0.028196 0.000000 0.010039 0.000000 0.034945 0.000000 0.000000 0.000000 0.023856 0.00000 0.00000 0.00000 Akey, D.L. Malashkevich, V.N. Kim, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 109.60 90.00 35.466 28.616 44.496 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 40 6352 6360 10.1021/bi002829w 11371197 Buried polar residues in coiled-coil interfaces. 2001 10.2210/pdb1ij0/pdb pdb_00001ij0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE RIGAKU RAXIS IV++ SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 3990.650 GENERAL CONTROL PROTEIN GCN4 Coiled coil region L12S, N16V 3 syn polymer 65.409 ZINC ION 3 syn non-polymer 18.015 water 130 nat water GCN4-pVLS no yes (ACE)RMKQLEDKVEESLSKVYHLENEVARLKKLVGER XRMKQLEDKVEESLSKVYHLENEVARLKKLVGER A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.78 30.77 VAPOR DIFFUSION, HANGING DROP 7.0 0.1 M Na Cacodylate, 16% PEG 8000, 0.1 M Zn Acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K 297 software database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Refinement description Database references Derived calculations 1 0 2001-08-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-04-24 REL REL ZN ZINC ION HOH water THIS PROTEIN WAS CHEMICALLY SYNTHESIZED USING Solid phase FMOC peptide synthesis. It is naturally found in Saccharomyces cerevisiae (yeast). sample ZN 1 2 ZN ZN 201 A ZN 2 2 ZN ZN 202 B ZN 3 2 ZN ZN 203 C TIP 15 3 HOH HOH 202 A TIP 17 3 HOH HOH 203 A TIP 20 3 HOH HOH 204 A TIP 23 3 HOH HOH 205 A TIP 26 3 HOH HOH 206 A TIP 34 3 HOH HOH 207 A TIP 39 3 HOH HOH 208 A TIP 43 3 HOH HOH 209 A TIP 48 3 HOH HOH 210 A TIP 53 3 HOH HOH 211 A TIP 59 3 HOH HOH 212 A TIP 60 3 HOH HOH 213 A TIP 64 3 HOH HOH 214 A TIP 65 3 HOH HOH 215 A TIP 67 3 HOH HOH 216 A TIP 68 3 HOH HOH 217 A TIP 69 3 HOH HOH 218 A TIP 71 3 HOH HOH 219 A TIP 73 3 HOH HOH 220 A TIP 74 3 HOH HOH 221 A TIP 75 3 HOH HOH 222 A TIP 96 3 HOH HOH 223 A TIP 101 3 HOH HOH 224 A TIP 102 3 HOH HOH 225 A TIP 103 3 HOH HOH 226 A TIP 116 3 HOH HOH 227 A TIP 117 3 HOH HOH 228 A TIP 118 3 HOH HOH 229 A TIP 119 3 HOH HOH 230 A TIP 121 3 HOH HOH 231 A TIP 122 3 HOH HOH 232 A TIP 123 3 HOH HOH 233 A TIP 124 3 HOH HOH 234 A TIP 126 3 HOH HOH 235 A TIP 1 3 HOH HOH 203 B TIP 2 3 HOH HOH 204 B TIP 4 3 HOH HOH 205 B TIP 5 3 HOH HOH 206 B TIP 9 3 HOH HOH 207 B TIP 11 3 HOH HOH 208 B TIP 12 3 HOH HOH 209 B TIP 13 3 HOH HOH 210 B TIP 22 3 HOH HOH 211 B TIP 25 3 HOH HOH 212 B TIP 30 3 HOH HOH 213 B TIP 32 3 HOH HOH 214 B TIP 35 3 HOH HOH 215 B TIP 38 3 HOH HOH 216 B TIP 41 3 HOH HOH 217 B TIP 42 3 HOH HOH 218 B TIP 45 3 HOH HOH 219 B TIP 46 3 HOH HOH 220 B TIP 50 3 HOH HOH 221 B TIP 51 3 HOH HOH 222 B TIP 52 3 HOH HOH 223 B TIP 55 3 HOH HOH 224 B TIP 56 3 HOH HOH 225 B