0.023616
0.013634
0.000000
0.000000
0.027269
0.000000
0.000000
0.000000
0.005574
0.00000
0.00000
0.00000
Vargason, J.M.
Henderson, K.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
120.00
42.345
42.345
179.399
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
H
N
111
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
7265
7270
10.1073/pnas.121176898
11390969
A crystallographic map of the transition from B-DNA to A-DNA.
2001
10.2210/pdb1ih3/pdb
pdb_00001ih3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
1999-09-08
RIGAKU RAXIS IV
Yale Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
1838.259
5'-D(*GP*GP*(5CM)P*GP*(5CM)P*C)-3'
8
syn
polymer
18.015
water
73
nat
water
no
yes
(DG)(DG)(5CM)(DG)(5CM)(DC)
GGCGCC
A,B,C,D,E,F,G,H
polydeoxyribonucleotide
n
n
n
n
n
n
1
4.61
73.34
VAPOR DIFFUSION, SITTING DROP
6.0
magnesium chloride, sodium cacodylate, spermine tetrahydrochloride, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
magnesium chloride
1
sodium cacodylate
1
spermine tetrahydrochloride
1
-8.353
1
19
A
1
B
12
0.263
A_DG1:DC12_B
1
3.014
-0.304
-0.170
-0.181
-9.725
1
19
A
2
B
11
4.462
A_DG2:5CM11_B
2
-11.322
-0.080
-0.244
-0.067
-1.341
1
19
A
3
B
10
2.478
A_5CM3:DG10_B
3
-9.806
-0.091
-0.139
-0.108
-1.257
1
19
A
4
B
9
3.569
A_DG4:5CM9_B
4
-10.419
-0.195
-0.034
-0.106
1.656
1
19
A
5
B
8
4.094
A_5CM5:DG8_B
5
-6.529
0.070
-0.106
-0.163
6.611
1
19
A
6
B
7
-3.262
A_DC6:DG7_B
6
6.437
0.304
-0.083
-0.273
-9.094
1
19
C
13
D
24
3.351
C_DG13:DC24_D
7
0.479
-0.410
-0.081
-0.250
-0.616
1
19
C
14
D
23
-1.315
C_DG14:5CM23_D
8
-5.246
-0.216
0.042
-0.298
7.153
1
19
C
15
D
22
1.164
C_5CM15:DG22_D
9
-11.144
0.173
-0.017
-0.190
-2.673
1
19
C
16
D
21
2.039
C_DG16:5CM21_D
10
-11.874
-0.026
-0.096
-0.217
2.236
1
19
C
17
D
20
6.578
C_5CM17:DG20_D
11
-6.801
0.368
-0.040
-0.141
7.129
1
19
C
18
D
19
-2.498
C_DC18:DG19_D
12
5.971
0.252
-0.169
-0.242
-9.956
1
19
E
25
F
36
1.549
E_DG25:DC36_F
13
0.653
-0.482
-0.292
-0.187
-1.054
1
19
E
26
F
35
0.701
E_DG26:5CM35_F
14
-5.151
-0.298
-0.089
-0.153
7.006
1
19
E
27
F
34
0.863
E_5CM27:DG34_F
15
-10.873
0.173
-0.131
-0.117
-0.495
1
19
E
28
F
33
3.454
E_DG28:5CM33_F
16
-12.524
0.016
-0.136
-0.135
3.124
1
19
E
29
F
32
4.695
E_5CM29:DG32_F
17
-8.115
0.291
-0.226
-0.223
4.820
1
19
E
30
F
31
-2.642
E_DC30:DG31_F
18
10.475
0.321
-0.127
-0.316
-15.661
1
19
G
37
H
48
4.369
G_DG37:DC48_H
19
2.137
-0.244
-0.253
-0.058
-9.786
1
19
G
38
H
47
4.461
G_DG38:5CM47_H
20
-7.950
-0.518
0.153
-0.141
-5.102
1
19
G
39
H
46
4.762
G_5CM39:DG46_H
21
-5.446
-0.127
0.123
-0.300
2.802
1
19
G
40
H
45
2.174
G_DG40:5CM45_H
22
-7.540
-0.248
0.048
-0.365
12.561
1
19
G
41
H
44
-0.681
G_5CM41:DG44_H
23
-9.497
0.378
-0.250
-0.166
16.240
1
19
G
42
H
43
0.076
G_DC42:DG43_H
24
-5.511
0.243
-0.541
-0.082
3.047
31.854
