0.013837 0.000000 0.000000 0.000000 0.012444 0.000000 0.000000 0.000000 0.023040 0.00000 0.00000 0.00000 Livnah, O. Huberman, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 72.269 80.362 43.402 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C16 H20 N4 O4 S 364.419 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE BIOTINYL P-NITROANILINE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N C N 77 N C N 78 N C N 79 S C N 80 N C N 81 S C N 82 R C N 83 N C N 84 N O N 85 N O N 86 N N N 87 N N N 88 N S N 89 N N Y 90 N C Y 91 N C Y 92 N C Y 93 N C Y 94 N C Y 95 N C N 96 N N N 97 N O N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 R C N 121 N C N 122 N O N 123 N C N 124 N S N 125 N O N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N N N 134 S C N 135 N C N 136 N O N 137 N C N 138 N C N 139 N C N 140 N O N 141 N N N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C N 158 N C N 159 N C N 160 N O N 161 N O N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N N N 173 N C N 174 N C N 175 N O N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 N C Y 187 N C Y 188 N N Y 189 N C Y 190 N C Y 191 N N N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N O N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 S C N 211 N C N 212 N C N 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 S C N 230 N C N 231 N O N 232 N C N 233 N C N 234 N C N 235 N C N 236 N O N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C N 255 N C N 256 N C N 257 N C N 258 N N N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N S N 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 R C N 296 R C N 297 R C N 298 S C N 299 R C N 300 N C N 301 N C N 302 N C N 303 N N N 304 N O N 305 N O N 306 N O N 307 N O N 308 N O N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C N 370 N O N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 R C N 384 N O N 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N N Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C Y 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C N 434 N O N 435 N O N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 N C N 452 N C N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing Y 104 N doub Y 105 N sing Y 106 N sing N 107 N sing Y 108 N doub N 109 N sing Y 110 N sing N 111 N sing Y 112 N doub N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing Y 187 N sing Y 188 N doub Y 189 N doub N 190 N sing Y 191 N sing N 192 N sing Y 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N doub N 330 N sing Y 331 N doub N 332 N sing Y 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing Y 394 N doub Y 395 N sing Y 396 N sing N 397 N sing Y 398 N doub Y 399 N sing Y 400 N sing N 401 