
86
N
O
N
87
N
N
N
88
N
C
N
89
N
N
N
90
N
N
Y
91
N
C
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
O
N
107
N
H
N
108
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
sing
Y
95
N
sing
Y
96
N
doub
N
97
N
sing
Y
98
N
sing
N
99
N
sing
Y
100
N
doub
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
7265
7270
10.1073/pnas.121176898
11390969
A crystallographic map of the transition from B-DNA to A-DNA.
2001
10.2210/pdb1ih2/pdb
pdb_00001ih2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
Mirrors
IMAGE PLATE
2000-11-01
RIGAKU RAXIS IV
Yale Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
1967.997
5'-D(*GP*GP*(CBR)P*GP*(CBR)P*C)-3'
2
syn
polymer
18.015
water
2
nat
water
no
yes
(DG)(DG)(CBR)(DG)(CBR)(DC)
GGCGCC
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.97
58.59
VAPOR DIFFUSION, SITTING DROP
6.0
magnesium chloride, sodium cacodylate, spermine tetrahydrochloride, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
magnesium chloride
1
sodium cacodylate
1
spermine tetrahydrochloride
1
-1.461
1
19
A
1
B
12
3.574
A_DG1:DC12_B
1
0.175
-0.929
0.624
-0.010
5.304
1
19
A
2
B
11
6.991
A_DG2:CBR11_B
2
-9.228
-0.381
0.308
-0.073
-8.035
1
19
A
3
B
10
2.999
A_CBR3:DG10_B
3
-5.275
0.348
0.704
-0.223
-1.820
1
19
A
4
B
9
4.564
A_DG4:CBR9_B
4
-1.706
-0.512
-0.056
-0.287
1.945
1
19
A
5
B
8
5.190
A_CBR5:DG8_B
5
-7.613
0.082
0.121
-0.186
8.234
1
19
A
6
B
7
-1.641
A_DC6:DG7_B
6
-9.348
0.033
-0.335
-0.046
2.653
35.620
A
A
1
2
13.511
B
B
12
11
3.052
8.191
0.239
-1.482
AA_DG1DG2:CBR11DC12_BB
1
2.101
-3.466
34.634
-3.477
-0.120
3.566
34.192
A
A
2
3
2.313
B
B
11
10
3.675
1.359
0.461
-1.821
AA_DG2CBR3:DG10CBR11_BB
2
-2.209
3.760
34.096
-3.334
-1.170
2.933
23.630
A
A
3
4
1.215
B
B
10
9
3.043
0.497
-0.545
-2.523
AA_CBR3DG4:CBR9DG10_BB
3
2.032
-4.968
23.538
-6.314
1.951
3.380
33.259
A
A
4
5
0.228
B
B
9
8
3.321
0.131
-0.972
-1.723
AA_DG4CBR5:DG8CBR9_BB
4
-2.668
4.667
33.155
-3.033
1.241
2.947
27.199
A
A
5
6
8.129
B
B
8
7
3.221
3.799
0.322
-1.878
AA_CBR5DC6:DG7DG8_BB
5
3.767
-8.060
26.677
-4.900
0.216
software
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2001-06-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
Crystal Structure of the B-DNA Hexamer GGCGCC Resolved to 2.0 Angstrom Resolution
Multi-Conformation Crystal Structure of GGm5CGm5CC
Multi-Conformation Crystal Structure of GGm5CGCC
Multi-Conformation Crystal Structure of GGBr5CGCC
RCSB
Y
RCSB
2001-04-18
REL
REL
HOH
water
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
BRO
3
n
3
CBR
3
A
G
4
n
4
DG
4
A
BRO
5
n
5
CBR
5
A
C
6
n
6
DC
6
A
G
7
n
1
DG
7
B
G
8
n
2
DG
8
B
BRO
9
n
3
CBR
9
B
G
10
n
4
DG
10
B
BRO
11
n
5
CBR
11
B
C
12
n
6
DC
12
B
author_defined_assembly
2
dimeric
A
CBR
3
A
CBR
3
DC
A
CBR
5
A
CBR
5
DC
B
CBR
9
B
CBR
3
DC
B
CBR
11
B
CBR
5
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.257
0.211
0.24
0.24
2.8
20.0
112
1206
1206
Random
1
0.0
0.0
MOLECULAR REPLACEMENT
G.Parkinson, J.Vojtechovsky, L.Clowney, A.T.Brunger, H.M.Berman
2.8
20.0
2
246
4
240
0
0.005
0.95
65.7
2.8
99.0
1IH2
1215
1215
0.0
0.0
0.076
1
19.0
8.9
95.2
0.465
2.8
2.9
8.9
99.1
phasing
AMoRE
refinement
CNS
0.9
data scaling
SCALEPACK
Crystal Structure of GGBr5CGBr5CC
1
N
N
1
N
N
2
N
N
covale
1.602
both
A
DG
2
A
O3'
DG
2
1_555
A
CBR
3
A
P
CBR
3
1_555
covale
1.595
both
A
CBR
3
A
O3'
CBR
3
1_555
A
DG
4
A
P
DG
4
1_555
covale
1.601
both
A
DG
4
A
O3'
DG
4
1_555
A
CBR
5
A
P
CBR
5
1_555
covale
1.604
both
A
CBR
5
A
O3'
CBR
5
1_555
A
DC
6
A
P
DC
6
1_555
covale
1.606
both
B
DG
8
B
O3'
DG
2
1_555
B
CBR
9
B
P
CBR
3
1_555
covale
1.615
both
B
CBR
9
B
O3'
CBR
3
1_555
B
DG
10
B
P
DG
4
1_555
covale
1.604
both
B
DG
10
B
O3'
DG
4
1_555
B
CBR
11
B
P
CBR
5
1_555
covale
1.593
both
B
CBR
11
B
O3'
CBR
5
1_555
B
DC
12
B
P
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
CBR
11
B
N3
CBR
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
CBR
11
B
O2
CBR
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
CBR
11
B
N4
CBR
5
1_555
hydrog
WATSON-CRICK
A
CBR
3
A
N3
CBR
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
CBR
3
A
N4
CBR
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
CBR
3
A
O2
CBR
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
CBR
9
B
N3
CBR
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
CBR
9
B
O2
CBR
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
CBR
9
B
N4
CBR
3
1_555
hydrog
WATSON-CRICK
A
CBR
5
A
N3
CBR
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
CBR
5
A
N4
CBR
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
CBR
5
A
O2
CBR
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
1
1_555
DNA
B to A DNA transition, DNA transition, structural transition, DNA
1IH2
PDB
1
1IH2
1
6
1IH2
1
6
1IH2
A
1
1
6
7
12
1IH2
7
12
1IH2
B
1
1
6
96
P 43 21 2