0.017209
0.000000
0.000000
0.000000
0.011582
0.000000
0.000000
0.000000
0.021687
0.00000
0.00000
0.00000
Dohnalek, J.
Hasek, J.
Duskova, J.
Petrokova, H.
Hradilek, M.
Soucek, M.
Konvalinka, J.
Brynda, J.
Sedlacek, J.
Fabry, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.110
86.340
46.110
C38 H50 N6 O7
702.840
N-{(2R,3S)-3-[(tert-butoxycarbonyl)amino]-2-hydroxy-4-phenylbutyl}-L-phenylalanyl-L-glutaminyl-L-phenylalaninamide
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
N
N
9
S
C
N
10
S
C
N
11
N
O
N
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
N
19
N
C
N
20
N
N
N
21
S
C
N
22
N
C
N
23
N
O
N
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
Y
29
N
C
Y
30
N
C
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
C
N
38
N
O
N
39
N
N
N
40
N
N
N
41
S
C
N
42
N
C
N
43
N
O
N
44
N
C
Y
45
N
C
Y
46
N
C
Y
47
N
C
Y
48
N
C
Y
49
N
C
Y
50
N
C
N
51
N
N
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
N
N
123
N
C
N
124
N
N
N
125
N
N
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
N
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
R
C
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
S
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
N
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
O
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
Y
257
N
C
Y
258
N
N
Y
259
N
C
Y
260
N
C
Y
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
S
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
N
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
S
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
N
410
N
O
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
R
C
N
424
N
O
N
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
N
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
N
474
N
O
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
N
N
488
S
C
N
489
N
C
N
490
N
O
N
491
N
C
N
492
N
C
N
493
N
C
N
494
N
O
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
Y
28
N
doub
Y
29
N
sing
Y
30
N
sing
N
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
doub
N
35
N
sing
Y
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
Y
50
N
doub
Y
51
N
sing
Y
52
N
sing
N
53
N
sing
Y
54
N
doub
N
55
N
sing
Y
56
N
doub
N
57
N
sing
Y
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
Y
86
N
doub
Y
87
N
sing
Y
88
N
sing
N
89
N
sing
Y
90
N
doub
N
91
N
sing
Y
92
N
doub
N
93
N
sing
Y
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
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N
sing
N
215
N
sing
N
216
N
sing
N
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N
sing
N
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N
sing
N
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N
doub
N
220
N
sing
N
221
N
sing
N
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N
sing
N
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N
sing
N
224
N
sing
N
225
N
sing
N
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N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
Y
256
N
sing
Y
257
N
doub
Y
258
N
doub
N
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
Y
433
N
doub
Y
434
N
sing
Y
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
doub
N
445
N
sing
Y
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
Y
461
N
doub
Y
462
N
sing
Y
463
N
sing
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
doub
N
468
N
sing
Y
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
doub
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
45
1432
1438
10.1021/jm010979e
11906284
Hydroxyethylamine isostere of an HIV-1 protease inhibitor prefers its amine to the hydroxy group in binding to catalytic aspartates. A synchrotron study of HIV-1 protease in complex with a peptidomimetic inhibitor.