N sing Y 402 N sing Y 403 N doub N 404 N sing Y 405 N doub N 406 N sing Y 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing Y 422 N doub Y 423 N sing Y 424 N sing N 425 N sing Y 426 N doub N 427 N sing Y 428 N doub N 429 N sing Y 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 276 32031 32039 10.1074/jbc.M102018200 11395489 Chicken avidin exhibits pseudo-catalytic properties. Biochemical, structural, and electrostatic consequences. 2001 10.2210/pdb1ij8/pdb pdb_00001ij8 NAG A 401 HAS WRONG CHIRALITY AT ATOM C1 NAG B 402 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 Max-Flux IMAGE PLATE 2000-06-18 RIGAKU RAXIS IV mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU ULTRAX 18 14350.081 AVIDIN 2 nat polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 2 man non-polymer 364.419 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE 2 syn non-polymer 18.015 water 82 nat water no no ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYTTAVTATSNEIKESPLHGTENTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYTTAVTATSNEIKESPLHGTENTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n chicken Gallus sample 9031 Gallus gallus EGG WHITE 1 2.20 43.97 VAPOR DIFFUSION, HANGING DROP 5.8 12% PEG2000, 0.1M imidazole malate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software atom_site chem_comp database_PDB_caveat entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_validate_chiral struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Refinement description Advisory Atomic model Data collection Derived calculations Non-polymer description Structure summary Data collection Database references Refinement description Structure summary 1 0 2001-09-12 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 2 0 2020-07-29 2 1 2023-10-25 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _chem_comp.id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.name _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc 2AVI contains avidin-biotin complex 1I9H contains streptavidin-BNA complex RCSB Y PDBJ 2001-04-25 REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose BNI 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE HOH water 2AVI PDB experimental model NAG 401 2 NAG NAG 401 A BNI 501 3 BNI BNI 501 A NAG 402 2 NAG NAG 402 B BNI 502 3 BNI BNI 502 B HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 604 4 HOH HOH 604 A HOH 606 4 HOH HOH 606 A HOH 613 4 HOH HOH 613 A HOH 614 4 HOH HOH 614 A HOH 615 4 HOH HOH 615 A HOH 622 4 HOH HOH 622 A HOH 623 4 HOH HOH 623 A HOH 625 4 HOH HOH 625 A HOH 627 4 HOH HOH 627 A HOH 628 4 HOH HOH 628 A HOH 630 4 HOH HOH 630 A HOH 631 4 HOH HOH 631 A HOH 632 4 HOH HOH 632 A HOH 635 4 HOH HOH 635 A HOH 636 