0.038936 0.000000 0.006078 0.000000 0.023701 0.000000 0.000000 0.000000 0.023713 0.00000 0.00000 0.00000 Akey, D.L. Malashkevich, V.N. Kim, P.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 98.87 90.00 25.683 42.192 42.682 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 40 6352 6360 10.1021/bi002829w 11371197 Buried polar residues in coiled-coil interfaces. 2001 US Science SCIEAS 0038 0036-8075 254 539 544 X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil. 1991 US Science SCIEAS 0038 0036-8075 262 1401 1407 A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants 1993 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 3 1011 1018 Buried polar residues and structural specificity in the GCN4 leucine zipper 1996 10.2210/pdb1ij1/pdb pdb_00001ij1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE RIGAKU RAXIS IV mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 4004.676 GENERAL CONTROL PROTEIN GCN4 COILED COIL REGION L12T, N16V 3 syn polymer 65.409 ZINC ION 3 syn non-polymer 18.015 water 127 nat water GCN4-PVLS no yes (ACE)RMKQLEDKVEETLSKVYHLENEVARLKKLVGER XRMKQLEDKVEETLSKVYHLENEVARLKKLVGER A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.90 35.34 VAPOR DIFFUSION, HANGING DROP 6.0 0.1 M Na Cacodylate, 20% PEG 8000, 0.2 M Zn Acetate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 pdbx_unobs_or_zero_occ_atoms software database_2 pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Advisory Refinement description Advisory Database references Derived calculations 1 0 2001-08-08 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2021-10-27 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-04-24 REL ZN ZINC ION HOH water THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. IT IS NATURALLY FOUND IN SACCHAROMYCES CEREVISIAE (YEAST). THE PEPTIDE is a variant of the yeast GCN4 coiled coil region made by solid phase synthesis. sample ZN 1 2 ZN ZN 201 A ZN 2 2 ZN ZN 202 B ZN 3 2 ZN ZN 203 C TIP 1 3 HOH HOH 202 A TIP 4 3 HOH HOH 203 A TIP 5 3 HOH HOH 204 A TIP 8 3 HOH HOH 205 A TIP 9 3 HOH HOH 206 A TIP 12 3 HOH HOH 207 A TIP 14 3 HOH HOH 208 A TIP 15 3 HOH HOH 209 A TIP 16 3 HOH HOH 210 A TIP 20 3 HOH HOH 211 A TIP 22 3 HOH HOH 212 A TIP 31 3 HOH HOH 213 A TIP 32 3 HOH HOH 214 A TIP 34 3 HOH HOH 215 A TIP 36 3 HOH HOH 216 A TIP 37 3 HOH HOH 217 A TIP 38 3 HOH HOH 218 A TIP 39 3 HOH HOH 219 A TIP 40 3 HOH HOH 220 A TIP 41 3 HOH HOH 221 A TIP 48 3 HOH HOH 222 A TIP 50 3 HOH HOH 223 A TIP 51 3 HOH HOH 224 A TIP 58 3 HOH HOH 225 A TIP 62 3 HOH HOH 226 A TIP 63 3 HOH HOH 227 A TIP 66 3 HOH HOH 228 A TIP 68 3 HOH HOH 229 A TIP 71 3 HOH HOH 230 A TIP 72 3 HOH HOH 231 A TIP 73 3 HOH HOH 232 A TIP 77 3 HOH HOH 233 A TIP 86 3 HOH HOH 234 A TIP 87 3 HOH HOH 235 A TIP 89 3 HOH HOH 236 A TIP 90 3 HOH HOH 237 A TIP 91 3 HOH HOH 238 A TIP 102 3 HOH HOH 239 A TIP 106 3 