2002
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
472
476
10.1107/S0907444900018928
A distinct binding mode of a hydroxyethylamine isostere inhibitor of HIV-1 protease
2001
10.2210/pdb1iiq/pdb
pdb_00001iiq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-04-10
MARRESEARCH
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
5.2R
ELETTRA
1.00
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
10803.756
PROTEASE RETROPEPSIN
3.4.23.16
HIV-1 PROTEASE
2
man
polymer
peptidomimetic inhibitor
702.840
N-{(2R,3S)-3-[(tert-butoxycarbonyl)amino]-2-hydroxy-4-phenylbutyl}-L-phenylalanyl-L-glutaminyl-L-phenylalaninamide
1
syn
non-polymer
92.094
GLYCEROL
5
syn
non-polymer
18.015
water
301
nat
water
HIV-1 PROTEASE
E.C.3.4.23.16
no
no
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
11676
Human immunodeficiency virus 1
562
Escherichia coli
2
2.59
52.56
VAPOR DIFFUSION, HANGING DROP
4.5
ammonium phosphate, sodium citrate, pH 4.5,
VAPOR DIFFUSION, HANGING DROP at 280K
280
pdbx_unobs_or_zero_occ_atoms
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_site
entity
pdbx_entity_src_syn
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Other
Advisory
Refinement description
Advisory
Data collection
Database references
Derived calculations
Refinement description
Source and taxonomy
Structure summary
1
0
2002-04-12
1
1
2007-10-16
1
2
2011-07-13
1
3
2012-12-12
1
4
2017-10-04
1
5
2023-08-16
1
6
2024-03-13
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
HIV-1 protease complexed with another peptidomimetic inhibitor
RCSB
Y
RCSB
2001-04-24
REL
REL
0ZR
N-{(2R,3S)-3-[(tert-butoxycarbonyl)amino]-2-hydroxy-4-phenylbutyl}-L-phenylalanyl-L-glutaminyl-L-phenylalaninamide
GOL
GLYCEROL
HOH
water
1HSG
PDB ENTRY 1HSG
PDB
experimental model
Inhibitor
BOC-PS0-PHE-GLN-PHE-NH2
Peptide-like
BOC
201
2
0ZR
0ZR
201
A
GOL
701
3
GOL
GOL
701
A
GOL
702
3
GOL
GOL
702
A
GOL
704
3
GOL
GOL
704
A
GOL
703
3
GOL
GOL
703
B
GOL
705
3
GOL
GOL
705
B
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
376
4
HOH
HOH
376
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
402
4
HOH
HOH
402
A
HOH
439
4
HOH
HOH
439
A
HOH
507
4
HOH
HOH
507
A
HOH
511
4
HOH
HOH
511
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
533
4
HOH
HOH
533
A
HOH
534
4
HOH
HOH
534
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
547
4
HOH
HOH
547
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
584
4
HOH
HOH
584
A
HOH