A
A
1
2
11.199
B
B
12
11
3.476
6.109
0.345
-2.012
AA_DG1DG2:5CM11DC12_BB
1
0.974
-1.785
31.263
-4.788
-0.450
3.090
32.722
A
A
2
3
1.430
B
B
11
10
3.134
0.805
-0.288
-1.574
AA_DG25CM3:DG105CM11_BB
2
0.604
-1.072
32.707
-2.926
0.610
2.575
25.710
A
A
3
4
18.916
B
B
10
9
3.358
8.272
0.489
-1.919
AA_5CM3DG4:5CM9DG10_BB
3
-0.092
0.211
24.364
-6.481
-1.123
3.243
33.699
A
A
4
5
1.796
B
B
9
8
3.296
1.041
0.222
-1.772
AA_DG45CM5:DG85CM9_BB
4
0.264
-0.455
33.682
-3.226
-0.340
2.854
30.448
A
A
5
6
12.127
B
B
8
7
3.320
6.324
-0.462
-2.001
AA_5CM5DC6:DG7DG8_BB
5
-0.641
1.228
29.793
-5.017
0.758
2.904
28.075
C
C
13
14
11.521
D
D
24
23
3.244
5.547
-0.921
-1.768
CC_DG13DG14:5CM23DC24_DD
6
-2.325
4.830
27.435
-4.886
1.379
3.129
34.236
C
C
14
15
4.614
D
D
23
22
3.247
2.714
0.028
-1.406
CC_DG145CM15:DG225CM23_DD
7
-0.319
0.543
34.130
-2.806
-0.097
2.957
32.908
C
C
15
16
16.481
D
D
22
21
3.534
9.212
0.393
-1.685
CC_5CM15DG16:5CM21DG22_DD
8
2.073
-3.708
31.560
-4.569
-0.335
3.302
31.867
C
C
16
17
-0.144
D
D
21
20
3.287
-0.079
0.610
-1.595
CC_DG165CM17:DG205CM21_DD
9
0.674
-1.228
31.860
-2.890
-0.988
2.881
30.191
C
C
17
18
9.044
D
D
20
19
3.222
4.693
-0.578
-2.025
CC_5CM17DC18:DG19DG20_DD
10
-0.225
0.434
29.832
-4.783
1.066
2.466
25.307
E
E
25
26
18.820
F
F
36
35
3.157
8.049
-1.007
-2.124
EE_DG25DG26:5CM35DC36_FF
11
-5.081
11.882
23.476
-6.935
0.981
3.069
35.102
E
E
26
27
6.242
F
F
35
34
3.236
3.756
-0.196
-1.489
EE_DG265CM27:DG345CM35_FF
12
-1.568
2.605
34.873
-3.013
0.099
2.601
30.386
E
E
27
28
21.697
F
F
34
33
3.502
11.118
0.476
-1.901
EE_5CM27DG28:5CM33DG34_FF
13
0.987
-1.927
28.307
-5.786
-0.717
3.083
33.202
E
E
28
29
5.540
F
F
33
32
3.260
3.160
0.221
-1.830
EE_DG285CM29:DG325CM33_FF
14
1.325
-2.322
33.029
-3.717
-0.171
2.661
29.947
E
E
29
30
17.386
F
F
32
31
3.362
8.855
-0.581
-1.963
EE_5CM29DC30:DG31DG32_FF
15
-0.672
1.319
28.629
-5.522
0.994
3.063
27.707
G
G
37
38
6.937
H
H
48
47
3.282
3.314
0.403
-1.705
GG_DG37DG38:5CM47DC48_HH
16
0.336
-0.703
27.510
-4.339
-0.763
3.462
34.552
G
G
38
39
-5.355
H
H
47
46
3.356
-3.174
-0.173
-1.577
GG_DG385CM39:DG465CM47_HH
17
2.503
-4.224
34.322
-2.141
0.696
3.251
27.172
G
G
39
40
2.738
H
H
46
45
3.321
1.286
0.018
-1.439
GG_5CM39DG40:5CM45DG46_HH
18
0.420
-0.895
27.139
-3.388
0.067
3.160
33.929
G
G
40
41
3.228
H
H
45
44
3.237
1.883
-0.197
-1.337
GG_DG405CM41:DG445CM45_HH
19
0.089
-0.152
33.878
-2.587
0.351
3.241
30.883
G
G
41
42
5.848
H
H
44
43
3.362
3.108
-0.428
-1.225
GG_5CM41DC42:DG43DG44_HH
20
-1.337
2.515
30.702
-2.912
0.542
software
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2001-06-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
Crystal structure of the B-DNA hexamer GGCGCC resolved to 2.0 angstrom resolution
Crystal structure of GGBr5CGBr5CC
Multi-Conformation Crystal Structure of GGm5CGCC
