0.023847
0.013768
0.000000
0.000000
0.027536
0.000000
0.000000
0.000000
0.005659
0.00000
0.00000
0.00000
Vargason, J.M.
Henderson, K.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
120.00
41.934
41.934
176.697
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
N
50
N
N
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
P
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
C
N
78
R
C
N
79
N
O
N
80
S
C
N
81
N
O
N
82
N
C
N
83
R
C
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
Y
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
H
N
111
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
7265
7270
10.1073/pnas.121176898
11390969
A crystallographic map of the transition from B-DNA to A-DNA.
2001
10.2210/pdb1ih4/pdb
pdb_00001ih4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
mirrors
IMAGE PLATE
2000-08-18
RIGAKU RAXIS IV
Yale Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU300
1824.232
5'-D(*GP*GP*(5CM)P*GP*CP*C)-3'
8
syn
polymer
18.015
water
115
nat
water
no
yes
(DG)(DG)(5CM)(DG)(DC)(DC)
GGCGCC
A,B,C,D,E,F,G,H
polydeoxyribonucleotide
n
n
n
n
n
n
1
3.54
65.29
VAPOR DIFFUSION, SITTING DROP
6.0
magnesium chloride, sodium cacodylate, spermine tetrahydrochloride, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
magnesium chloride
1
sodium cacodylate
1
spermine tetrahydrochloride
1
-9.645
1
19
A
1
B
12
0.213
A_DG1:DC12_B
1
2.513
-0.309
-0.249
-0.107
-9.523
1
19
A
2
B
11
2.449
A_DG2:DC11_B
2
-10.519
-0.240
-0.266
-0.141
-3.156
1
19
A
3
B
10
-0.628
A_5CM3:DG10_B
3
-9.326
0.083
0.009
-0.225
-3.613
1
19
A
4
B
9
1.099
A_DG4:5CM9_B
4
-11.157
-0.266
-0.119
-0.180
2.269
1
19
A
5
B
8
3.319
A_DC5:DG8_B
5
-7.925
0.260
-0.153
-0.128
6.789
1
19
A
6
B
7
-2.713
A_DC6:DG7_B
6
4.871
0.418
-0.050
-0.199
-5.759
1
19
C
13
D
24
0.316
C_DG13:DC24_D
7
0.890
-0.270
-0.079
-0.114
1.331
1
19
C
14
D
23
1.123
C_DG14:DC23_D
8
-5.755
-0.304
0.029
-0.131
6.575
1
19
C
15
D
22
-0.061
C_5CM15:DG22_D
9
-13.867
0.215
-0.099
-0.159
-4.629
1
19
C
16
D
21
2.027
C_DG16:5CM21_D
10
-13.263
-0.218
-0.081
-0.155
2.997
1
19
C
17
D
20
4.134
C_DC17:DG20_D
11
-9.061
0.276
-0.038
-0.076
8.213
1
19
C
18
D
19
-0.085
C_DC18:DG19_D
12
3.324
0.265
-0.288
-0.079
-5.231
1
19
E
25
F
36
1.476
E_DG25:DC36_F
13
0.280
-0.335
-0.190
-0.093
2.697
1
19
E
26
F
35
1.049
E_DG26:DC35_F
14
-3.414
-0.404
-0.002
-0.164
6.573
1
19
E
27
F
34
0.098
E_5CM27:DG34_F
15
-12.273
0.187
-0.188
-0.196
-5.091
1
19
E
28
F
33
1.766
E_DG28:5CM33_F
16
-12.634
-0.196
-0.053
-0.133
-1.507
1
19
E
29
F
32
5.912
E_DC29:DG32_F
17
-8.816
0.321
-0.118
-0.120
5.785
1
19
E
30
F
31
-2.705
E_DC30:DG31_F
18
6.376
0.298
-0.047
-0.198
-16.061
1
19
G
37
H
48
-0.302
G_DG37:DC48_H
19
-4.258
-0.342
-0.328
-0.082
-18.590
1
19
G
38
H
47
0.627
