0.018587
0.000000
0.006729
0.000000
0.051546
0.000000
0.000000
0.000000
0.021139
0.000000
0.000000
0.000000
Cruse, W.B.
Saludjian, P.
Neuman, A.
Prange, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
109.90
90.00
53.800
19.400
50.310
C9 H12 Br N2 O8 P
387.078
n
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
H18 N6 Rh 3
205.089
RHODIUM HEXAMINE ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
BR
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
O
N
35
N
P
N
36
N
O
N
37
N
O
N
38
N
O
N
39
N
C
N
40
R
C
N
41
N
O
N
42
S
C
N
43
N
O
N
44
R
C
N
45
N
O
N
46
R
C
N
47
N
N
N
48
N
C
N
49
N
O
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
C
N
54
N
C
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
CL
N
70
N
O
N
71
N
P
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
C
N
76
R
C
N
77
N
O
N
78
S
C
N
79
N
O
N
80
R
C
N
81
N
O
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
RH
N
112
N
N
N
113
N
N
N
114
N
N
N
115
N
N
N
116
N
N
N
117
N
N
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
O
N
137
N
P
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
C
N
142
R
C
N
143
N
O
N
144
S
C
N
145
N
O
N
146
R
C
N
147
N
O
N
148
R
C
N
149
N
N
N
150
N
C
N
151
N
O
N
152
N
N
N
153
N
C
N
154
N
O
N
155
N
C
N
156
N
C
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
Y
95
N
sing
Y
96
N
sing
Y
97
N
doub
N
98
N
sing
Y
99
N
sing
N
100
N
sing
Y
101
N
doub
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
1609
1613
10.1107/S0907444901012318
11679725
Destabilizing effect of a fluorouracil extra base in a hybrid RNA duplex compared with bromo and chloro analogues.
2001
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
91
4160
4164
Structure of a Mispaired RNA Double Helix at 1.6 A Resolution and Implications for the Prediction of RNA Secondary Structure
1994
10.2210/pdb1iha/pdb
pdb_00001iha
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
siliciu(111) curvated crystal
plus multi-layer curvated mirror
IMAGE PLATE
1995-03-05
MARRESEARCH
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
DW32
LURE
SYNCHROTRON
LURE BEAMLINE DW32
2887.600
5'-R(*GP*CP*UP*UP*CP*GP*GP*C)-D(P*(BRU))-3'
2
syn
polymer
205.089
RHODIUM HEXAMINE ION
2
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
18.015
water
61
nat
water
no
yes
GCUUCGGC(BRU)
GCUUCGGCU
A,B
polydeoxyribonucleotide/polyribonucleotide hybrid
n
n
n
n
n
n
n
n
n
1
2.18
43.70
VAPOR DIFFUSION, SITTING DROP
6.5
MPD, Rhodium hexammine, lithium cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
MPD
1
Rhodium hexammine
1
lithium cacodylate
1
MPD
2
3.275
1
19
A
1
B
8
0.005
A_G1:C8_B
1
-13.129
-0.380
0.210
-0.193
1.600
1
19
A
2
B
7
-1.406
A_C2:G7_B
2
-11.076
0.042
0.105
-0.203
5.165
28
A
3
B
6