Multi-Conformation Crystal Structure of GGBr5CGCC
RCSB
Y
RCSB
2001-04-18
REL
REL
HOH
water
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
53
2
HOH
HOH
53
A
HOH
54
2
HOH
HOH
54
A
HOH
99
2
HOH
HOH
99
A
HOH
116
2
HOH
HOH
116
A
HOH
117
2
HOH
HOH
117
A
HOH
56
2
HOH
HOH
56
B
HOH
57
2
HOH
HOH
57
B
HOH
58
2
HOH
HOH
58
B
HOH
59
2
HOH
HOH
59
B
HOH
60
2
HOH
HOH
60
B
HOH
97
2
HOH
HOH
97
B
HOH
98
2
HOH
HOH
98
B
HOH
114
2
HOH
HOH
114
B
HOH
115
2
HOH
HOH
115
B
HOH
61
2
HOH
HOH
61
C
HOH
62
2
HOH
HOH
62
C
HOH
63
2
HOH
HOH
63
C
HOH
64
2
HOH
HOH
64
C
HOH
65
2
HOH
HOH
65
C
HOH
66
2
HOH
HOH
66
C
HOH
96
2
HOH
HOH
96
C
HOH
105
2
HOH
HOH
105
C
HOH
106
2
HOH
HOH
106
C
HOH
108
2
HOH
HOH
108
C
HOH
109
2
HOH
HOH
109
C
HOH
68
2
HOH
HOH
68
D
HOH
69
2
HOH
HOH
69
D
HOH
70
2
HOH
HOH
70
D
HOH
71
2
HOH
HOH
71
D
HOH
72
2
HOH
HOH
72
D
HOH
90
2
HOH
HOH
90
D
HOH
100
2
HOH
HOH
100
D
HOH
101
2
HOH
HOH
101
D
HOH
102
2
HOH
HOH
102
D
HOH
103
2
HOH
HOH
103
D
HOH
107
2
HOH
HOH
107
D
HOH
110
2
HOH
HOH
110
D
HOH
55
2
HOH
HOH
55
E
HOH
67
2
HOH
HOH
67
E
HOH
73
2
HOH
HOH
73
E
HOH
74
2
HOH
HOH
74
E
HOH
75
2
HOH
HOH
75
E
HOH
76
2
HOH
HOH
76
E
HOH
77
2
HOH
HOH
77
E
HOH
78
2
HOH
HOH
78
E
HOH
79
2
HOH
HOH
79
E
HOH
94
2
HOH
HOH
94
E
HOH
95
2
HOH
HOH
95
E
HOH
104
2
HOH
HOH
104
E
HOH
80
2
HOH
HOH
80
F
HOH
81
2
HOH
HOH
81
F
HOH
82
2
HOH
HOH
82
F
HOH
83
2
HOH
HOH
83
F
HOH
84
2
HOH
HOH
84
F
HOH
85
2
HOH
HOH
85
F
HOH
92
2
HOH
HOH
92
F
HOH
93
2
HOH
HOH
93
F
HOH
111
2
HOH
HOH
111
F
HOH
112
2
HOH
HOH
112
F
HOH
113
2
HOH
HOH
113
F
HOH
118
2
HOH
HOH
118
F
HOH
86
2
HOH
HOH
86
G
HOH
87
2
HOH
HOH
87
G
HOH
88
2
HOH
HOH
88
G
HOH
89
2
HOH
HOH
89
G
HOH
121
2
HOH
HOH
121
G
HOH
91
2
HOH
HOH
91
H
HOH
119
2
HOH
HOH
119
H
HOH
120
2
HOH
HOH
120
H
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
+C
3
n
3
5CM
3
A
G
4
n
4
DG
4
A
+C
5
n
5
5CM
5
A
C
6
n
6
DC
6
A
G
7
n
1
DG
7
B
G
8
n
2
DG
8
B
+C
9
n
3
5CM
9
B
G
10
n
4
DG
10
B
+C
11
n
5
5CM
11
B
C
12
n
6
DC
12
B
G
13
n
1
DG
13
C
G
14
n
2
DG
14
C
+C
15
n
3
5CM
15
C
G
16
n
4
DG
16
C
+C
17
n
5
5CM
17
C
C
18
n
6
DC
18
C
G
19
n
1
DG
19
D
G
20
n
2
DG
20
D
+C
21
n
3
5CM
21
D
G
22
n
4
DG
22
D
+C
23
n
5
5CM
23
D
C
24
n
6
DC
24
D
G
25
n
1
DG
25
E
G
26
n
2
DG
26
E
+C
27
n
3
5CM
27
E
G
28
n
4
DG
28
E
+C
29
n
5
5CM
29
E
C
30
n
6
DC
30
E
G
31
n
1
DG
31
F
G
32
n
2
DG
32
F
+C
33
n
3
5CM
33
F
G
34
n
4
DG
34
F
+C
35
n
5
5CM
35
F
C
36
n
6
DC
36
F
G
37
n
1
DG
37
G
G
38
n
2
DG
38
G
+C
39
n
3
5CM
39
G
G
40
n
4
DG
40
G
+C
41
n
5
5CM
41
G
C
42
n
6
DC
42
G
G
43
n
1
DG
43
H
G
44
n
2
DG
44
H
+C
45
n
3
5CM
45
H
G
46
n
4
DG
46
H
+C
47
n
5
5CM
47
H
C
48
n
6
DC
48
H
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
A
5CM
3
A
5CM
3
DC
A
5CM
5
A
5CM
5
DC
B
5CM
9
B
5CM
3
DC
B
5CM
11
B
5CM
5
DC
C
5CM
15
C
5CM
3
DC
C
5CM
17
C
5CM
5
DC
D
5CM
21
D