G_DG38:DC47_H
20
-10.485
-0.505
-0.282
-0.176
-15.021
1
19
G
39
H
46
1.585
G_5CM39:DG46_H
21
-3.090
0.443
-0.001
-0.228
12.434
1
19
G
40
H
45
-0.018
G_DG40:5CM45_H
22
-2.738
-0.209
0.037
-0.271
14.411
1
19
G
41
H
44
3.915
G_DC41:DG44_H
23
-9.411
0.182
-0.114
-0.192
13.810
1
19
G
42
H
43
-1.656
G_DC42:DG43_H
24
-9.410
0.274
-0.154
-0.163
2.948
31.581
A
A
1
2
12.380
B
B
12
11
3.407
6.685
0.503
-1.976
AA_DG1DG2:DC11DC12_BB
1
1.872
-3.466
30.827
-4.852
-0.582
3.148
33.195
A
A
2
3
3.472
B
B
11
10
3.224
1.982
-0.589
-1.550
AA_DG25CM3:DG10DC11_BB
2
-1.297
2.272
33.113
-3.038
0.818
2.499
26.099
A
A
3
4
20.153
B
B
10
9
3.298
8.919
0.437
-1.854
AA_5CM3DG4:5CM9DG10_BB
3
1.397
-3.157
24.513
-6.333
-0.619
3.159
33.763
A
A
4
5
2.945
B
B
9
8
3.244
1.710
0.483
-1.724
AA_DG4DC5:DG85CM9_BB
4
0.342
-0.589
33.719
-3.240
-0.778
2.908
30.076
A
A
5
6
11.046
B
B
8
7
3.312
5.696
-0.621
-2.024
AA_DC5DC6:DG7DG8_BB
5
-1.652
3.204
29.498
-5.021
0.872
2.846
27.461
C
C
13
14
13.561
D
D
24
23
3.290
6.376
-0.503
-1.686
CC_DG13DG14:DC23DC24_DD
6
-1.899
4.038
26.658
-5.046
0.614
3.074
35.107
C
C
14
15
7.070
D
D
23
22
3.260
4.253
-0.187
-1.309
CC_DG145CM15:DG22DC23_DD
7
1.343
-2.232
34.831
-2.789
0.505
3.061
32.264
C
C
15
16
14.966
D
D
22
21
3.549
8.228
0.452
-1.567
CC_5CM15DG16:5CM21DG22_DD
8
1.130
-2.056
31.204
-4.323
-0.608
3.106
31.713
C
C
16
17
3.450
D
D
21
20
3.193
1.884
0.639
-1.571
CC_DG16DC17:DG205CM21_DD
9
0.492
-0.901
31.654
-3.209
-1.083
2.966
30.652
C
C
17
18
7.724
D
D
20
19
3.246
4.071
-0.570
-1.942
CC_DC17DC18:DG19DG20_DD
10
0.027
-0.050
30.386
-4.440
1.083
2.657
25.559
E
E
25
26
16.066
F
F
36
35
3.262
6.984
-0.780
-2.110
EE_DG25DG26:DC35DC36_FF
11
-4.426
10.183
24.206
-6.619
0.590
2.992
35.551
E
E
26
27
10.215
F
F
35
34
3.299
6.207
-0.381
-1.515
EE_DG265CM27:DG34DC35_FF
12
0.259
-0.426
35.021
-3.360
0.660
2.662
30.431
E
E
27
28
21.356
F
F
34
33
3.543
10.967
0.421
-1.817
EE_5CM27DG28:5CM33DG34_FF
13
-0.777
1.513
28.419
-5.618
-0.955
3.003
33.590
E
E
28
29
7.610
F
F
33
32
3.241
4.384
0.561
-1.853
EE_DG28DC29:DG325CM33_FF
14
1.667
-2.893
33.270
-3.895
-0.708
2.833
29.206
E
E
29
30
11.611
F
F
32
31
3.249
5.816
-0.678
-1.942
EE_DC29DC30:DG31DG32_FF
15
-1.252
2.499
28.607
-5.039
1.089
3.323
29.084
G
G
37
38
8.799
H
H
48
47
3.544
4.385
0.591
-1.565
GG_DG37DG38:DC47DC48_HH
16
4.474
-8.976
28.416
-4.137
-0.134
3.372
38.786
G
G
38
39
-1.981
H
H
47
46
3.364
-1.314
-0.258
-1.079
GG_DG385CM39:DG46DC47_HH
17
2.753
-4.149
38.671
-1.459
0.735
2.729
25.170
G
G
39
40
14.130
H
H
46
45
2.864
6.098
0.013
-0.220
GG_5CM39DG40:5CM45DG46_HH
18
-0.161
0.372
24.432
-2.059
-0.070
3.387
34.353
G
G
40
41
-1.017
H
H
45
44
3.402
-0.600
0.204
-1.012
GG_DG40DC41:DG445CM45_HH
19
-3.165
5.367
34.206
-1.616
-0.859
3.278
33.328
