1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Shenkarev, Z.O. Balasheva, T.A. Efremov, R.G. Yakimenko, Z.A. Ovchinnikova, T.V. Raap, J. Arseniev, A.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C2 H4 O 44.053 ACETYL GROUP non-polymer C4 H9 N O2 103.120 n ALPHA-AMINOISOBUTYRIC ACID L-peptide linking C5 H11 N O2 117.146 D-ISOVALINE D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O3 131.130 n 4-HYDROXYPROLINE HYDROXYPROLINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H13 N O 151.206 n L-PHENYLALANINOL L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking US Biophys.J. BIOJAU 0030 0006-3495 82 762 10.1016/S0006-3495(02)75438-6 11806918 Spatial Structure of Zervamicin Iib Bound to Dpc Micelles: Implications for Voltage-Gating. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 1823.183 ZERVAMICIN IIB 1 nat polymer no yes (ACE)WIQ(DIV)IT(AIB)L(AIB)(HYP)Q(AIB)(HYP)(AIB)P(PHL) XWIQVITALAPQAPAPF A polypeptide(L) n n n n n n n n n n n n n n n n n sample 118885 EMERICELLOPSIS SALMOSYNNEMATA 336 IMI 58330 repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other 1 0 2002-02-13 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-12-12 CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A RCSB Y RCSB 2001-04-19 REL REL ZERVAMICIN IIB IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES. HERE, ZERVAMICIN IS REPRESENTED BY THE SEQUENCE (SEQRES) Antibiotic ZERVAMICIN IS A HEXADECAMERIC HELICAL PEPTIDE. THE N-TERM IS ACETYLATED (RESIDUE 0) Zervamicin IIB Peptaibol THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES. target function 100 20 2D NOESY DQF-COSY TOCSY 0 6.8 1ATM ATM 303 K 536 NOESY PEAKS, 174 UPPER CONSTRAINTS 29 ADDITIONAL LOWER CONSTRAINTS 60 ADDITIONAL CONSTRAINTS FOR HYDROGEN BONDS 11 ANGLE CONSTRAINTS SIMULATED ANNELING. ENERGY MINIMISATION. 1 1.8 MM ZRV-IIB 70MM D-DPC 90% H2O, 10% D2O BIOSYM TECHNOLOGIES refinement DISCOVER 1.2 structure solution VNMR 5.3 structure solution XEASY 2.1 structure solution DYANA 1.5 600 Varian UNITY ACE 0 n 1 ACE 0 A TRP 1 n 2 TRP 1 A ILE 2 n 3 ILE 2 A GLN 3 n 4 GLN 3 A DIV 4 n 5 DIV 4 A ILE 5 n 6 ILE 5 A THR 6 n 7 THR 6 A AIB 7 n 8 AIB 7 A LEU 8 n 9 LEU 8 A AIB 9 n 10 AIB 9 A HYP 10 n 11 HYP 10 A GLN 11 n 12 GLN 11 A AIB 12 n 13 AIB 12 A HYP 13 n 14 HYP 13 A AIB 14 n 15 AIB 14 A PRO 15 n 16 PRO 15 A PHL 16 n 17 PHL 16 A author_and_software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A GLN AIB 11 12 149.78 6 A A GLN AIB 11 12 149.34 9 A A GLN AIB 11 12 149.48 10 A A GLN AIB 11 12 149.48 11 A A GLN AIB 11 12 149.46 12 A A GLN AIB 11 12 149.73 13 A A GLN AIB 11 12 149.86 14 A A GLN AIB 11 12 149.72 15 A A GLN AIB 11 12 149.55 19 A A GLN AIB 11 12 149.24 ZERVAMICIN IIB NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles 1 N N A TRP 1 A TRP 2 HELX_P A AIB 14 A AIB 15 1 1 14 covale 1.343 A ACE 0 A C ACE 1 1_555 A TRP 1 A N TRP 2 1_555 covale 1.356 A GLN 3 A C GLN 4 1_555 A DIV 4 A N DIV 5 1_555 covale 1.357 A DIV 4 A C DIV 5 1_555 A ILE 5 A N ILE 6 1_555 covale 1.354 A THR 6 A C THR 7 1_555 A AIB 7 A N AIB 8 1_555 covale 1.346 A AIB 7 A C AIB 8 1_555 A LEU 8 A N LEU 9 1_555 covale 1.361 A LEU 8 A C LEU 9 1_555 A AIB 9 A N AIB 10 1_555 covale 1.379 A AIB 9 A C AIB 10 1_555 A HYP 10 A N HYP 11 1_555 covale 1.352 A HYP 10 A C HYP 11 1_555 A GLN 11 A N GLN 12 1_555 covale 1.355 A GLN 11 A C GLN 12 1_555 A AIB 12 A N AIB 13 1_555 covale 1.378 A AIB 12 A C AIB 13 1_555 A HYP 13 A N HYP 14 1_555 covale 1.361 A HYP 13 A C HYP 14 1_555 A AIB 14 A N AIB 15 1_555 covale 1.375 A AIB 14 A C AIB 15 1_555 A PRO 15 A N PRO 16 1_555 covale 1.347 A PRO 15 A C PRO 16 1_555 A PHL 16 A N PHL 17 1_555 ANTIBIOTIC ZREVAMICIN, PEPTAIBOL ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC BENT HELIX, ANTIBIOTIC NOR01092 NOR 1 NOR01092 0 16 1IH9 0 16 NOR01092 A 1 1 17 1 P 1