592
4
HOH
HOH
592
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
386
4
HOH
HOH
386
B
HOH
400
4
HOH
HOH
400
B
HOH
401
4
HOH
HOH
401
B
HOH
403
4
HOH
HOH
403
B
HOH
404
4
HOH
HOH
404
B
HOH
405
4
HOH
HOH
405
B
HOH
406
4
HOH
HOH
406
B
HOH
407
4
HOH
HOH
407
B
HOH
408
4
HOH
HOH
408
B
HOH
409
4
HOH
HOH
409
B
HOH
410
4
HOH
HOH
410
B
HOH
411
4
HOH
HOH
411
B
HOH
412
4
HOH
HOH
412
B
HOH
413
4
HOH
HOH
413
B
HOH
414
4
HOH
HOH
414
B
HOH
415
4
HOH
HOH
415
B
HOH
416
4
HOH
HOH
416
B
HOH
417
4
HOH
HOH
417
B
HOH
418
4
HOH
HOH
418
B
HOH
419
4
HOH
HOH
419
B
HOH
420
4
HOH
HOH
420
B
HOH
421
4
HOH
HOH
421
B
HOH
422
4
HOH
HOH
422
B
HOH
423
4
HOH
HOH
423
B
HOH
424
4
HOH
HOH
424
B
HOH
425
4
HOH
HOH
425
B
HOH
426
4
HOH
HOH
426
B
HOH
427
4
HOH
HOH
427
B
HOH
428
4
HOH
HOH
428
B
HOH
429
4
HOH
HOH
429
B
HOH
430
4
HOH
HOH
430
B
HOH
431
4
HOH
HOH
431
B
HOH
432
4
HOH
HOH
432
B
HOH
433
4
HOH
HOH
433
B
HOH
434
4
HOH
HOH
434
B
HOH
435
4
HOH
HOH
435
B
HOH
436
4
HOH
HOH
436
B
HOH
437
4
HOH
HOH
437
B
HOH
438
4
HOH
HOH
438
B
HOH
440
4
HOH
HOH
440
B
HOH
441
4
HOH
HOH
441
B
HOH
442
4
HOH
HOH
442
B
HOH
443
4
HOH
HOH
443
B
HOH
444
4
HOH
HOH
444
B
HOH
445
4
HOH
HOH
445
B
HOH
446
4
HOH
HOH
446
B
HOH
447
4
HOH
HOH
447
B
HOH
448
4
HOH
HOH
448
B
HOH
449
4
HOH
HOH
449
B
HOH
450
4
HOH
HOH
450
B
HOH
451
4
HOH
HOH
451
B
HOH
452
4
HOH
HOH
452
B
HOH
453
4
HOH
HOH
453
B
HOH
454
4
HOH
HOH
454
B
HOH
455
4
HOH
HOH
455
B
HOH
456
4
HOH
HOH
456
B
HOH
457
4
HOH
HOH
457
B
HOH
458
4
HOH
HOH
458
B
HOH
459
4
HOH
HOH
459
B
HOH
460
4
HOH
HOH
460
B
HOH
461
4
HOH
HOH
461
B
HOH
462
4
HOH
HOH
462
B
HOH
463
4
HOH
HOH
463
B
HOH
464
4
HOH
HOH
464
B
HOH
465
4
HOH
HOH
465
B
HOH
466
4
HOH
HOH
466
B
HOH
467
4
HOH
HOH
467
B
HOH
468
4
HOH
HOH
468
B
HOH
469
4
HOH
HOH
469
B
HOH
470
4
HOH
HOH
470
B
HOH
471
4
HOH
HOH
471
B
HOH
472
4
HOH
HOH
472
B
HOH
473
4
HOH
HOH
473
B
HOH
474
4
HOH
HOH
474
B
HOH
475
4
HOH
HOH
475
B
HOH
476
4
HOH
HOH
476
B
HOH
477
4
HOH
HOH
477
B
HOH
478
4
HOH
HOH
478
B
HOH
479
4
HOH
HOH
479
B
HOH
480
4
HOH
HOH
480
B
HOH
481
4
HOH
HOH
481
B
HOH
482
4
HOH
HOH
482
B
HOH
483
4
HOH
HOH
483
B
HOH
484
4
HOH
HOH
484
B
HOH
485
4
HOH
HOH
485
B
HOH
486
4
HOH
HOH
486
B
HOH
487
4
HOH
HOH
487
B
HOH
488
4
HOH
HOH
488
B
HOH
489
4
HOH
HOH
489
B
HOH
490
4
HOH
HOH
490
B
HOH
491
4
HOH
HOH
491
B
HOH
492
4
HOH
HOH
492
B
HOH
493
4
HOH
HOH
493
B
HOH
494
4
HOH
HOH
494
B
HOH
495
4
HOH
HOH
495
B
HOH
496
4
HOH
HOH
496
B
HOH
497
4
HOH
HOH
497
B
HOH
498
4
HOH
HOH