G
G
41
42
8.312
H
H
44
43
3.431
4.744
-0.691
-1.232
GG_DC41DC42:DG43DG44_HH
20
-3.336
5.845
32.834
-2.964
0.631
software
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2001-06-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
Crystal structure of the B-DNA hexamer GGCGCC resolved to 2.0 angstrom resolution
Crystal structure of GGBr5CGBr5CC
Multi-conformation crystal structure of GGm5CGm5CC
Multi-Conformation Crystal Structure of GGBr5CGCC
RCSB
Y
RCSB
2001-04-18
REL
REL
HOH
water
HOH
49
2
HOH
HOH
49
A
HOH
50
2
HOH
HOH
50
A
HOH
51
2
HOH
HOH
51
A
HOH
52
2
HOH
HOH
52
A
HOH
53
2
HOH
HOH
53
A
HOH
54
2
HOH
HOH
54
A
HOH
55
2
HOH
HOH
55
A
HOH
56
2
HOH
HOH
56
A
HOH
57
2
HOH
HOH
57
A
HOH
58
2
HOH
HOH
58
A
HOH
59
2
HOH
HOH
59
A
HOH
94
2
HOH
HOH
94
A
HOH
122
2
HOH
HOH
122
A
HOH
139
2
HOH
HOH
139
A
HOH
146
2
HOH
HOH
146
A
HOH
147
2
HOH
HOH
147
A
HOH
159
2
HOH
HOH
159
A
HOH
63
2
HOH
HOH
63
B
HOH
64
2
HOH
HOH
64
B
HOH
65
2
HOH
HOH
65
B
HOH
66
2
HOH
HOH
66
B
HOH
67
2
HOH
HOH
67
B
HOH
68
2
HOH
HOH
68
B
HOH
69
2
HOH
HOH
69
B
HOH
70
2
HOH
HOH
70
B
HOH
71
2
HOH
HOH
71
B
HOH
72
2
HOH
HOH
72
B
HOH
73
2
HOH
HOH
73
B
HOH
74
2
HOH
HOH
74
B
HOH
145
2
HOH
HOH
145
B
HOH
148
2
HOH
HOH
148
B
HOH
62
2
HOH
HOH
62
C
HOH
75
2
HOH
HOH
75
C
HOH
76
2
HOH
HOH
76
C
HOH
77
2
HOH
HOH
77
C
HOH
78
2
HOH
HOH
78
C
HOH
79
2
HOH
HOH
79
C
HOH
80
2
HOH
HOH
80
C
HOH
81
2
HOH
HOH
81
C
HOH
82
2
HOH
HOH
82
C
HOH
83
2
HOH
HOH
83
C
HOH
84
2
HOH
HOH
84
C
HOH
86
2
HOH
HOH
86
C
HOH
88
2
HOH
HOH
88
C
HOH
135
2
HOH
HOH
135
C
HOH
138
2
HOH
HOH
138
C
HOH
149
2
HOH
HOH
149
C
HOH
150
2
HOH
HOH
150
C
HOH
151
2
HOH
HOH
151
C
HOH
152
2
HOH
HOH
152
C
HOH
60
2
HOH
HOH
60
D
HOH
61
2
HOH
HOH
61
D
HOH
89
2
HOH
HOH
89
D
HOH
90
2
HOH
HOH
90
D
HOH
91
2
HOH
HOH
91
D
HOH
92
2
HOH
HOH
92
D
HOH
93
2
HOH
HOH
93
D
HOH
95
2
HOH
HOH
95
D
HOH
96
2
HOH
HOH
96
D
HOH
97
2
HOH
HOH
97
D
HOH
98
2
HOH
HOH
98
D
HOH
99
2
HOH
HOH
99
D
HOH
123
2
HOH
HOH
123
D
HOH
136
2
HOH
HOH
136
D
HOH
137
2
HOH
HOH
137
D
HOH
144
2
HOH
HOH
144
D
HOH
153
2
HOH
HOH
153
D
HOH
154
2
HOH
HOH
154
D
HOH
160
2
HOH
HOH
160
D
HOH
85
2
HOH
HOH
85
E
HOH
100
2
HOH
HOH
100
E
HOH
101
2
HOH
HOH
101
E
HOH
102
2
HOH
HOH
102
E
HOH
103
2
HOH
HOH
103
E
HOH
104
2
HOH
HOH
104
E
HOH
105
2
HOH
HOH
105
E
HOH
106
2
HOH
HOH
106
E
HOH
107
2
HOH
HOH
107
E
HOH
108
2
HOH
HOH
108
E
HOH
109
2
HOH
HOH
109
E
HOH
110
2
HOH
HOH
110
E
HOH
111
2
HOH
HOH
111
E
HOH
128
2
HOH
HOH
128
E
HOH
155
2
HOH
HOH
155
E
HOH
156
2
HOH
HOH
156
E
HOH
157
2
HOH
HOH
157
E
HOH
161
2
HOH
HOH
161
E
HOH
112
2
HOH
HOH
112
F
HOH
113
2
HOH
HOH
113
F
HOH
114
2
HOH
HOH
114
F
HOH
115
2
HOH
HOH
115
F
HOH
116
2
HOH
HOH
116
F
HOH
117
2
HOH
HOH
117
F
HOH
118
2
HOH
HOH
118
F
HOH
119
2
HOH
HOH
119
F
HOH
120
2
HOH
HOH
120
F
HOH
121
2
HOH
HOH
121