TIP 57 3 HOH HOH 226 B TIP 58 3 HOH HOH 227 B TIP 61 3 HOH HOH 228 B TIP 66 3 HOH HOH 229 B TIP 70 3 HOH HOH 230 B TIP 76 3 HOH HOH 231 B TIP 77 3 HOH HOH 232 B TIP 79 3 HOH HOH 233 B TIP 80 3 HOH HOH 234 B TIP 81 3 HOH HOH 235 B TIP 82 3 HOH HOH 236 B TIP 83 3 HOH HOH 237 B TIP 84 3 HOH HOH 238 B TIP 85 3 HOH HOH 239 B TIP 86 3 HOH HOH 240 B TIP 87 3 HOH HOH 241 B TIP 100 3 HOH HOH 242 B TIP 104 3 HOH HOH 243 B TIP 105 3 HOH HOH 244 B TIP 106 3 HOH HOH 245 B TIP 107 3 HOH HOH 246 B TIP 108 3 HOH HOH 247 B TIP 109 3 HOH HOH 248 B TIP 110 3 HOH HOH 249 B TIP 111 3 HOH HOH 250 B TIP 115 3 HOH HOH 251 B TIP 128 3 HOH HOH 252 B TIP 129 3 HOH HOH 253 B TIP 130 3 HOH HOH 254 B TIP 131 3 HOH HOH 255 B TIP 132 3 HOH HOH 256 B TIP 133 3 HOH HOH 257 B TIP 134 3 HOH HOH 258 B TIP 135 3 HOH HOH 259 B TIP 3 3 HOH HOH 204 C TIP 6 3 HOH HOH 205 C TIP 7 3 HOH HOH 206 C TIP 8 3 HOH HOH 207 C TIP 10 3 HOH HOH 208 C TIP 14 3 HOH HOH 209 C TIP 16 3 HOH HOH 210 C TIP 18 3 HOH HOH 211 C TIP 19 3 HOH HOH 212 C TIP 21 3 HOH HOH 213 C TIP 24 3 HOH HOH 214 C TIP 27 3 HOH HOH 215 C TIP 28 3 HOH HOH 216 C TIP 29 3 HOH HOH 217 C TIP 31 3 HOH HOH 218 C TIP 33 3 HOH HOH 219 C TIP 36 3 HOH HOH 220 C TIP 40 3 HOH HOH 221 C TIP 44 3 HOH HOH 222 C TIP 47 3 HOH HOH 223 C TIP 49 3 HOH HOH 224 C TIP 54 3 HOH HOH 225 C TIP 72 3 HOH HOH 226 C TIP 88 3 HOH HOH 227 C TIP 89 3 HOH HOH 228 C TIP 90 3 HOH HOH 229 C TIP 91 3 HOH HOH 230 C TIP 92 3 HOH HOH 231 C TIP 93 3 HOH HOH 232 C TIP 94 3 HOH HOH 233 C TIP 95 3 HOH HOH 234 C TIP 97 3 HOH HOH 235 C TIP 98 3 HOH HOH 236 C TIP 112 3 HOH HOH 237 C TIP 113 3 HOH HOH 238 C TIP 114 3 HOH HOH 239 C TIP 120 3 HOH HOH 240 C TIP 127 3 HOH HOH 241 C TIP 136 3 HOH HOH 242 C ACE 0 n 1 ACE 0 A ARG 1 n 2 ARG 1 A MET 2 n 3 MET 2 A LYS 3 n 4 LYS 3 A GLN 4 n 5 GLN 4 A LEU 5 n 6 LEU 5 A GLU 6 n 7 GLU 6 A ASP 7 n 8 ASP 7 A LYS 8 n 9 LYS 8 A VAL 9 n 10 VAL 9 A GLU 10 n 11 GLU 10 A GLU 11 n 12 GLU 11 A SER 12 n 13 SER 12 A LEU 13 n 14 LEU 13 A SER 14 n 15 SER 14 A LYS 15 n 16 LYS 15 A VAL 16 n 17 VAL 16 A TYR 17 n 18 TYR 17 A HIS 18 n 19 HIS 18 A LEU 19 n 20 LEU 19 A GLU 20 n 21 GLU 20 A ASN 21 n 22 ASN 21 A GLU 22 n 23 GLU 22 A VAL 23 n 24 VAL 23 A ALA 24 n 25 ALA 24 A ARG 25 n 26 ARG 25 A LEU 26 n 27 LEU 26 A LYS 27 n 28 LYS 27 A LYS 28 n 29 LYS 28 A LEU 29 n 30 LEU 29 A VAL 30 n 31 VAL 30 A GLY 31 n 32 GLY 31 A n 33 32 A n 34 33 A ACE 0 n 1 ACE 0 B ARG 1 n 2 ARG 1 B MET 2 n 3 MET 2 B LYS 3 n 4 LYS 3 B GLN 4 n 5 GLN 4 B LEU 5 n 6 LEU 5 B GLU 6 n 7 GLU 6 B ASP 7 n 8 ASP 7 B LYS 8 n 9 LYS 8 B VAL 9 n 10 VAL 9 B GLU 10 n 11 GLU 10 B GLU 11 n 12 GLU 11 B SER 12 n 13 SER 12 B LEU 13 n 14 LEU 13 B SER 14 n 15 SER 14 B LYS 15 n 16 LYS 15 B VAL 16 n 17 VAL 16 B TYR 17 n 18 TYR 17 B HIS 18 n 19 HIS 18 