498
B
HOH
499
4
HOH
HOH
499
B
HOH
500
4
HOH
HOH
500
B
HOH
501
4
HOH
HOH
501
B
HOH
502
4
HOH
HOH
502
B
HOH
503
4
HOH
HOH
503
B
HOH
504
4
HOH
HOH
504
B
HOH
505
4
HOH
HOH
505
B
HOH
506
4
HOH
HOH
506
B
HOH
508
4
HOH
HOH
508
B
HOH
509
4
HOH
HOH
509
B
HOH
510
4
HOH
HOH
510
B
HOH
512
4
HOH
HOH
512
B
HOH
513
4
HOH
HOH
513
B
HOH
514
4
HOH
HOH
514
B
HOH
515
4
HOH
HOH
515
B
HOH
516
4
HOH
HOH
516
B
HOH
517
4
HOH
HOH
517
B
HOH
518
4
HOH
HOH
518
B
HOH
519
4
HOH
HOH
519
B
HOH
520
4
HOH
HOH
520
B
HOH
521
4
HOH
HOH
521
B
HOH
522
4
HOH
HOH
522
B
HOH
523
4
HOH
HOH
523
B
HOH
524
4
HOH
HOH
524
B
HOH
525
4
HOH
HOH
525
B
HOH
526
4
HOH
HOH
526
B
HOH
546
4
HOH
HOH
546
B
HOH
548
4
HOH
HOH
548
B
HOH
552
4
HOH
HOH
552
B
HOH
553
4
HOH
HOH
553
B
HOH
554
4
HOH
HOH
554
B
HOH
555
4
HOH
HOH
555
B
HOH
556
4
HOH
HOH
556
B
HOH
557
4
HOH
HOH
557
B
HOH
558
4
HOH
HOH
558
B
HOH
559
4
HOH
HOH
559
B
HOH
560
4
HOH
HOH
560
B
HOH
561
4
HOH
HOH
561
B
HOH
562
4
HOH
HOH
562
B
HOH
563
4
HOH
HOH
563
B
HOH
564
4
HOH
HOH
564
B
HOH
565
4
HOH
HOH
565
B
HOH
566
4
HOH
HOH
566
B
HOH
567
4
HOH
HOH
567
B
HOH
568
4
HOH
HOH
568
B
HOH
569
4
HOH
HOH
569
B
HOH
570
4
HOH
HOH
570
B
HOH
571
4
HOH
HOH
571
B
HOH
572
4
HOH
HOH
572
B
HOH
573
4
HOH
HOH
573
B
HOH
574
4
HOH
HOH
574
B
HOH
575
4
HOH
HOH
575
B
HOH
576
4
HOH
HOH
576
B
HOH
577
4
HOH
HOH
577
B
HOH
578
4
HOH
HOH
578
B
HOH
579
4
HOH
HOH
579
B
HOH
580
4
HOH
HOH
580
B
HOH
581
4
HOH
HOH
581
B
HOH
582
4
HOH
HOH
582
B
HOH
583
4
HOH
HOH
583
B
HOH
585
4
HOH
HOH
585
B
HOH
586
4
HOH
HOH
586
B
HOH
587
4
HOH
HOH
587
B
HOH
588
4
HOH
HOH
588
B
HOH
589
4
HOH
HOH
589
B
HOH
590
4
HOH
HOH
590
B
HOH
591
4
HOH
HOH
591
B
HOH
593
4
HOH
HOH
593
B
HOH
594
4
HOH
HOH
594
B
HOH
595
4
HOH
HOH
595
B
HOH
596
4
HOH
HOH
596
B
HOH
597
4
HOH
HOH
597
B
HOH
598
4
HOH
HOH
598
B
HOH
599
4
HOH
HOH
599
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
LEU
33
n
33
LEU
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
LEU
63
n
63
LEU
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
GLN
7
n
7
GLN
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
LEU
33
n
33
LEU
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
LEU
63
n
63
LEU
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
CYS
95
n
95
CYS
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
N
ASN
98
B
N
ASN
98
A
O
THR
96
A
O
THR
96
A
O
LEU
97
A
O
LEU
97
B
N
ILE
3
B
N
ILE
3
A
O
VAL
11
A
O
VAL
11
A
N
ALA
22
A
N
ALA
22
A
O
LEU
23
A
O
LEU
23
A
N
ILE
85
A
N