F
HOH
140
2
HOH
HOH
140
F
HOH
141
2
HOH
HOH
141
F
HOH
142
2
HOH
HOH
142
F
HOH
162
2
HOH
HOH
162
F
HOH
124
2
HOH
HOH
124
G
HOH
125
2
HOH
HOH
125
G
HOH
126
2
HOH
HOH
126
G
HOH
127
2
HOH
HOH
127
G
HOH
129
2
HOH
HOH
129
G
HOH
143
2
HOH
HOH
143
G
HOH
87
2
HOH
HOH
87
H
HOH
130
2
HOH
HOH
130
H
HOH
131
2
HOH
HOH
131
H
HOH
132
2
HOH
HOH
132
H
HOH
133
2
HOH
HOH
133
H
HOH
134
2
HOH
HOH
134
H
HOH
158
2
HOH
HOH
158
H
HOH
163
2
HOH
HOH
163
H
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
+C
3
n
3
5CM
3
A
G
4
n
4
DG
4
A
C
5
n
5
DC
5
A
C
6
n
6
DC
6
A
G
7
n
1
DG
7
B
G
8
n
2
DG
8
B
+C
9
n
3
5CM
9
B
G
10
n
4
DG
10
B
C
11
n
5
DC
11
B
C
12
n
6
DC
12
B
G
13
n
1
DG
13
C
G
14
n
2
DG
14
C
+C
15
n
3
5CM
15
C
G
16
n
4
DG
16
C
C
17
n
5
DC
17
C
C
18
n
6
DC
18
C
G
19
n
1
DG
19
D
G
20
n
2
DG
20
D
+C
21
n
3
5CM
21
D
G
22
n
4
DG
22
D
C
23
n
5
DC
23
D
C
24
n
6
DC
24
D
G
25
n
1
DG
25
E
G
26
n
2
DG
26
E
+C
27
n
3
5CM
27
E
G
28
n
4
DG
28
E
C
29
n
5
DC
29
E
C
30
n
6
DC
30
E
G
31
n
1
DG
31
F
G
32
n
2
DG
32
F
+C
33
n
3
5CM
33
F
G
34
n
4
DG
34
F
C
35
n
5
DC
35
F
C
36
n
6
DC
36
F
G
37
n
1
DG
37
G
G
38
n
2
DG
38
G
+C
39
n
3
5CM
39
G
G
40
n
4
DG
40
G
C
41
n
5
DC
41
G
C
42
n
6
DC
42
G
G
43
n
1
DG
43
H
G
44
n
2
DG
44
H
+C
45
n
3
5CM
45
H
G
46
n
4
DG
46
H
C
47
n
5
DC
47
H
C
48
n
6
DC
48
H
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
A
5CM
3
A
5CM
3
DC
B
5CM
9
B
5CM
3
DC
C
5CM
15
C
5CM
3
DC
D
5CM
21
D
5CM
3
DC
E
5CM
27
E
5CM
3
DC
F
5CM
33
F
5CM
3
DC
G
5CM
39
G
5CM
3
DC
H
5CM
45
H
5CM
3
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.204
0.185
0.189
0.189
1.9
20.0
698
14930
14930
Random
1
0.0
0.0
MOLECULAR REPLACEMENT
G.Parkinson, J.Vojtechovsky, L.Clowney, A.T.Brunger, H.M.Berman
1.9
20.0
115
1083
8
960
0
0.003
0.81
43.3
1.9
99.0
1IH4
14957
14957
0.0
0.0
0.042
1
39.1
7.2
99.0
0.407
1.90
1.97
4.0
96.5
refinement
CNS
data scaling
SCALEPACK
phasing
CNS
Multi-Conformation Crystal Structure of GGm5CGCC
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
covale
1.608
both
A
DG
2
A
O3'
DG
2
1_555
A
5CM
3
A
P
5CM
3
1_555
covale
1.607
both
A
5CM
3
A
O3'
5CM
3
1_555
A
DG
4
A
P
DG
4
1_555
covale
1.606
both
B
DG
8
B
O3'
DG
2
1_555
B
5CM
9
B
P
5CM
3
1_555
covale
1.605
both
B
5CM
9
B
O3'
5CM
3
1_555
B
DG
10
B
P
DG
4
1_555
covale
1.607
both
C
DG
14
C
O3'
DG
2
1_555
C
5CM
15
C
P
5CM
3
1_555
covale
1.604
both
C
5CM
15
C
O3'
5CM
3
1_555
C
DG
16
C
P
DG
4
1_555
covale
1.607
both
D
DG
20
D
O3'
DG
2
1_555
D
5CM
21
D
P
5CM
3
1_555
covale
1.603
both
D
5CM
21
D
O3'
5CM
3
1_555
D
DG
22
D
P
DG
4
1_555
covale
1.606
both
E
DG
26
E
O3'
DG
2
1_555
E
5CM
27
E
P
5CM
3
1_555
covale
1.604
both
E
5CM
27
E
O3'
5CM
3
1_555
E
DG
28
E
P
DG
4
1_555
covale
1.606
both
F
DG
32
F
O3'
DG
2
1_555
F
5CM
33
F
P
5CM
3
1_555
covale
1.606
both