4 HOH HOH 636 A HOH 638 4 HOH HOH 638 A HOH 639 4 HOH HOH 639 A HOH 641 4 HOH HOH 641 A HOH 644 4 HOH HOH 644 A HOH 645 4 HOH HOH 645 A HOH 646 4 HOH HOH 646 A HOH 648 4 HOH HOH 648 A HOH 654 4 HOH HOH 654 A HOH 655 4 HOH HOH 655 A HOH 656 4 HOH HOH 656 A HOH 659 4 HOH HOH 659 A HOH 661 4 HOH HOH 661 A HOH 662 4 HOH HOH 662 A HOH 665 4 HOH HOH 665 A HOH 668 4 HOH HOH 668 A HOH 670 4 HOH HOH 670 A HOH 673 4 HOH HOH 673 A HOH 675 4 HOH HOH 675 A HOH 676 4 HOH HOH 676 A HOH 677 4 HOH HOH 677 A HOH 680 4 HOH HOH 680 A HOH 682 4 HOH HOH 682 A HOH 603 4 HOH HOH 603 B HOH 605 4 HOH HOH 605 B HOH 607 4 HOH HOH 607 B HOH 608 4 HOH HOH 608 B HOH 609 4 HOH HOH 609 B HOH 610 4 HOH HOH 610 B HOH 611 4 HOH HOH 611 B HOH 612 4 HOH HOH 612 B HOH 616 4 HOH HOH 616 B HOH 617 4 HOH HOH 617 B HOH 618 4 HOH HOH 618 B HOH 619 4 HOH HOH 619 B HOH 620 4 HOH HOH 620 B HOH 621 4 HOH HOH 621 B HOH 624 4 HOH HOH 624 B HOH 626 4 HOH HOH 626 B HOH 629 4 HOH HOH 629 B HOH 633 4 HOH HOH 633 B HOH 634 4 HOH HOH 634 B HOH 637 4 HOH HOH 637 B HOH 640 4 HOH HOH 640 B HOH 642 4 HOH HOH 642 B HOH 643 4 HOH HOH 643 B HOH 647 4 HOH HOH 647 B HOH 649 4 HOH HOH 649 B HOH 650 4 HOH HOH 650 B HOH 651 4 HOH HOH 651 B HOH 652 4 HOH HOH 652 B HOH 653 4 HOH HOH 653 B HOH 657 4 HOH HOH 657 B HOH 658 4 HOH HOH 658 B HOH 660 4 HOH HOH 660 B HOH 663 4 HOH HOH 663 B HOH 664 4 HOH HOH 664 B HOH 666 4 HOH HOH 666 B HOH 667 4 HOH HOH 667 B HOH 669 4 HOH HOH 669 B HOH 671 4 HOH HOH 671 B HOH 672 4 HOH HOH 672 B HOH 674 4 HOH HOH 674 B HOH 678 4 HOH HOH 678 B HOH 679 4 HOH HOH 679 B HOH 681 4 HOH HOH 681 B n 1 1 A n 2 2 A LYS 3 n 3 LYS 3 A CYS 4 n 4 CYS 4 A SER 5 n 5 SER 5 A LEU 6 n 6 LEU 6 A THR 7 n 7 THR 7 A GLY 8 n 8 GLY 8 A LYS 9 n 9 LYS 9 A TRP 10 n 10 TRP 10 A THR 11 n 11 THR 11 A ASN 12 n 12 ASN 12 A ASP 13 n 13 ASP 13 A LEU 14 n 14 LEU 14 A GLY 15 n 15 GLY 15 A SER 16 n 16 SER 16 A ASN 17 n 17 ASN 17 A MET 18 n 18 MET 18 A THR 19 n 19 THR 19 A ILE 20 n 20 ILE 20 A GLY 21 n 21 GLY 21 A ALA 22 n 22 ALA 22 A VAL 23 n 23 VAL 23 A ASN 24 n 24 ASN 24 A SER 25 n 25 SER 25 A ARG 26 n 26 ARG 26 A GLY 27 n 27 GLY 27 A GLU 28 n 28 GLU 28 A PHE 29 n 29 PHE 29 A THR 30 n 30 THR 30 A GLY 31 n 31 GLY 31 A THR 32 n 32 THR 32 A TYR 33 n 33 TYR 33 A THR 34 n 34 THR 34 A THR 35 n 35 THR 35 A ALA 36 n 36 ALA 36 A VAL 37 n 37 VAL 37 A THR 38 n 38 THR 38 A n 39 39 A n 40 40 A n 41 41 A ASN 42 n 42 ASN 42 A GLU 43 n 43 GLU 43 A ILE 44 n 44 ILE 44 A LYS 45 n 45 LYS 45 A GLU 46 n 46 GLU 46 A SER 47 n 47 SER 47 A PRO 48 n 48 PRO 48 A LEU 49 n 49 LEU 49 A HIS 50 n 50 HIS 50 A GLY 51 n 51 GLY 51 A THR 52 n 52 THR 52 A GLU 53 n 53 GLU 53 A ASN 54 n 54 ASN 54 A THR 55 n 55 THR 55 A ILE 56 n 56 ILE 56 A ASN 57 n 57 ASN 57 A LYS 58 n 58 LYS 58 