HOH HOH 240 A TIP 107 3 HOH HOH 241 A TIP 110 3 HOH HOH 242 A TIP 119 3 HOH HOH 243 A TIP 120 3 HOH HOH 244 A TIP 121 3 HOH HOH 245 A TIP 122 3 HOH HOH 246 A TIP 123 3 HOH HOH 247 A TIP 124 3 HOH HOH 248 A TIP 2 3 HOH HOH 203 B TIP 7 3 HOH HOH 204 B TIP 10 3 HOH HOH 205 B TIP 11 3 HOH HOH 206 B TIP 19 3 HOH HOH 207 B TIP 24 3 HOH HOH 208 B TIP 28 3 HOH HOH 209 B TIP 29 3 HOH HOH 210 B TIP 43 3 HOH HOH 211 B TIP 52 3 HOH HOH 212 B TIP 54 3 HOH HOH 213 B TIP 55 3 HOH HOH 214 B TIP 56 3 HOH HOH 215 B TIP 60 3 HOH HOH 216 B TIP 61 3 HOH HOH 217 B TIP 65 3 HOH HOH 218 B TIP 70 3 HOH HOH 219 B TIP 76 3 HOH HOH 220 B TIP 84 3 HOH HOH 221 B TIP 92 3 HOH HOH 222 B TIP 93 3 HOH HOH 223 B TIP 95 3 HOH HOH 224 B TIP 100 3 HOH HOH 225 B TIP 101 3 HOH HOH 226 B TIP 108 3 HOH HOH 227 B TIP 125 3 HOH HOH 228 B TIP 126 3 HOH HOH 229 B TIP 128 3 HOH HOH 230 B TIP 3 3 HOH HOH 204 C TIP 6 3 HOH HOH 205 C TIP 13 3 HOH HOH 206 C TIP 17 3 HOH HOH 207 C TIP 18 3 HOH HOH 208 C TIP 21 3 HOH HOH 209 C TIP 23 3 HOH HOH 210 C TIP 25 3 HOH HOH 211 C TIP 26 3 HOH HOH 212 C TIP 27 3 HOH HOH 213 C TIP 30 3 HOH HOH 214 C TIP 33 3 HOH HOH 215 C TIP 35 3 HOH HOH 216 C TIP 42 3 HOH HOH 217 C TIP 44 3 HOH HOH 218 C TIP 45 3 HOH HOH 219 C TIP 46 3 HOH HOH 220 C TIP 47 3 HOH HOH 221 C TIP 49 3 HOH HOH 222 C TIP 53 3 HOH HOH 223 C TIP 57 3 HOH HOH 224 C TIP 59 3 HOH HOH 225 C TIP 64 3 HOH HOH 226 C TIP 67 3 HOH HOH 227 C TIP 69 3 HOH HOH 228 C TIP 74 3 HOH HOH 229 C TIP 75 3 HOH HOH 230 C TIP 78 3 HOH HOH 231 C TIP 79 3 HOH HOH 232 C TIP 80 3 HOH HOH 233 C TIP 81 3 HOH HOH 234 C TIP 82 3 HOH HOH 235 C TIP 83 3 HOH HOH 236 C TIP 85 3 HOH HOH 237 C TIP 88 3 HOH HOH 238 C TIP 94 3 HOH HOH 239 C TIP 96 3 HOH HOH 240 C TIP 97 3 HOH HOH 241 C TIP 98 3 HOH HOH 242 C TIP 99 3 HOH HOH 243 C TIP 103 3 HOH HOH 244 C TIP 104 3 HOH HOH 245 C TIP 105 3 HOH HOH 246 C TIP 109 3 HOH HOH 247 C TIP 111 3 HOH HOH 248 C TIP 112 3 HOH HOH 249 C TIP 113 3 HOH HOH 250 C TIP 114 3 HOH HOH 251 C TIP 115 3 HOH HOH 252 C TIP 116 3 HOH HOH 253 C TIP 117 3 HOH HOH 254 C TIP 130 3 HOH HOH 255 C ACE 0 n 1 ACE 0 A ARG 1 n 2 ARG 1 A MET 2 n 3 MET 2 A LYS 3 n 4 LYS 3 A GLN 4 n 5 GLN 4 A LEU 5 n 6 LEU 5 A GLU 6 n 7 GLU 6 A ASP 7 n 8 ASP 7 A LYS 8 n 9 LYS 8 A VAL 9 n 10 VAL 9 A GLU 10 n 11 GLU 10 A GLU 11 n 12 GLU 11 A THR 12 n 13 THR 12 A LEU 13 n 14 LEU 13 A SER 14 n 15 SER 14 A LYS 15 n 16 LYS 15 A VAL 16 n 17 VAL 16 A TYR 17 n 18 TYR 17 A HIS 18 n 19 HIS 18 A LEU 19 n 20 LEU 19 A GLU 20 n 21 GLU 20 A ASN 21 n 22 ASN 21 A GLU 22 n 23 GLU 22 A VAL 23 n 24 VAL 23 A ALA 24 n 25 ALA 24 A ARG 25 n 26 ARG 25 A LEU 26 n 27 LEU 26 A LYS 27 n 28 LYS 27 A LYS 28 n 29 LYS 28 A LEU 29 n 30 LEU 29 A VAL 30 n 31 VAL 30 A GLY 31 n 32 GLY 31 A n 33 32 A n 34 33 A ACE 0 n 1 ACE 0 B ARG 1 n 2 ARG 1 B MET 2 n 3 MET 2 B LYS 3 n 4 LYS 3 B GLN 4 n 5 GLN 4 B LEU 5 n 6 LEU 5 B GLU 6 n 7 GLU 