-2.790
A_U3:G6_B
3
-8.150
2.265
-0.065
-0.544
1.796
A
4
B
5
-41.940
A_U4:C5_B
4
2.564
-0.621
0.037
0.186
8.015
A
5
B
4
-41.341
A_C5:U4_B
5
-5.468
0.672
-0.338
0.148
1.264
28
A
6
B
3
-1.960
A_G6:U3_B
6
-9.432
-2.305
-0.201
-0.610
-5.217
1
19
A
7
B
2
-0.148
A_G7:C2_B
7
-13.130
-0.163
-0.066
-0.157
-3.848
1
19
A
8
B
1
-0.711
A_C8:G1_B
8
-4.159
0.239
0.209
-0.174
3.229
34.112
A
A
1
2
6.389
B
B
8
7
3.452
3.740
-0.184
-1.957
AA_G1C2:G7C8_BB
1
-1.492
2.550
33.880
-3.945
0.071
3.046
40.350
A
A
2
3
7.254
B
B
7
6
3.227
4.988
0.098
-1.330
AA_C2U3:G6G7_BB
2
2.794
-4.063
39.959
-2.470
0.161
3.351
21.720
A
A
3
4
18.284
B
B
6
5
3.464
6.738
-3.924
-1.965
AA_U3U4:C5G6_BB
3
-4.022
10.914
20.269
-8.086
8.700
3.091
39.145
A
A
4
5
9.415
B
B
5
4
3.425
6.283
-0.079
-1.885
AA_U4C5:U4C5_BB
4
0.908
-1.361
38.646
-3.568
0.227
2.356
27.891
A
A
5
6
26.633
B
B
4
3
3.472
12.403
3.225
-1.667
AA_C5G6:U3U4_BB
5
-0.319
0.685
25.028
-6.245
-6.763
3.213
40.138
A
A
6
7
8.933
B
B
3
2
3.508
6.106
0.176
-1.658
AA_G6G7:C2U3_BB
6
-2.344
3.430
39.624
-3.135
-0.532
3.268
34.302
A
A
7
8
2.335
B
B
2
1
3.349
1.376
0.102
-1.887
AA_G7C8:G1C2_BB
7
-1.088
1.846
34.259
-3.418
-0.345
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-05-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2023-08-16
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
previous refinement using xplor
at medium resolution
a chloro-uracil replaces the bromo-uracil
a fluoro-uracil replaces the bromo-uracil
a fluoro-uracil replaces the bromo-uracil
and iridium hexammine replaces the rhodium hexammine
RCSB
Y
RCSB
2001-04-19
REL
REL
RHD
RHODIUM HEXAMINE ION
CL
CHLORIDE ION
HOH
water
phosphoramidite method
sample
165D
165D from pdb
PDB
experimental model
RHD
11
2
RHD
RHD
11
A
RHD
12
2
RHD
RHD
12
A
CL
32
3
CL
CL
32
A
CL
31
3
CL
CL
31
B
HOH
101
4
HOH
HOH
101
A
HOH
102
4
HOH
HOH
102
A
HOH
103
4
HOH
HOH
103
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
106
4
HOH
HOH
106
A
HOH
107
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
111
4
HOH
HOH
111
A
HOH
113
4
HOH
HOH
113
A
HOH
114
4
HOH
HOH
114
A
HOH
115
4
HOH
HOH
115
A
HOH
116
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
119
4
HOH
HOH
119
A
HOH
122
4
HOH
HOH
122
A
HOH
125
4
HOH
HOH
125
A
HOH
128
4
HOH
HOH
128
A
HOH
129
4
HOH
HOH
129
A
HOH
131
4
HOH
HOH
131
A
HOH
132
4
HOH
HOH
132
A
HOH
134
4
HOH
HOH
134
A
HOH
135
4
HOH
HOH
135
A
HOH
137
4
HOH
HOH
137
A
HOH
138
4
HOH
HOH
138
A
HOH
139
4
HOH
HOH
139
A
HOH
142
4
HOH
HOH
142
A
HOH
143
4
HOH
HOH
143
A
HOH
144
4
HOH
HOH
144
A
HOH
145
4
HOH
HOH
145
A
HOH
146
4
HOH
HOH
146
A
HOH
151
4
HOH
HOH
151
A
HOH
152
4
HOH
HOH
152
A
HOH
155
4
HOH
HOH
155
A
HOH
158
4
HOH
HOH
158
A
HOH
109
4
HOH
HOH
109
B
HOH
110
4
HOH
HOH
110