A ARG 59 n 59 ARG 59 A THR 60 n 60 THR 60 A GLN 61 n 61 GLN 61 A PRO 62 n 62 PRO 62 A THR 63 n 63 THR 63 A PHE 64 n 64 PHE 64 A GLY 65 n 65 GLY 65 A PHE 66 n 66 PHE 66 A THR 67 n 67 THR 67 A VAL 68 n 68 VAL 68 A ASN 69 n 69 ASN 69 A TRP 70 n 70 TRP 70 A LYS 71 n 71 LYS 71 A PHE 72 n 72 PHE 72 A SER 73 n 73 SER 73 A GLU 74 n 74 GLU 74 A SER 75 n 75 SER 75 A THR 76 n 76 THR 76 A THR 77 n 77 THR 77 A VAL 78 n 78 VAL 78 A PHE 79 n 79 PHE 79 A THR 80 n 80 THR 80 A GLY 81 n 81 GLY 81 A GLN 82 n 82 GLN 82 A CYS 83 n 83 CYS 83 A PHE 84 n 84 PHE 84 A ILE 85 n 85 ILE 85 A ASP 86 n 86 ASP 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A GLY 89 n 89 GLY 89 A LYS 90 n 90 LYS 90 A GLU 91 n 91 GLU 91 A VAL 92 n 92 VAL 92 A LEU 93 n 93 LEU 93 A LYS 94 n 94 LYS 94 A THR 95 n 95 THR 95 A MET 96 n 96 MET 96 A TRP 97 n 97 TRP 97 A LEU 98 n 98 LEU 98 A LEU 99 n 99 LEU 99 A ARG 100 n 100 ARG 100 A SER 101 n 101 SER 101 A SER 102 n 102 SER 102 A VAL 103 n 103 VAL 103 A ASN 104 n 104 ASN 104 A ASP 105 n 105 ASP 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A ASP 108 n 108 ASP 108 A ASP 109 n 109 ASP 109 A TRP 110 n 110 TRP 110 A LYS 111 n 111 LYS 111 A ALA 112 n 112 ALA 112 A THR 113 n 113 THR 113 A ARG 114 n 114 ARG 114 A VAL 115 n 115 VAL 115 A GLY 116 n 116 GLY 116 A ILE 117 n 117 ILE 117 A ASN 118 n 118 ASN 118 A ILE 119 n 119 ILE 119 A PHE 120 n 120 PHE 120 A THR 121 n 121 THR 121 A ARG 122 n 122 ARG 122 A LEU 123 n 123 LEU 123 A n 124 124 A n 125 125 A n 126 126 A n 127 127 A n 128 128 A n 1 201 B ARG 202 n 2 ARG 202 B LYS 203 n 3 LYS 203 B CYS 204 n 4 CYS 204 B SER 205 n 5 SER 205 B LEU 206 n 6 LEU 206 B THR 207 n 7 THR 207 B GLY 208 n 8 GLY 208 B LYS 209 n 9 LYS 209 B TRP 210 n 10 TRP 210 B THR 211 n 11 THR 211 B ASN 212 n 12 ASN 212 B ASP 213 n 13 ASP 213 B LEU 214 n 14 LEU 214 B GLY 215 n 15 GLY 215 B SER 216 n 16 SER 216 B ASN 217 n 17 ASN 217 B MET 218 n 18 MET 218 B THR 219 n 19 THR 219 B ILE 220 n 20 ILE 220 B GLY 221 n 21 GLY 221 B ALA 222 n 22 ALA 222 B VAL 223 n 23 VAL 223 B ASN 224 n 24 ASN 224 B SER 225 n 25 SER 225 B ARG 226 n 26 ARG 226 B GLY 227 n 27 GLY 227 B GLU 228 n 28 GLU 228 B PHE 229 n 29 PHE 229 B THR 230 n 30 THR 230 B GLY 231 n 31 GLY 231 B THR 232 n 32 THR 232 B TYR 233 n 33 TYR 233 B THR 234 n 34 THR 234 B THR 235 n 35 THR 235 B ALA 236 n 36 ALA 236 B VAL 237 n 37 VAL 237 B THR 238 n 38 THR 238 B n 39 239 B n 40 240 B n 41 241 B ASN 242 n 42 ASN 242 B GLU 243 n 43 GLU 243 B ILE 244 n 44 ILE 244 B LYS 245 n 45 LYS 245 B GLU 246 n 46 GLU 246 B SER 247 n 47 SER 247 B PRO 248 n 48 PRO 248 B LEU 249 n 49 LEU 249 B HIS 250 n 50 HIS 250 B GLY 251 n 51 GLY 251 B THR 252 n 52 THR 252 B GLU 253 n 53 GLU 253 B ASN 254 n 54 ASN 254 B THR 255 n 55 THR 255 