ILE
85
A
N
THR
31
A
N
THR
31
A
O
THR
74
A
O
THR
74
A
O
VAL
77
A
O
VAL
77
A
N
ARG
57
A
N
ARG
57
A
O
GLU
65
A
O
GLU
65
A
N
LYS
14
A
N
LYS
14
A
N
ILE
15
A
N
ILE
15
A
O
GLN
18
A
O
GLN
18
A
N
THR
31
A
N
THR
31
A
O
THR
74
A
O
THR
74
A
O
VAL
77
A
O
VAL
77
A
N
ARG
57
A
N
ARG
57
A
N
GLN
58
A
N
GLN
58
A
O
LYS
43
A
O
LYS
43
B
O
VAL
11
B
O
VAL
11
B
N
ALA
22
B
N
ALA
22
B
O
LEU
23
B
O
LEU
23
B
N
ILE
85
B
N
ILE
85
B
N
THR
31
B
N
THR
31
B
O
THR
74
B
O
THR
74
B
O
VAL
77
B
O
VAL
77
B
N
ARG
57
B
N
ARG
57
B
O
GLU
65
B
O
GLU
65
B
N
LYS
14
B
N
LYS
14
B
N
ILE
15
B
N
ILE
15
B
O
GLN
18
B
O
GLN
18
B
N
THR
31
B
N
THR
31
B
O
THR
74
B
O
THR
74
B
O
VAL
77
B
O
VAL
77
B
N
ARG
57
B
N
ARG
57
B
N
GLN
58
B
N
GLN
58
B
O
LYS
43
B
O
LYS
43
1
B
HOH
523
J
HOH
1
A
CG
ARG
41
A
CG
ARG
41
0
Y
1
A
CD
ARG
41
A
CD
ARG
41
0
Y
1
A
NE
ARG
41
A
NE
ARG
41
0
Y
1
A
CZ
ARG
41
A
CZ
ARG
41
0
Y
1
A
NH1
ARG
41
A
NH1
ARG
41
0
Y
1
A
NH2
ARG
41
A
NH2
ARG
41
0
Y
1
A
GLY
51
19.26
B
1
A
A
GLY
GLY
51
52
B
-143.03
PROTEIN_REP.PA
PROTEIN.TOP
WATER_REP.PARA
WATER.TOP
INH_ALL.PAR
INH_ALL_FREEBOC.TOP
14.8
Used maximum likelihood and conjugated gradient least squares refinement.
0.2040000
0.006
0.1640000
0.1640000
1.83
10.91
1002
21035
20446
4.9
97.2
RANDOM
1339622.94
0.00
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1HSG
Engh & Huber, ligand parametrisation: CSD structural database
FLAT MODEL
87.55
0.471
0.20
0.16
5.00
0.12
0.09
1.83
10.91
301
1898
81
0
1516
0.008
1.5
25.6
0.95
2.05
3.00
2.86
3.00
3.01
4.00
4.40
4.00
0.2260000
0.018
0.1770000
1.94
165
3157
3322
6
5.0
96.6
5.8
1.83
11.0
1IIQ
20474
20474
0
0
0.1100000
1
15.8
9.2
97.4
0.2200000
1.83
1.88
4.9
1382
1
93.7
phasing
AMoRE
refinement
CNS
1.0
data reduction
XDS
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF HIV-1 PROTEASE COMPLEXED WITH A HYDROXYETHYLAMINE PEPTIDOMIMETIC INHIBITOR
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
1
6
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
2
6
HYDROLASE/HYDROLASE INHIBITOR
HIV protease, peptidomimetics, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
POL_HV1BR
UNP
1
69
P03367
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
69
167
1IIQ
1
99
P03367
A
1
1
99
69
167
1IIQ
1
99
P03367
B
1
1
99
4
3
5
4
3
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
LEU
10
A
LEU
10
A
VAL
11
A
VAL
11
A
ALA
22
A
ALA
22
A
LEU
24
A
LEU
24
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
THR
31
A
THR
31
A
LEU
33
A
LEU
33