B
HOH
112
4
HOH
HOH
112
B
HOH
120
4
HOH
HOH
120
B
HOH
121
4
HOH
HOH
121
B
HOH
123
4
HOH
HOH
123
B
HOH
124
4
HOH
HOH
124
B
HOH
126
4
HOH
HOH
126
B
HOH
127
4
HOH
HOH
127
B
HOH
130
4
HOH
HOH
130
B
HOH
133
4
HOH
HOH
133
B
HOH
136
4
HOH
HOH
136
B
HOH
140
4
HOH
HOH
140
B
HOH
141
4
HOH
HOH
141
B
HOH
147
4
HOH
HOH
147
B
HOH
148
4
HOH
HOH
148
B
HOH
149
4
HOH
HOH
149
B
HOH
150
4
HOH
HOH
150
B
HOH
153
4
HOH
HOH
153
B
HOH
154
4
HOH
HOH
154
B
HOH
156
4
HOH
HOH
156
B
HOH
157
4
HOH
HOH
157
B
HOH
159
4
HOH
HOH
159
B
HOH
160
4
HOH
HOH
160
B
HOH
161
4
HOH
HOH
161
B
G
1
n
1
G
1
A
C
2
n
2
C
2
A
U
3
n
3
U
3
A
U
4
n
4
U
4
A
C
5
n
5
C
5
A
G
6
n
6
G
6
A
G
7
n
7
G
7
A
C
8
n
8
C
8
A
+U
9
n
9
BRU
9
A
G
1
n
1
G
1
B
C
2
n
2
C
2
B
U
3
n
3
U
3
B
U
4
n
4
U
4
B
C
5
n
5
C
5
B
G
6
n
6
G
6
B
G
7
n
7
G
7
B
C
8
n
8
C
8
B
+U
9
n
9
BRU
9
B
author_defined_assembly
2
dimeric
A
BRU
9
A
BRU
9
DU
B
BRU
9
B
BRU
9
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-3.48
0.40
121.90
118.42
A
A
A
N3
C4
C5
C
C
C
2
2
2
N
1
-4.76
0.60
127.00
122.24
A
A
A
C2
N3
C4
U
U
U
3
3
3
N
1
4.33
0.60
114.60
118.93
A
A
A
N3
C4
C5
U
U
U
3
3
3
N
1
-3.85
0.60
121.00
117.15
A
A
A
C6
N1
C2
U
U
U
4
4
4
N
1
5.06
0.60
114.90
119.96
A
A
A
N1
C2
N3
U
U
U
4
4
4
N
1
-5.08
0.70
122.80
117.72
A
A
A
N1
C2
O2
U
U
U
4
4
4
N
1
-5.45
0.60
125.90
120.45
A
A
A
C5
C4
O4
U
U
U
4
4
4
N
1
4.26
0.50
111.50
115.76
A
A
A
C5
C6
N1
G
G
G
6
6
6
N
1
-4.28
0.60
128.60
124.32
A
A
A
C5
C6
O6
G
G
G
6
6
6
N
1
-3.21
0.50
104.30
101.09
A
A
A
C5
N7
C8
G
G
G
7
7
7
N
1
3.82
0.50
119.90
123.72
A
A
A
C2
N3
C4
C
C
C
8
8
8
N
1
-2.71
0.40
121.90
119.19
A
A
A
N3
C4
C5
C
C
C
8
8
8
N
1
9.26
1.20
119.70
128.96
A
A
A
C3'
O3'
P
C
C
BRU
8
8
9
Y
1
-3.71
0.60
125.10
121.39
B
B
B
C6
N1
C2
G
G
G
1
1
1
N
1
4.00
0.60
114.90
118.90
B
B
B
N1
C2
N3
U
U
U
3
3
3
N
1
-6.10
0.70
122.80
116.70
B
B
B
N1
C2
O2
U
U
U
3
3
3
N
1
4.64
0.70
108.50
113.14
B
B
B
O4'
C1'
N1
U
U
U
4
4
4
N
1
-4.69
0.60
125.90
121.21
B
B
B
C5
C4
O4
U
U
U
4
4
4
N
1
3.03
0.50
119.90
122.93
B
B
B
C2
N3
C4
C
C
C
5
5
5
N
1
-4.27
0.40
121.90
117.63
B
B
B
N3
C4
C5
C
C
C
5
5
5
N
1
-4.88
0.80
109.40
104.52
B
B
B
O5'
C5'
C4'
G
G
G
6
6
6
N
1
6.16
1.00
102.60
108.76
B
B
B
C4'
C3'
C2'
C
C
C
8
8
8
N
1
-8.68
1.10
112.00
103.32
B
B
B
N1
C1'
C2'
C
C
C
8
8
8
N
1
-6.42
0.80
108.20
101.78
B
B
B
O4'
C1'
N1
C
C
C
8
8
8
N
1
-12.39
1.20
119.70
107.31
B
B
B
C3'
O3'
P
C
C
BRU
8
8
9
A
Y
1
-8.59
1.20
119.70
111.11
B
B
B
C3'
O3'
P
C
C
BRU
8
8
9
B
Y
1
12.24
1.90
104.00
116.24
B
B
B
O3'
P
O5'
C
BRU
BRU
8
9
9
A
A
Y
1
13.73
1.90
104.00
117.73
B
B
B
O3'
P
O5'
C
BRU
BRU
8
9
9
B
B
Y
1
6.62
1.10
110.50
117.12
B
B
B
O3'
P
OP1
C
BRU
BRU
8
9
9
A
A
Y
1
B
B
C4'
C3'
C
C
8
8
-0.074
0.010
1.521
1.447
N
1
B
B
C2'
O2'
C
C
8
8
-0.084
0.013
1.412
1.328
N