B LEU 19 n 20 LEU 19 B GLU 20 n 21 GLU 20 B ASN 21 n 22 ASN 21 B GLU 22 n 23 GLU 22 B VAL 23 n 24 VAL 23 B ALA 24 n 25 ALA 24 B ARG 25 n 26 ARG 25 B LEU 26 n 27 LEU 26 B LYS 27 n 28 LYS 27 B LYS 28 n 29 LYS 28 B LEU 29 n 30 LEU 29 B VAL 30 n 31 VAL 30 B GLY 31 n 32 GLY 31 B n 33 32 B n 34 33 B ACE 0 n 1 ACE 0 C ARG 1 n 2 ARG 1 C MET 2 n 3 MET 2 C LYS 3 n 4 LYS 3 C GLN 4 n 5 GLN 4 C LEU 5 n 6 LEU 5 C GLU 6 n 7 GLU 6 C ASP 7 n 8 ASP 7 C LYS 8 n 9 LYS 8 C VAL 9 n 10 VAL 9 C GLU 10 n 11 GLU 10 C GLU 11 n 12 GLU 11 C SER 12 n 13 SER 12 C LEU 13 n 14 LEU 13 C SER 14 n 15 SER 14 C LYS 15 n 16 LYS 15 C VAL 16 n 17 VAL 16 C TYR 17 n 18 TYR 17 C HIS 18 n 19 HIS 18 C LEU 19 n 20 LEU 19 C GLU 20 n 21 GLU 20 C ASN 21 n 22 ASN 21 C GLU 22 n 23 GLU 22 C VAL 23 n 24 VAL 23 C ALA 24 n 25 ALA 24 C ARG 25 n 26 ARG 25 C LEU 26 n 27 LEU 26 C LYS 27 n 28 LYS 27 C LYS 28 n 29 LYS 28 C LEU 29 n 30 LEU 29 C VAL 30 n 31 VAL 30 C GLY 31 n 32 GLY 31 C n 33 32 C n 34 33 C author_and_software_defined_assembly PISA 3 trimeric 4570 -120 6230 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 A GLU 22 A OE1 GLU 23 1_555 104.9 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 B HOH 230 H O HOH 1_555 144.3 A GLU 22 A OE1 GLU 23 1_555 A ZN 201 D ZN ZN 1_555 B HOH 230 H O HOH 1_555 95.6 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 C GLU 10 C OE1 GLU 11 1_545 103.7 A GLU 22 A OE1 GLU 23 1_555 A ZN 201 D ZN ZN 1_555 C GLU 10 C OE1 GLU 11 1_545 98.0 B HOH 230 H O HOH 1_555 A ZN 201 D ZN ZN 1_555 C GLU 10 C OE1 GLU 11 1_545 102.0 B HIS 18 B NE2 HIS 19 1_555 B ZN 202 E ZN ZN 1_555 B GLU 22 B OE1 GLU 23 1_555 112.7 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 C GLU 22 C OE2 GLU 23 1_555 117.6 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 C HOH 221 I O HOH 1_555 103.2 C GLU 22 C OE2 GLU 23 1_555 C ZN 203 F ZN ZN 1_555 C HOH 221 I O HOH 1_555 69.6 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 C HOH 225 I O HOH 1_555 112.8 C GLU 22 C OE2 GLU 23 1_555 C ZN 203 F ZN ZN 1_555 C HOH 225 I O HOH 1_555 119.8 C HOH 221 I O HOH 1_555 C ZN 203 F ZN ZN 1_555 C HOH 225 I O HOH 1_555 68.7 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 C HOH 226 I O HOH 1_555 110.3 C GLU 22 C OE2 GLU 23 1_555 C ZN 203 F ZN ZN 1_555 C HOH 226 I O HOH 1_555 109.2 C HOH 221 I O HOH 1_555 C ZN 203 F ZN ZN 1_555 C HOH 226 I O HOH 1_555 141.2 C HOH 225 I O HOH 1_555 C ZN 203 F ZN ZN 1_555 C HOH 226 I O HOH 1_555 80.