1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Shenkarev, Z.O.
Balasheva, T.A.
Efremov, R.G.
Yakimenko, Z.A.
Ovchinnikova, T.V.
Raap, J.
Arseniev, A.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C4 H9 N O2
103.120
n
ALPHA-AMINOISOBUTYRIC ACID
L-peptide linking
C5 H11 N O2
117.146
D-ISOVALINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O3
131.130
n
4-HYDROXYPROLINE
HYDROXYPROLINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H13 N O
151.206
n
L-PHENYLALANINOL
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
US
Biophys.J.
BIOJAU
0030
0006-3495
82
762
10.1016/S0006-3495(02)75438-6
11806918
Spatial Structure of Zervamicin Iib Bound to Dpc Micelles: Implications for Voltage-Gating.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
1823.183
ZERVAMICIN IIB
1
nat
polymer
no
yes
(ACE)WIQ(DIV)IT(AIB)L(AIB)(HYP)Q(AIB)(HYP)(AIB)P(PHL)
XWIQVITALAPQAPAPF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
118885
EMERICELLOPSIS SALMOSYNNEMATA
336 IMI 58330
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
1
0
2002-02-13
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E
SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL
SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB
SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN
SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES
CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C
CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B
CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A
RCSB
Y
RCSB
2001-04-19
REL
REL
ZERVAMICIN IIB IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL
FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES.
HERE, ZERVAMICIN IS REPRESENTED BY THE SEQUENCE (SEQRES)
Antibiotic
ZERVAMICIN IS A HEXADECAMERIC HELICAL PEPTIDE.
THE N-TERM IS ACETYLATED (RESIDUE 0)
Zervamicin IIB
Peptaibol
THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES.
target function
100
20
2D NOESY
DQF-COSY
TOCSY
0
6.8
1ATM ATM
303
K
536 NOESY PEAKS, 174 UPPER CONSTRAINTS 29 ADDITIONAL LOWER CONSTRAINTS 60 ADDITIONAL CONSTRAINTS FOR HYDROGEN BONDS 11 ANGLE CONSTRAINTS
SIMULATED ANNELING. ENERGY MINIMISATION.
1
1.8 MM ZRV-IIB
70MM D-DPC
90% H2O, 10% D2O
BIOSYM TECHNOLOGIES
refinement
DISCOVER 1.2
structure solution
VNMR 5.3
structure solution
XEASY 2.1
structure solution
DYANA 1.5
600
Varian
UNITY
ACE
0
n
1
ACE
0
A
TRP
1
n
2
TRP
1
A
ILE
2
n
3
ILE
2
A
GLN
3
n
4
GLN
3
A
DIV
4
n
5
DIV
4
A
ILE
5
n
6
ILE
5
A
THR
6
n
7
THR
6
A
AIB
7
n
8
AIB
7
A
LEU
8
n
9
LEU
8
A
AIB
9
n
10
AIB
9
A
HYP
10
n
11
HYP
10
A
GLN
11
n
12
GLN
11
A
AIB
12
n
13
AIB
12
A
HYP
13
n
14
HYP
13
A
AIB
14
n
15
AIB
14
A
PRO
15
n
16
PRO
15
A
PHL
16
n
17
PHL
16
A
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
GLN
AIB
11
12
149.78
6
A
A
GLN
AIB
11
12
149.34
9
A
A
GLN
AIB
11
12
149.48
10
A
A
GLN
AIB
11
12
149.48
11
A
A
GLN
AIB
11
12
149.46
12
A
A
GLN
AIB
11
12
149.73
13
A
A
GLN
AIB
11
12
149.86
14
A
A
GLN
AIB
11
12
149.72
15
A
A
GLN
AIB
11
12
149.55
19
A
A
GLN
AIB
11
12
149.24
ZERVAMICIN IIB
NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles
1
N
N
A
TRP
1
A
TRP
2
HELX_P
A
AIB
14
A
AIB
15
1
1
14
covale
1.343
A
ACE
0
A
C
ACE
1
1_555
A
TRP
1
A
N
TRP
2
1_555
covale
1.356
A
GLN
3
A
C
GLN
4
1_555
A
DIV
4
A
N
DIV
5
1_555
covale
1.357
A
DIV
4
A
C
DIV
5
1_555
A
ILE
5
A
N
ILE
6
1_555
covale
1.354
A
THR
6
A
C
THR
7
1_555
A
AIB
7
A
N
AIB
8
1_555
covale
1.346
A
AIB
7
A
C
AIB
8
1_555
A
LEU
8
A
N
LEU
9
1_555
covale
1.361
A
LEU
8
A
C
LEU
9
1_555
A
AIB
9
A
N
AIB
10
1_555
covale
1.379
A
AIB
9
A
C
AIB
10
1_555
A
HYP
10
A
N
HYP
11
1_555
covale
1.352
A
HYP
10
A
C
HYP
11
1_555
A
GLN
11
A
N
GLN
12
1_555
covale
1.355
A
GLN
11
A
C
GLN
12
1_555
A
AIB
12
A
N
AIB
13
1_555
covale
1.378
A
AIB
12
A
C
AIB
13
1_555
A
HYP
13
A
N
HYP
14
1_555
covale
1.361
A
HYP
13
A
C
HYP
14
1_555
A
AIB
14
A
N
AIB
15
1_555
covale
1.375
A
AIB
14
A
C
AIB
15
1_555
A
PRO
15
A
N
PRO
16
1_555
covale
1.347
A
PRO
15
A
C
PRO
16
1_555
A
PHL
16
A
N
PHL
17
1_555
ANTIBIOTIC
ZREVAMICIN, PEPTAIBOL ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC BENT HELIX, ANTIBIOTIC
NOR01092
NOR
1
NOR01092
0
16
1IH9
0
16
NOR01092
A
1
1
17
1
P 1