6 B ASP 7 n 8 ASP 7 B LYS 8 n 9 LYS 8 B VAL 9 n 10 VAL 9 B GLU 10 n 11 GLU 10 B GLU 11 n 12 GLU 11 B THR 12 n 13 THR 12 B LEU 13 n 14 LEU 13 B SER 14 n 15 SER 14 B LYS 15 n 16 LYS 15 B VAL 16 n 17 VAL 16 B TYR 17 n 18 TYR 17 B HIS 18 n 19 HIS 18 B LEU 19 n 20 LEU 19 B GLU 20 n 21 GLU 20 B ASN 21 n 22 ASN 21 B GLU 22 n 23 GLU 22 B VAL 23 n 24 VAL 23 B ALA 24 n 25 ALA 24 B ARG 25 n 26 ARG 25 B LEU 26 n 27 LEU 26 B LYS 27 n 28 LYS 27 B LYS 28 n 29 LYS 28 B LEU 29 n 30 LEU 29 B VAL 30 n 31 VAL 30 B GLY 31 n 32 GLY 31 B n 33 32 B n 34 33 B ACE 0 n 1 ACE 0 C ARG 1 n 2 ARG 1 C MET 2 n 3 MET 2 C LYS 3 n 4 LYS 3 C GLN 4 n 5 GLN 4 C LEU 5 n 6 LEU 5 C GLU 6 n 7 GLU 6 C ASP 7 n 8 ASP 7 C LYS 8 n 9 LYS 8 C VAL 9 n 10 VAL 9 C GLU 10 n 11 GLU 10 C GLU 11 n 12 GLU 11 C THR 12 n 13 THR 12 C LEU 13 n 14 LEU 13 C SER 14 n 15 SER 14 C LYS 15 n 16 LYS 15 C VAL 16 n 17 VAL 16 C TYR 17 n 18 TYR 17 C HIS 18 n 19 HIS 18 C LEU 19 n 20 LEU 19 C GLU 20 n 21 GLU 20 C ASN 21 n 22 ASN 21 C GLU 22 n 23 GLU 22 C VAL 23 n 24 VAL 23 C ALA 24 n 25 ALA 24 C ARG 25 n 26 ARG 25 C LEU 26 n 27 LEU 26 C LYS 27 n 28 LYS 27 C LYS 28 n 29 LYS 28 C LEU 29 n 30 LEU 29 C VAL 30 n 31 VAL 30 C GLY 31 n 32 GLY 31 C n 33 32 C n 34 33 C author_and_software_defined_assembly PISA 3 trimeric 4700 -139 6220 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 A GLU 22 A OE2 GLU 23 1_555 108.0 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 A HOH 219 G O HOH 1_555 101.2 A GLU 22 A OE2 GLU 23 1_555 A ZN 201 D ZN ZN 1_555 A HOH 219 G O HOH 1_555 127.2 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 A HOH 220 G O HOH 1_555 107.4 A GLU 22 A OE2 GLU 23 1_555 A ZN 201 D ZN ZN 1_555 A HOH 220 G O HOH 1_555 93.3 A HOH 219 G O HOH 1_555 A ZN 201 D ZN ZN 1_555 A HOH 220 G O HOH 1_555 118.7 B HIS 18 B NE2 HIS 19 1_555 B ZN 202 E ZN ZN 1_555 B GLU 22 B OE2 GLU 23 1_555 95.4 B HIS 18 B NE2 HIS 19 1_555 B ZN 202 E ZN ZN 1_555 B HOH 224 H O HOH 1_555 116.8 B GLU 22 B OE2 GLU 23 1_555 B ZN 202 E ZN ZN 1_555 B HOH 224 H O HOH 1_555 102.6 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 C GLU 22 C OE1 GLU 23 1_555 93.1 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 C HOH 222 I O HOH 1_555 83.0 C GLU 22 C OE1 GLU 23 1_555 C ZN 203 F ZN ZN 1_555 C HOH 222 I O HOH 1_555 77.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A OE1 GLN 4 A OE1 GLN 5 0 Y 1 A NE2 GLN 4 A NE2 GLN 5 0 Y 1 B CG LYS 3 B CG LYS 4 0 Y 1 B CD LYS 3 B CD LYS 4 0 Y 1 B CE LYS 3 B CE LYS 4 0 Y 1 B NZ LYS 3 B NZ LYS 4 0 Y 1 B OE1 GLN 4 B OE1 GLN 5 0 Y 1 B NE2 GLN 4 B NE2 GLN 5 0 Y 1 B CE LYS 8 B CE LYS 9 0 Y 1 B NZ LYS 8 B NZ LYS 9 0 Y 1 B CE LYS 15 B CE LYS 16 0 Y 1 B NZ LYS 15 B NZ LYS 16 0 Y 1 B CG LYS 28 B CG LYS 29 0 Y 1 B CD LYS 28 B CD LYS 29 0 Y 1 B CE LYS 28 B CE LYS 29 0 Y 1 B NZ LYS 28 B NZ LYS 29 0 Y 1 C NZ LYS 3 C NZ LYS 4 0 Y 1 A GLU 32 A GLU 33 1 Y 1 A ARG 33 