5CM
3
DC
D
5CM
23
D
5CM
5
DC
E
5CM
27
E
5CM
3
DC
E
5CM
29
E
5CM
5
DC
F
5CM
33
F
5CM
3
DC
F
5CM
35
F
5CM
5
DC
G
5CM
39
G
5CM
3
DC
G
5CM
41
G
5CM
5
DC
H
5CM
45
H
5CM
3
DC
H
5CM
47
H
5CM
5
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.2
0.173
0.198
0.198
2.4
20.0
325
7269
7269
Random
1
0.0
0.0
MOLECULAR REPLACEMENT
G.Parkinson, J.Vojtechovsky, L.Clowney, A.T.Brunger, H.M.Berman
2.4
20.0
73
1049
16
960
0
0.003
0.82
49.7
2.4
20.0
1IH3
7273
7273
0.0
0.0
0.058
1
30.4
6.8
91.7
0.353
2.4
2.49
4.0
61.5
phasing
AMoRE
refinement
CNS
0.9
data scaling
SCALEPACK
Multi-conformation crystal structure of GGm5CGm5CC
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
covale
1.605
both
A
DG
2
A
O3'
DG
2
1_555
A
5CM
3
A
P
5CM
3
1_555
covale
1.606
both
A
5CM
3
A
O3'
5CM
3
1_555
A
DG
4
A
P
DG
4
1_555
covale
1.610
both
A
DG
4
A
O3'
DG
4
1_555
A
5CM
5
A
P
5CM
5
1_555
covale
1.604
both
A
5CM
5
A
O3'
5CM
5
1_555
A
DC
6
A
P
DC
6
1_555
covale
1.608
both
B
DG
8
B
O3'
DG
2
1_555
B
5CM
9
B
P
5CM
3
1_555
covale
1.606
both
B
5CM
9
B
O3'
5CM
3
1_555
B
DG
10
B
P
DG
4
1_555
covale
1.610
both
B
DG
10
B
O3'
DG
4
1_555
B
5CM
11
B
P
5CM
5
1_555
covale
1.599
both
B
5CM
11
B
O3'
5CM
5
1_555
B
DC
12
B
P
DC
6
1_555
covale
1.601
both
C
DG
14
C
O3'
DG
2
1_555
C
5CM
15
C
P
5CM
3
1_555
covale
1.609
both
C
5CM
15
C
O3'
5CM
3
1_555
C
DG
16
C
P
DG
4
1_555
covale
1.607
both
C
DG
16
C
O3'
DG
4
1_555
C
5CM
17
C
P
5CM
5
1_555
covale
1.608
both
C
5CM
17
C
O3'
5CM
5
1_555
C
DC
18
C
P
DC
6
1_555
covale
1.608
both
D
DG
20
D
O3'
DG
2
1_555
D
5CM
21
D
P
5CM
3
1_555
covale
1.603
both
D
5CM
21
D
O3'
5CM
3
1_555
D
DG
22
D
P
DG
4
1_555
covale
1.606
both
D
DG
22
D
O3'
DG
4
1_555
D
5CM
23
D
P
5CM
5
1_555
covale
1.605
both
D
5CM
23
D
O3'
5CM
5
1_555
D
DC
24
D
P
DC
6
1_555
covale
1.603
both
E
DG
26
E
O3'
DG
2
1_555
E
5CM
27
E
P
5CM
3
1_555
covale
1.603
both
E
5CM
27
E
O3'
5CM
3
1_555
E
DG
28
E
P
DG
4
1_555
covale
1.604
both
E
DG
28
E
O3'
DG
4
1_555
E
5CM
29
E
P
5CM
5
1_555
covale
1.608
both
E
5CM
29
E
O3'
5CM
5
1_555
E
DC
30
E
P
DC
6
1_555
covale
1.603
both
F
DG
32
F
O3'
DG
2
1_555
F
5CM
33
F
P
5CM
3
1_555
covale
1.608
both
F
5CM
33
F
O3'
5CM
3
1_555
F
DG
34
F
P
DG
4
1_555
covale
1.606
both
F
DG
34
F
O3'
DG
4
1_555
F
5CM
35
F
P
5CM
5
1_555
covale
1.604
both
F
5CM
35
F
O3'
5CM
5
1_555
F
DC
36
F
P
DC
6
1_555
covale
1.604
both
G
DG
38
G
O3'
DG
2
1_555
G
5CM
39
G
P
5CM
3
1_555
covale
1.607
both
G
5CM
39
G
O3'
5CM
3
1_555
G
DG
40
G
P
DG
4
1_555
covale
1.607
both
G
DG
40
G
O3'
DG
4
1_555
G
5CM
41
G
P
5CM
5
1_555
covale
1.606
both
G
5CM
41
G
O3'
5CM
5
1_555
G
DC
42
G
P
DC
6
1_555
covale
1.605
both
H
DG
44
H
O3'
DG
2
1_555
H
5CM
45
H
P
5CM
3
1_555
covale
1.610
both
H
5CM
45
H
O3'
5CM
3
1_555
H
DG
46
H
P
DG
4
1_555
covale
1.609
both
H
DG
46
H
O3'
DG
4
1_555
H
5CM
47
H
P
5CM
5
1_555