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLU 32 A GLU 33 1 Y 1 A ARG 33 A ARG 34 1 Y 1 B GLU 32 B GLU 33 1 Y 1 B ARG 33 B ARG 34 1 Y 1 C GLU 32 C GLU 33 1 Y 1 C ARG 33 C ARG 34 1 Y 1 9.62 1.60 100.20 109.82 C C C CG SD CE MET MET MET 2 2 2 N 1 A VAL 30 -82.66 -95.11 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 25.9 -1.44 0.00 1.51 -2.05 0.00 3.49 0.2580000 0.010 0.2110000 1.86 20.00 670 7255 6847 9.9 94.4 RANDOM 539511.42 0.00 1 RESTRAINED THROUGHOUT 0.0 0.0 Engh & Huber FLAT MODEL 57.42 0.364 0.28 0.23 5.00 0.32 0.33 1.86 20.00 130 910 3 0 777 0.013 1.9 16.0 1.15 0.3860000 0.047 0.4030000 1.86 67 557 10 10.7 79.0 24.5 1.86 20.00 1IJ0 6904 6740 0 0 0.0650000 1 15.4 3.2 97.6 0.0360000 1.86 1.94 2.6 93.2 phasing AMoRE refinement CNS 0.5 data scaling SCALEPACK Coiled Coil Trimer GCN4-pVLS Ser at Buried D Position 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N The biological assembly is a homotypic coiled coil trimer A ARG 1 A ARG 2 HELX_P A GLY 31 A GLY 32 1 1 31 B ARG 1 B ARG 2 HELX_P B GLY 31 B GLY 32 1 2 31 C ARG 1 C ARG 2 HELX_P C GLY 31 C GLY 32 1 3 31 covale 1.320 both A ACE 0 A C ACE 1 1_555 A ARG 1 A N ARG 2 1_555 covale 1.331 both B ACE 0 B C ACE 1 1_555 B ARG 1 B N ARG 2 1_555 covale 1.332 both C ACE 0 C C ACE 1 1_555 C ARG 1 C N ARG 2 1_555 metalc 2.237 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.410 A GLU 22 A OE1 GLU 23 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.615 A ZN 201 D ZN ZN 1_555 B HOH 230 H O HOH 1_555 metalc 2.338 A ZN 201 D ZN ZN 1_555 C GLU 10 C OE1 GLU 11 1_545 metalc 2.117 B HIS 18 B NE2 HIS 19 1_555 B ZN 202 E ZN ZN 1_555 metalc 2.202 B GLU 22 B OE1 GLU 23 1_555 B ZN 202 E ZN ZN 1_555 metalc 2.218 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 metalc 2.188 C GLU 22 C OE2 GLU 23 1_555 C ZN 203 F ZN ZN 1_555 metalc 2.730 C ZN 203 F ZN ZN 1_555 C HOH 221 I O HOH 1_555 metalc 2.621 C ZN 203 F ZN ZN 1_555 C HOH 225 I O HOH 1_555 metalc 2.684 C ZN 203 F ZN ZN 1_555 C HOH 226 I O HOH 1_555 TRANSCRIPTION COILED COIL TRIMER, TRANSCRIPTION GCN4_YEAST UNP 1 249 P03069 RMKQLEDKVEELLSKNYHLENEVARLKKLVGER 249 281 1IJ0 1 33 P03069 A 1 2 34 249 281 1IJ0 1 33 P03069 B 1 2 34 249 281 1IJ0 1 33 P03069 C 1 2 34 1 LEU engineered mutation SER 12 1IJ0 A P03069 UNP 260 13 1 ASN engineered mutation VAL 16 1IJ0 A P03069 UNP 264 17 2 LEU engineered mutation SER 12 1IJ0 B P03069 UNP 260 13 2 ASN engineered mutation VAL 16 1IJ0 B P03069 UNP 264 17 3 LEU engineered mutation SER 12 1IJ0 C P03069 UNP 260 13 3 ASN engineered mutation VAL 16 1IJ0 C P03069 UNP 264 17 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 4 BINDING SITE FOR RESIDUE ZN B 202 B ZN 202 Software 2 BINDING SITE FOR RESIDUE ZN C 203 C ZN 203 Software 6 A HIS 18 A HIS 19 4 1_555 A GLU 22 A GLU 23 4 1_555 B HOH 230 H HOH 4 1_555 C GLU 10 C GLU 11 4 1_545 B HIS 18 B HIS 19 2 1_555 B GLU 22 B GLU 23 2 1_555 A LYS 27 A LYS 28 6 1_555 C HIS 18 C HIS 19 6 1_555 C GLU 22 C GLU 23 6 1_555 C HOH 221 I HOH 6 1_555 C HOH 225 I HOH 6 1_555 C HOH 226 I HOH 6 1_555 4 P 1 21 1