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
ILE
13
A
ILE
13
A
ILE
15
A
ILE
15
A
GLN
18
A
GLN
18
A
LEU
19
A
LEU
19
A
THR
31
A
THR
31
A
LEU
33
A
LEU
33
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
B
LEU
10
B
LEU
10
B
VAL
11
B
VAL
11
B
ALA
22
B
ALA
22
B
LEU
24
B
LEU
24
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
THR
31
B
THR
31
B
LEU
33
B
LEU
33
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
ILE
13
B
ILE
13
B
ILE
15
B
ILE
15
B
GLN
18
B
GLN
18
B
LEU
19
B
LEU
19
B
THR
31
B
THR
31
B
LEU
33
B
LEU
33
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
BINDING SITE FOR RESIDUE 0ZR A 201
A
0ZR
201
Software
22
BINDING SITE FOR RESIDUE GOL A 701
A
GOL
701
Software
7
BINDING SITE FOR RESIDUE GOL A 702
A
GOL
702
Software
4
BINDING SITE FOR RESIDUE GOL B 703
B
GOL
703
Software
8
BINDING SITE FOR RESIDUE GOL A 704
A
GOL
704
Software
9
BINDING SITE FOR RESIDUE GOL B 705
B
GOL
705
Software
7
A
ASP
25
A
ASP
25
22
1_555
A
GLY
27
A
GLY
27
22
1_555
A
ALA
28
A
ALA
28
22
1_555
A
ASP
29
A
ASP
29
22
1_555
A
ASP
30
A
ASP
30
22
1_555
A
ILE
47
A
ILE
47
22
1_555
A
GLY
48
A
GLY
48
22
1_555
A
PRO
81
A
PRO
81
22
1_555
A
VAL
82
A
VAL
82
22
1_555
A
HOH
301
I
HOH
22
1_555
A
GOL
702
E
GOL
22
1_555
B
LEU
23
B
LEU
23
22
1_555
B
ASP
25
B
ASP
25
22
1_555
B
GLY
27
B
GLY
27
22
1_555
B
ALA
28
B
ALA
28
22
1_555
B
GLY
48
B
GLY
48
22
1_555
B
GLY
49
B
GLY
49
22
1_555
B
PRO
81
B
PRO
81
22
1_555
B
VAL
82
B
VAL
82
22
1_555
B
ILE
84
B
ILE
84
22
1_555
B
HOH
526
J
HOH
22
1_555
B
GOL
705
H
GOL
22
1_555
A
GLN
18
A
GLN
18
7
1_555
A
MET
36
A
MET
36
7
1_555
A
SER
37
A
SER
37
7
1_555
B
THR
12
B
THR
12
7
1_556
B
GLU
65
B
GLU
65
7
1_556
B
CYS
67
B
CYS
67
7
1_556
B
GLY
68
B
GLY
68
7
1_556
A
ASP
29
A
ASP
29
4
1_555
A
ASP
30
A
ASP
30
4
1_555
A
LYS
45
A
LYS
45
4
1_555
A
0ZR
201
C
0ZR
4
1_555
B
GLU
35
B
GLU
35
8
1_555
B
LYS
55
B
LYS
55
8
1_555
B
ARG
57
B
ARG
57
8
1_555
B
HOH
480
J
HOH
8
1_555
B
HOH
481
J
HOH
8
1_555
B
HOH
524
J
HOH
8
1_555
B
HOH
525
J
HOH
8
1_555
B
HOH
565
J
HOH
8
1_555
A
TRP
6
A
TRP
6
9
1_555
A
PHE
53
A
PHE
53
9
4_555
A
HOH
439
I
HOH
9
1_555
A
HOH
511
I
HOH
9
1_555
A
HOH
601
I
HOH
9
1_555
B
ARG
87
B
ARG
87
9
1_555
B
ASN
88
B
ASN
88
9
1_555
B
THR
91
B
THR
91
9
1_555
B
HOH
509
J
HOH
9
4_555
A
0ZR
201
C
0ZR
7
1_555
B
ASP
29
B
ASP
29
7
1_555
B
ILE
47
B
ILE
47
7
1_555
B
GLY
48
B
GLY
48
7
1_555
B
HOH
526
J
HOH
7
1_555
B
HOH
562
J
HOH
7
1_555
B
HOH
596
J
HOH
7
1_555
18
orthorhombic
P 21 21 2