F
5CM
33
F
O3'
5CM
3
1_555
F
DG
34
F
P
DG
4
1_555
covale
1.605
both
G
DG
38
G
O3'
DG
2
1_555
G
5CM
39
G
P
5CM
3
1_555
covale
1.608
both
G
5CM
39
G
O3'
5CM
3
1_555
G
DG
40
G
P
DG
4
1_555
covale
1.605
both
H
DG
44
H
O3'
DG
2
1_555
H
5CM
45
H
P
5CM
3
1_555
covale
1.610
both
H
5CM
45
H
O3'
5CM
3
1_555
H
DG
46
H
P
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
N3
5CM
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
N4
5CM
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
O2
5CM
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
5CM
9
B
N3
5CM
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
5CM
9
B
O2
5CM
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
5CM
9
B
N4
5CM
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
1
1_555
hydrog
DC-DG PAIR
A
DC
6
A
O2
DC
6
1_555
D
DG
19
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N1
DG
1
1_555
D
DC
24
D
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N2
DG
1
1_555
D
DC
24
D
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
O6
DG
1
1_555
D
DC
24
D
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N1
DG
2
1_555
D
DC
23
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N2
DG
2
1_555
D
DC
23
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
O6
DG
2
1_555
D
DC
23
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
5CM
15
C
N3
5CM
3
1_555
D
DG
22
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
5CM
15
C
N4
5CM
3
1_555
D
DG
22
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
5CM
15
C
O2
5CM
3
1_555
D
DG
22
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N1
DG
4
1_555
D
5CM
21
D
N3
5CM
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N2
DG
4
1_555
D
5CM
21
D
O2
5CM
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
O6
DG
4
1_555
D
5CM
21
D
N4
5CM
3
1_555
hydrog
WATSON-CRICK
C
DC
17
C
N3
DC
5
1_555
D
DG
20
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
17
C
N4
DC
5
1_555
D
DG
20
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
17
C
O2
DC
5
1_555
D
DG
20
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N3
DC
6
1_555
D
DG
19
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N4
DC
6
1_555
D
DG
19
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
O2
DC
6
1_555
D
DG
19
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
E
DG
25
E
N1
DG
1
1_555
F
DC
36
F
N3
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
25
E
N2
DG
1
1_555
F
DC
36
F
O2
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
25
E
O6
DG
1
1_555
F
DC
36
F
N4
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N1
DG
2
1_555
F
DC
35
F
N3
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N2
DG
2
1_555
F
DC
35
F
O2
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
O6
DG
2