covale
1.608
both
H
5CM
47
H
O3'
5CM
5
1_555
H
DC
48
H
P
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
5CM
11
B
N3
5CM
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
5CM
11
B
O2
5CM
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
5CM
11
B
N4
5CM
5
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
N3
5CM
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
N4
5CM
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
O2
5CM
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
5CM
9
B
N3
5CM
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
5CM
9
B
O2
5CM
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
5CM
9
B
N4
5CM
3
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
N3
5CM
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
N4
5CM
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
5
A
O2
5CM
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
1
1_555
hydrog
DC-DG PAIR
A
DC
6
A
O2
DC
6
1_555
D
DG
19
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N1
DG
1
1_555
D
DC
24
D
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N2
DG
1
1_555
D
DC
24
D
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
O6
DG
1
1_555
D
DC
24
D
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N1
DG
2
1_555
D
5CM
23
D
N3
5CM
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N2
DG
2
1_555
D
5CM
23
D
O2
5CM
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
O6
DG
2
1_555
D
5CM
23
D
N4
5CM
5
1_555
hydrog
WATSON-CRICK
C
5CM
15
C
N3
5CM
3
1_555
D
DG
22
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
5CM
15
C
N4
5CM
3
1_555
D
DG
22
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
5CM
15
C
O2
5CM
3
1_555
D
DG
22
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N1
DG
4
1_555
D
5CM
21
D
N3
5CM
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N2
DG
4
1_555
D
5CM
21
D
O2
5CM
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
O6
DG
4
1_555
D
5CM
21
D
N4
5CM
3
1_555
hydrog
WATSON-CRICK
C
5CM
17
C
N3
5CM
5
1_555
D
DG
20
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
5CM
17
C
N4
5CM
5
1_555
D
DG
20
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
5CM
17
C
O2
5CM
5
1_555
D
DG
20
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N3
DC
6
1_555
D
DG
19
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N4
DC
6
1_555
D
DG
19
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
O2
DC
6
1_555
D
DG
19
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
E
DG
25
E
N1
DG
1
1_555
F
DC
36
F
N3
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
25
E
N2
DG
1
1_555
F
DC
36
F
O2
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
25
E
O6
DG
1
1_555
F
DC
36
F
N4
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N1
DG
2
1_555
F
5CM
35
F
N3
5CM