B ILE 256 n 56 ILE 256 B ASN 257 n 57 ASN 257 B LYS 258 n 58 LYS 258 B ARG 259 n 59 ARG 259 B THR 260 n 60 THR 260 B GLN 261 n 61 GLN 261 B PRO 262 n 62 PRO 262 B THR 263 n 63 THR 263 B PHE 264 n 64 PHE 264 B GLY 265 n 65 GLY 265 B PHE 266 n 66 PHE 266 B THR 267 n 67 THR 267 B VAL 268 n 68 VAL 268 B ASN 269 n 69 ASN 269 B TRP 270 n 70 TRP 270 B LYS 271 n 71 LYS 271 B PHE 272 n 72 PHE 272 B SER 273 n 73 SER 273 B GLU 274 n 74 GLU 274 B SER 275 n 75 SER 275 B THR 276 n 76 THR 276 B THR 277 n 77 THR 277 B VAL 278 n 78 VAL 278 B PHE 279 n 79 PHE 279 B THR 280 n 80 THR 280 B GLY 281 n 81 GLY 281 B GLN 282 n 82 GLN 282 B CYS 283 n 83 CYS 283 B PHE 284 n 84 PHE 284 B ILE 285 n 85 ILE 285 B ASP 286 n 86 ASP 286 B ARG 287 n 87 ARG 287 B ASN 288 n 88 ASN 288 B GLY 289 n 89 GLY 289 B LYS 290 n 90 LYS 290 B GLU 291 n 91 GLU 291 B VAL 292 n 92 VAL 292 B LEU 293 n 93 LEU 293 B LYS 294 n 94 LYS 294 B THR 295 n 95 THR 295 B MET 296 n 96 MET 296 B TRP 297 n 97 TRP 297 B LEU 298 n 98 LEU 298 B LEU 299 n 99 LEU 299 B ARG 300 n 100 ARG 300 B SER 301 n 101 SER 301 B SER 302 n 102 SER 302 B VAL 303 n 103 VAL 303 B ASN 304 n 104 ASN 304 B ASP 305 n 105 ASP 305 B ILE 306 n 106 ILE 306 B GLY 307 n 107 GLY 307 B ASP 308 n 108 ASP 308 B ASP 309 n 109 ASP 309 B TRP 310 n 110 TRP 310 B LYS 311 n 111 LYS 311 B ALA 312 n 112 ALA 312 B THR 313 n 113 THR 313 B ARG 314 n 114 ARG 314 B VAL 315 n 115 VAL 315 B GLY 316 n 116 GLY 316 B ILE 317 n 117 ILE 317 B ASN 318 n 118 ASN 318 B ILE 319 n 119 ILE 319 B PHE 320 n 120 PHE 320 B THR 321 n 121 THR 321 B ARG 322 n 122 ARG 322 B LEU 323 n 123 LEU 323 B n 124 324 B n 125 325 B n 126 326 B n 127 327 B n 128 328 B author_and_software_defined_assembly PISA,PQS 4 tetrameric 13880 -6 20220 B ASN 217 GLYCOSYLATION SITE B ASN 17 ASN A ASN 17 GLYCOSYLATION SITE A ASN 17 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_565 -x,-y+1,z crystal symmetry operation 0.0000000000 80.3620000000 0.0000000000 A N TRP 10 A N TRP 10 A O MET 18 A O MET 18 A N THR 19 A N THR 19 A O THR 32 A O THR 32 A O THR 35 A O THR 35 A N LYS 45 A N LYS 45 A N THR 52 A N THR 52 A O GLY 65 A O GLY 65 A N VAL 68 A N VAL 68 A O THR 77 A O THR 77 A N PHE 84 A N PHE 84 A O VAL 92 A O VAL 92 A N LEU 99 A N LEU 99 A O ARG 114 A O ARG 114 A N THR 121 A N THR 121 A O THR 11 A O THR 11 B N TRP 210 B N TRP 10 B O MET 218 B O MET 18 B N THR 219 B N THR 19 B O THR 232 B O THR 32 B O THR 235 B O THR 35 B N LYS 245 B N LYS 45 B O THR 252 B O THR 52 B N GLY 265 B N GLY 65 B N VAL 268 B N VAL 68 B O THR 277 B O THR 77 B N PHE 284 B N PHE 84 B O VAL 292 B O VAL 92 B N LEU 299 B N LEU 99 B O ARG 314 B O ARG 114 B N THR 321 B N THR 121 B O THR 211 B O THR 11 1 A ALA 1 A ALA 1 1 Y 1 A ARG 2 A ARG 2 1 Y 1 A