A ARG 34 1 Y 1 B GLU 32 B GLU 33 1 Y 1 B ARG 33 B ARG 34 1 Y 1 C GLU 32 C GLU 33 1 Y 1 C ARG 33 C ARG 34 1 Y 1 A VAL 30 -96.78 -73.11 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 35.6 -3.59 0.00 -3.98 7.95 0.00 -4.36 0.2780000 0.010 0.2270000 0.2320000 0.2270000 1.86 20.00 703 7645 7316 9.6 95.3 RANDOM 472116.94 0.00 1 RESTRAINED THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT Engh & Huber FLAT MODEL 71.48 0.292 0.33 0.25 5.00 0.23 0.21 1.86 20.00 127 913 3 0 783 0.010 1.3 13.7 0.83 0.3780000 0.046 0.3100000 1.93 69 709 9 8.9 90.4 29.7 1.80 20.00 1IJ1 8488 8284 -3.0 0 0.0460000 1 12.4 4.6 97.6 0.3060000 1.86 1.94 4.5 4.1 87.8 phasing AMoRE refinement CNS 0.5 data scaling SCALEPACK GCN4-pVLT Coiled-coil Trimer with Threonine at the d(12) Position 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N A ARG 1 A ARG 2 HELX_P A GLY 31 A GLY 32 1 1 31 B ARG 1 B ARG 2 HELX_P B GLY 31 B GLY 32 1 2 31 C ARG 1 C ARG 2 HELX_P C GLY 31 C GLY 32 1 3 31 covale 1.333 both A ACE 0 A C ACE 1 1_555 A ARG 1 A N ARG 2 1_555 covale 1.335 both B ACE 0 B C ACE 1 1_555 B ARG 1 B N ARG 2 1_555 covale 1.330 both C ACE 0 C C ACE 1 1_555 C ARG 1 C N ARG 2 1_555 metalc 2.241 A HIS 18 A NE2 HIS 19 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.773 A GLU 22 A OE2 GLU 23 1_555 A ZN 201 D ZN ZN 1_555 metalc 2.238 A ZN 201 D ZN ZN 1_555 A HOH 219 G O HOH 1_555 metalc 2.532 A ZN 201 D ZN ZN 1_555 A HOH 220 G O HOH 1_555 metalc 2.370 B HIS 18 B NE2 HIS 19 1_555 B ZN 202 E ZN ZN 1_555 metalc 2.552 B GLU 22 B OE2 GLU 23 1_555 B ZN 202 E ZN ZN 1_555 metalc 2.527 B ZN 202 E ZN ZN 1_555 B HOH 224 H O HOH 1_555 metalc 2.554 C HIS 18 C NE2 HIS 19 1_555 C ZN 203 F ZN ZN 1_555 metalc 2.512 C GLU 22 C OE1 GLU 23 1_555 C ZN 203 F ZN ZN 1_555 metalc 2.721 C ZN 203 F ZN ZN 1_555 C HOH 222 I O HOH 1_555 TRANSCRIPTION GCN4, coiled coil, TRANSCRIPTION GCN4_YEAST UNP 1 249 P03069 RMKQLEDKVEELLSKNYHLENEVARLKKLVGER 249 281 1IJ1 1 33 P03069 A 1 2 34 249 281 1IJ1 1 33 P03069 B 1 2 34 249 281 1IJ1 1 33 P03069 C 1 2 34 1 LEU engineered mutation THR 12 1IJ1 A P03069 UNP 260 13 1 ASN engineered mutation VAL 16 1IJ1 A P03069 UNP 264 17 2 LEU engineered mutation THR 12 1IJ1 B P03069 UNP 260 13 2 ASN engineered mutation VAL 16 1IJ1 B P03069 UNP 264 17 3 LEU engineered mutation THR 12 1IJ1 C P03069 UNP 260 13 3 ASN engineered mutation VAL 16 1IJ1 C P03069 UNP 264 17 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 4 BINDING SITE FOR RESIDUE ZN B 202 B ZN 202 Software 5 BINDING SITE FOR RESIDUE ZN C 203 C ZN 203 Software 3 A HIS 18 A HIS 19 4 1_555 A GLU 22 A GLU 23 4 1_555 A HOH 219 G HOH 4 1_555 A HOH 220 G HOH 4 1_555 B HIS 18 B HIS 19 5 1_555 B GLU 22 B GLU 23 5 1_555 B HOH 205 H HOH 5 1_555 B HOH 211 H HOH 5 1_555 B HOH 224 H HOH 5 1_555 C HIS 18 C HIS 19 3 1_555 C GLU 22 C GLU 23 3 1_555 C HOH 222 I HOH 3 1_555 4 P 1 21 1