16.3
chain B (iso <B>=11.8) is more agitated than chain A
(iso <B>=18.9)
0.196
0.162
0.167
0.161
1.60
1.75
529
6346
6312
98
random
1
isotropic
THROUGHOUT
2
4
MOLECULAR REPLACEMENT
165D from pdb
personal dictionary from small molecules
1.60
1.75
61
469
19
389
0
0.011
0.035
0.093
0.05
0.191
0.02
0.147
1.75
125
90
0.19
0.02
0.153
1.95
101
90
0.193
0.02
0.162
2.35
135
97
0.197
0.02
0.169
3.05
95
100
0.22
0.02
0.181
9.5
73
100
17.0
1.6
9.5
1IHA
6400
6312
3
4
0.045
0.043
1
21.0
9.0
98
0.141
1.60
1.70
3.8
997
0.138
3
89
data reduction
MOSFLM
data reduction
ROTAVATA
phasing
AMoRE
refinement
SHELXL-97
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
Structure of the Hybrid RNA/DNA R-GCUUCGGC-D[BR]U in Presence of RH(NH3)6+++
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
covale
1.596
both
A
C
8
A
O3'
C
8
1_555
A
BRU
9
A
P
BRU
9
1_555
covale
1.559
both
B
B
C
8
B
O3'
C
8
1_555
B
BRU
9
B
P
BRU
9
1_555
covale
1.591
both
A
B
C
8
B
O3'
C
8
1_555
B
BRU
9
B
P
BRU
9
1_555
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
8
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
8
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
8
B
N4
C
8
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
B
G
7
B
N1
G
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
B
G
7
B
O6
G
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
B
G
7
B
N2
G
7
1_555
hydrog
TYPE_28_PAIR
A
U
3
A
N3
U
3
1_555
B
G
6
B
O6
G
6
1_555
hydrog
TYPE_28_PAIR
A
U
3
A
O2
U
3
1_555
B
G
6
B
N1
G
6
1_555
hydrog
U-C MISPAIR
A
U
4
A
O4
U
4
1_555
B
C
5
B
N4
C
5
1_555
hydrog
C-U MISPAIR
A
C
5
A
N4
C
5
1_555
B
U
4
B
O4
U
4
1_555
hydrog
TYPE_28_PAIR
A
G
6
A
N1
G
6
1_555
B
U
3
B
O2
U
3
1_555
hydrog
TYPE_28_PAIR
A
G
6
A
O6
G
6
1_555
B
U
3
B
N3
U
3
1_555
hydrog
WATSON-CRICK
A
G
7
A
N1
G
7
1_555
B
C
2
B
N3
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
N2
G
7
1_555
B
C
2
B
O2
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
O6
G
7
1_555
B
C
2
B
N4
C
2
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
B
G
1
B
N1
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
B
G
1
B
O6
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
B
G
1
B
N2
G
1
1_555
DNA/RNA
RNA/DNA HYBRID, BROMO URACIL, RHODIUM(III) HEXAMMINE, C-U G-U MISMATCH, DNA-RNA COMPLEX
1IHA
PDB
1
1IHA
1
9
1IHA
1
9
1IHA
A
1
1
9
1
9
1IHA
1
9
1IHA
B
1
1
9
BINDING SITE FOR RESIDUE RHD A 11
A
RHD
11
Software
4
BINDING SITE FOR RESIDUE RHD A 12
A
RHD
12
Software
4
BINDING SITE FOR RESIDUE CL B 31
B
CL
31
Software
2
A
C
5
A
C
5
4
1_555
A
G
6
A
G
6
4
1_555
A
G
7
A
G
7
4
1_555
A
HOH
104
G
HOH
4
1_555
A
C
5
A
C
5
4
1_555
A
G
7
A
G
7
4
4_546
A
C
8
A
C
8
4
4_546
B
C
5
B
C
5
4
1_555
A
HOH
103
G
HOH
2
1_555
B
HOH
154
H
HOH
2
1_555
5
C 1 2 1