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N2
DG
2
1_555
F
5CM
35
F
O2
5CM
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
O6
DG
2
1_555
F
5CM
35
F
N4
5CM
5
1_555
hydrog
WATSON-CRICK
E
5CM
27
E
N3
5CM
3
1_555
F
DG
34
F
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
5CM
27
E
N4
5CM
3
1_555
F
DG
34
F
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
5CM
27
E
O2
5CM
3
1_555
F
DG
34
F
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N1
DG
4
1_555
F
5CM
33
F
N3
5CM
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N2
DG
4
1_555
F
5CM
33
F
O2
5CM
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
O6
DG
4
1_555
F
5CM
33
F
N4
5CM
3
1_555
hydrog
WATSON-CRICK
E
5CM
29
E
N3
5CM
5
1_555
F
DG
32
F
N1
DG
2
1_555
hydrog
WATSON-CRICK
E
5CM
29
E
N4
5CM
5
1_555
F
DG
32
F
O6
DG
2
1_555
hydrog
WATSON-CRICK
E
5CM
29
E
O2
5CM
5
1_555
F
DG
32
F
N2
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
30
E
N3
DC
6
1_555
F
DG
31
F
N1
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
30
E
N4
DC
6
1_555
F
DG
31
F
O6
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
30
E
O2
DC
6
1_555
F
DG
31
F
N2
DG
1
1_555
hydrog
WATSON-CRICK
G
DG
37
G
N1
DG
1
1_555
H
DC
48
H
N3
DC
6
1_555
hydrog
WATSON-CRICK
G
DG
37
G
N2
DG
1
1_555
H
DC
48
H
O2
DC
6
1_555
hydrog
WATSON-CRICK
G
DG
37
G
O6
DG
1
1_555
H
DC
48
H
N4
DC
6
1_555
hydrog
WATSON-CRICK
G
DG
38
G
N1
DG
2
1_555
H
5CM
47
H
N3
5CM
5
1_555
hydrog
WATSON-CRICK
G
DG
38
G
N2
DG
2
1_555
H
5CM
47
H
O2
5CM
5
1_555
hydrog
WATSON-CRICK
G
DG
38
G
O6
DG
2
1_555
H
5CM
47
H
N4
5CM
5
1_555
hydrog
WATSON-CRICK
G
5CM
39
G
N3
5CM
3
1_555
H
DG
46
H
N1
DG
4
1_555
hydrog
WATSON-CRICK
G
5CM
39
G
N4
5CM
3
1_555
H
DG
46
H
O6
DG
4
1_555
hydrog
WATSON-CRICK
G
5CM
39
G
O2
5CM
3
1_555
H
DG
46
H
N2
DG
4
1_555
hydrog
WATSON-CRICK
G
DG
40
G
N1
DG
4
1_555
H
5CM
45
H
N3
5CM
3
1_555
hydrog
WATSON-CRICK
G
DG
40
G
N2
DG
4
1_555
H
5CM
45
H
O2
5CM
3
1_555
hydrog
WATSON-CRICK
G
DG
40
G
O6
DG
4
1_555
H
5CM
45
H
N4
5CM
3
1_555
hydrog
WATSON-CRICK
G
5CM
41
G
N3
5CM
5
1_555
H
DG
44
H
N1
DG
2
1_555
hydrog
WATSON-CRICK
G
5CM
41
G
N4
5CM
5
1_555
H
DG
44
H
O6
DG
2
1_555
hydrog
WATSON-CRICK
G
5CM
41
G
O2
5CM
5
1_555
H
DG
44
H
N2
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
42
G
N3
DC
6
1_555
H
DG
43
H
N1
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
42
G
N4
DC
6
1_555
H
DG
43
H
O6
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
42
G
O2
DC
6
1_555
H
DG
43
H
N2
DG
1
1_555
DNA
B to A DNA transition, DNA transition, structural transition, DNA
1IH3
PDB
1
1IH3
1
6
1IH3
1
6
1IH3
A
1
1
6
7
12
1IH3
7
12
1IH3
B
1
1
6
13
18
1IH3
13
18
1IH3
C
1
1
6
19
24
1IH3
19
24
1IH3
D
1
1
6
25
30
1IH3
25
30
1IH3
E
1
1
6
31
36
1IH3
31
36
1IH3
F
1
1
6
37
42
1IH3
37
42
1IH3
G
1
1
6
43
48
1IH3
43
48
1IH3
H
1
1
6
154
P 32 2 1