1_555
F
DC
35
F
N4
DC
5
1_555
hydrog
WATSON-CRICK
E
5CM
27
E
N3
5CM
3
1_555
F
DG
34
F
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
5CM
27
E
N4
5CM
3
1_555
F
DG
34
F
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
5CM
27
E
O2
5CM
3
1_555
F
DG
34
F
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N1
DG
4
1_555
F
5CM
33
F
N3
5CM
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N2
DG
4
1_555
F
5CM
33
F
O2
5CM
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
O6
DG
4
1_555
F
5CM
33
F
N4
5CM
3
1_555
hydrog
WATSON-CRICK
E
DC
29
E
N3
DC
5
1_555
F
DG
32
F
N1
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
29
E
N4
DC
5
1_555
F
DG
32
F
O6
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
29
E
O2
DC
5
1_555
F
DG
32
F
N2
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
30
E
N3
DC
6
1_555
F
DG
31
F
N1
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
30
E
N4
DC
6
1_555
F
DG
31
F
O6
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
30
E
O2
DC
6
1_555
F
DG
31
F
N2
DG
1
1_555
hydrog
WATSON-CRICK
G
DG
37
G
N1
DG
1
1_555
H
DC
48
H
N3
DC
6
1_555
hydrog
WATSON-CRICK
G
DG
37
G
N2
DG
1
1_555
H
DC
48
H
O2
DC
6
1_555
hydrog
WATSON-CRICK
G
DG
37
G
O6
DG
1
1_555
H
DC
48
H
N4
DC
6
1_555
hydrog
WATSON-CRICK
G
DG
38
G
N1
DG
2
1_555
H
DC
47
H
N3
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
38
G
N2
DG
2
1_555
H
DC
47
H
O2
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
38
G
O6
DG
2
1_555
H
DC
47
H
N4
DC
5
1_555
hydrog
WATSON-CRICK
G
5CM
39
G
N3
5CM
3
1_555
H
DG
46
H
N1
DG
4
1_555
hydrog
WATSON-CRICK
G
5CM
39
G
N4
5CM
3
1_555
H
DG
46
H
O6
DG
4
1_555
hydrog
WATSON-CRICK
G
5CM
39
G
O2
5CM
3
1_555
H
DG
46
H
N2
DG
4
1_555
hydrog
WATSON-CRICK
G
DG
40
G
N1
DG
4
1_555
H
5CM
45
H
N3
5CM
3
1_555
hydrog
WATSON-CRICK
G
DG
40
G
N2
DG
4
1_555
H
5CM
45
H
O2
5CM
3
1_555
hydrog
WATSON-CRICK
G
DG
40
G
O6
DG
4
1_555
H
5CM
45
H
N4
5CM
3
1_555
hydrog
WATSON-CRICK
G
DC
41
G
N3
DC
5
1_555
H
DG
44
H
N1
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
41
G
N4
DC
5
1_555
H
DG
44
H
O6
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
41
G
O2
DC
5
1_555
H
DG
44
H
N2
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
42
G
N3
DC
6
1_555
H
DG
43
H
N1
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
42
G
N4
DC
6
1_555
H
DG
43
H
O6
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
42
G
O2
DC
6
1_555
H
DG
43
H
N2
DG
1
1_555
DNA
B to A DNA transition, DNA transition, structural transition, DNA
1IH4
PDB
1
1IH4
1
6
1IH4
1
6
1IH4
A
1
1
6
7
12
1IH4
7
12
1IH4
B
1
1
6
13
18
1IH4
13
18
1IH4
C
1
1
6
19
24
1IH4
19
24
1IH4
D
1
1
6
25
30
1IH4
25
30
1IH4
E
1
1
6
31
36
1IH4
31
36
1IH4
F
1
1
6
37
42
1IH4
37
42
1IH4
G
1
1
6
43
48
1IH4
43
48
1IH4
H
1
1
6
154
P 32 2 1