ALA 39 A ALA 39 1 Y 1 A THR 40 A THR 40 1 Y 1 A SER 41 A SER 41 1 Y 1 A ARG 124 A ARG 124 1 Y 1 A THR 125 A THR 125 1 Y 1 A GLN 126 A GLN 126 1 Y 1 A LYS 127 A LYS 127 1 Y 1 A GLU 128 A GLU 128 1 Y 1 B ALA 201 B ALA 1 1 Y 1 B ALA 239 B ALA 39 1 Y 1 B THR 240 B THR 40 1 Y 1 B SER 241 B SER 41 1 Y 1 B ARG 324 B ARG 124 1 Y 1 B THR 325 B THR 125 1 Y 1 B GLN 326 B GLN 126 1 Y 1 B LYS 327 B LYS 127 1 Y 1 B GLU 328 B GLU 128 1 Y 1 A C1 NAG 401 WRONG HAND 1 B C1 NAG 402 WRONG HAND 1 15.45 2.30 115.30 130.75 A A A CA CB CG LEU LEU LEU 49 49 49 N 1 A GLU 43 -109.93 -69.11 1 A LYS 58 37.98 48.89 1 B ASN 224 -66.37 -174.23 1 B VAL 237 -153.64 29.00 1 B LYS 258 33.42 49.28 -2.258 0.0 0.0 0.360 0.0 1.898 0.234 0.204 0.206 0.206 2.0 50.0 1568 33015 31543 5 random 1 1.0 1.0 FOURIER SYNTHESIS 2AVI Engh & Huber 2.0 50.0 82 2027 78 0 1867 29.5 2.0 50.0 1IJ8 17510 17510 1. 1. 0.052 1 30.7 5.5 98.7 0.279 2.0 2.05 1 5.5 98.1 data scaling SCALEPACK refinement CNS phasing CNS CRYSTAL STRUCTURE OF LITE AVIDIN-BNI COMPLEX 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N The second part of the biological assembly to for the avidin tetramer is generated by the two fold axis -x, -y+1, z A THR 55 A THR 55 HELX_P A ARG 59 A ARG 59 5 1 5 A ASP 105 A ASP 105 HELX_P A LYS 111 A LYS 111 5 2 7 B THR 255 B THR 55 HELX_P B ARG 259 B ARG 59 5 3 5 B ASP 305 B ASP 105 HELX_P B LYS 311 B LYS 111 5 4 7 disulf 2.022 A CYS 4 A SG CYS 4 1_555 A CYS 83 A SG CYS 83 1_555 disulf 2.027 B CYS 204 B SG CYS 4 1_555 B CYS 283 B SG CYS 83 1_555 covale 1.453 one N-Glycosylation A ASN 17 A ND2 ASN 17 1_555 A NAG 401 C C1 NAG 1_555 covale 1.449 one N-Glycosylation B ASN 217 B ND2 ASN 17 1_555 B NAG 402 E C1 NAG 1_555 UNKNOWN FUNCTION avidin, streptavidin, pseudo enzymatic activity, UNKNOWN FUNCTION AVID_CHICK UNP 1 P02701 25 152 1IJ8 1 128 P02701 A 1 1 128 25 152 1IJ8 201 328 P02701 B 1 1 128 1 ILE SEE REMARK 999 THR 34 1IJ8 A P02701 UNP 58 34 2 ILE SEE REMARK 999 THR 234 1IJ8 B P02701 UNP 58 34 9 9 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 8 A GLY 8 A ASN 12 A ASN 12 A ASN 17 A ASN 17 A ILE 20 A ILE 20 A GLU 28 A GLU 28 A ALA 36 A ALA 36 A ILE 44 A ILE 44 A GLU 53 A GLU 53 A THR 63 A THR 63 A ASN 69 A ASN 69 A THR 76 A THR 76 A ILE 85 A ILE 85 A GLU 91 A GLU 91 A ARG 100 A ARG 100 A THR 113 A THR 113 A ARG 122 A ARG 122 A GLY 8 A GLY 8 A ASN 12 A ASN 12 B GLY 208 B GLY 8 B ASN 212 B ASN 12 B ASN 217 B ASN 17 B ILE 220 B ILE 20 B GLU 228 B GLU 28 B ALA 236 B ALA 36 B ILE 244 B ILE 44 B GLU 253 B GLU 53 B THR 263 B THR 63 B ASN 269 B ASN 69 B THR 276 B THR 76 B ILE 285 B ILE 85 B GLU 291 B GLU 91 B ARG 300 B ARG 100 B THR 313 B THR 113 B ARG 322 B ARG 122 B GLY 208 B GLY 8 B ASN 212 B ASN 12 18 P 21 21 2